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* [svn-r16311] Description:Quincey Koziol2009-01-141-1/+1
| | | | | | | | | | | | | | | | | | | Bring revisions 16280:16307 back from trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15993] Pedro Vicente Nunes2008-10-291-186/+45
| | | | | | Merge with 1.8 rev 15985 reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code Tested: linux
* [svn-r15792] Bug fix. When detecting the user requested filters, the "all" ↵Pedro Vicente Nunes2008-10-061-2/+2
| | | | | | option was not taken in consideration when printing the compression ratio Tested: windows, linux
* [svn-r15653] cleaned warningsPedro Vicente Nunes2008-09-181-55/+13
| | | | tested: windows, linux
* [svn-r15635] add info regarding user block to usagePedro Vicente Nunes2008-09-161-1/+2
| | | | tested: windows, linux
* [svn-r15628] Description:Quincey Koziol2008-09-161-102/+102
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15551] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-281-17/+44
| | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15526] userblock optionsPedro Vicente Nunes2008-08-251-1/+1
| | | | | | only write the user block of a pre-existing file with user block in case there is no input user block file tested: windows, linux
* [svn-r15521] #1184Pedro Vicente Nunes2008-08-221-4/+24
| | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15421] bug fixPedro Vicente Nunes2008-07-281-5/+5
| | | | | | | the parsing of the command line strings for the shared object header message type was not being done correctly (strcmp) fix: substituted by strncmp tested: windows, linux
* [svn-r15047] bug fix regarding change from -i to -d regarding number of ↵Pedro Vicente Nunes2008-05-201-1/+1
| | | | | | links in indexed format tested: windows
* [svn-r15044] backward compatibility for old -i infile -o outfile optionsPedro Vicente Nunes2008-05-201-16/+186
| | | | | | | | | | | | | | | | | if these are detected this syntax is used, otherwise the one in usage is used there was another -i option for -i L2, --indexed=L2 Minimum number of links in the indexed format That was changed to -d -d L2, --indexed=L2 Minimum number of links in the indexed format Tested: windows, linux
* [svn-r14368] clean code and reshufle functions between modules, remove ↵Pedro Vicente Nunes2008-01-031-1/+123
| | | | | | unused functions tested: windows, linux
* [svn-r14311] enhancement: change the usage example for multiple filtersPedro Vicente Nunes2007-11-291-2/+2
| | | | | | to note that SHUF should be used before GZIP and that the order specified in command line is the order filters are applied tested: windows, linux
* [svn-r14310] error check in command line: check for a wrong input of the 2 ↵Pedro Vicente Nunes2007-11-291-0/+8
| | | | | | file names being the same tested: windows, linux
* [svn-r14305] updated commentsPedro Vicente Nunes2007-11-291-0/+2
| | | | tested: windows, linux
* [svn-r14300] new feature: add a mention of multiple filters use in usagePedro Vicente Nunes2007-11-281-0/+4
| | | | tested: windows, linux
* [svn-r14299] new feature: add support for h5repack to handle several global ↵Pedro Vicente Nunes2007-11-281-392/+181
| | | | | | | | filters usage is to repeat the -f option tested: windows, linux, solaris
* [svn-r14292] enhancement: clarify usage of the -s optionPedro Vicente Nunes2007-11-261-2/+2
| | | | tested: windows, linux
* [svn-r14291] enhancement: clarify the usage of the -m optionPedro Vicente Nunes2007-11-261-2/+2
| | | | tested: windows, linux, solaris
* [svn-r14269] bug fix: in the usage message example syntaxPedro Vicente Nunes2007-11-191-1/+1
| | | | tested: linux
* [svn-r14268] enhancement: commnents and correct syntax for h5repack optionsPedro Vicente Nunes2007-11-191-4/+6
| | | | tested: linux
* [svn-r14264] new features: 1) new usage for h5diff " A la" h5dump formatPedro Vicente Nunes2007-11-161-178/+493
| | | | | | 2) new usage for h5repack and new command line parsing using the tools library parsing code tested: windows, linux, solaris
* [svn-r14226] new feature: add a -V version option to hrepack Pedro Vicente Nunes2007-10-311-2/+6
| | | | tested: windows, linux
* [svn-r13975] Add --latest, -compact=<size>, ... options to use the lastest ↵Peter Cao2007-07-131-2/+62
| | | | | | file format. Add test for the options to the daily test.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12884] Pedro Vicente Nunes2006-11-081-4/+0
| | | | | | | | | | | | h5repack support for H5Ocopy in the copy of objects. The old method for recreating references was dropped (references recreated in a second traversal of the file) The logic for using H5Ocopy or not is if the input DCPL has filters or non default layout OR these are requested by the user THEN use the old h5repack read / write ELSE use H5Ocopy
* [svn-r12786] Pedro Vicente Nunes2006-10-191-85/+89
| | | | | a more improved usage message, specially on the filter and layout information
* [svn-r12785] Pedro Vicente Nunes2006-10-191-14/+20
| | | | added a new much more readable usage message
* [svn-r12784] Pedro Vicente Nunes2006-10-191-2/+8
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12736] Description:Quincey Koziol2006-10-091-1/+1
| | | | | | | | | | | | | | | | | | | Add "use the latest format" support for dataspace object header encode/ decode routines and clean up format a bit for the latest format (new to 1.8.x releases) Remove storing 'perm' parameter for array datatypes in memory and the file, and add test to make certain that if any user applications are attempting to store them, we get some reports back. (Should be unlikely, since the RefMan says that the parameter is not implemented and is unsupported). Carry those changes into the tests, etc. Clean up a bunch more compiler warnings. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-1.6-compat
* [svn-r12720] Pedro Vicente Nunes2006-10-051-1/+11
| | | | | | added output of error messages using the tools library function error_msg, that prints the program name and error on the message tested: kagiso
* [svn-r12159] Purpose:Pedro Vicente Nunes2006-03-271-1/+3
| | | | | | | | | | | | | | | | | bug fix Description: h5repack was not dealing with family files Solution: use the toolslib function h5tools_open to open the file instead of H5Fopen in h5repack Platforms tested: linux solaris AIX Misc. update:
* [svn-r12128] Purpose:Quincey Koziol2006-03-221-0/+1
| | | | | | | | | | | Code cleanup Description: Clean up some compiler warnings (esp. those flagged on Windows builds) Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11886] Purpose:Quincey Koziol2006-01-231-11/+11
| | | | | | | | | | | | | Code cleanup Description: Check in some of the code cleanups from working on the external link support. (This doesn't include any of the external link features) Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX.4 (amazon) Linux 2.4
* [svn-r11443] Purpose:Pedro Vicente Nunes2005-09-191-5/+17
| | | | | | | | | | | | | | | | | | | | | | new features Description: added support for the scale/offset filter there is a new filter symbol 'SOFF' -f SOFF=<scale_factor,scale_type> scale_factor = integer scale_type = 'IN' or 'DS' Solution: Platforms tested: Linux SunOS Misc. update:
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-17/+17
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10009] Purpose:Robert E. McGrath2005-02-151-0/+2
| | | | | | | | | | | | | | | feature Description: support for nbit compression in h5repack Solution: Platforms tested: verbena,copper,shanti Misc. update: manifest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r8909] Purpose:Pedro Vicente Nunes2004-07-201-1/+2
| | | | | | | | | | | | | | | | update documentation and usage message Description: updated the html documentation for the new h5diff modes added a section for h5repack Solution: Platforms tested: linux Misc. update:
* [svn-r8904] Purpose:Pedro Vicente Nunes2004-07-201-8/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5diff and h5repack changes Description: h5diff introduced the following four modes of output: Normal mode: print the number of differences found and where they occured Report mode: print the above plus the differences Verbose mode: print the above plus a list of objects and warnings Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found) h5repack added an extra parameter for SZIP filter (coding method) the new syntax is -f SZIP=<pixels per block,coding> (pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN') Example of use: ./h5repack -i file1 -o file2 -f SZIP=8,NN -v updated usage messages, test scripts and files accordingly Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8882] Purpose:Pedro Vicente Nunes2004-07-151-2/+4
| | | | | | | | | | | | | | | | | | | | | | | | bug fix, new feature Description: fixed bug in the parse function: cases where we have an already inserted name but there is a new name also example: -f dset1:GZIP=1 -l dset1,dset2:CHUNK=20x20 dset1 is already inserted, but dset2 must also be (it was not) added a CHECK_SZIP symbol to enable/disable checking of library related szip parameters added the print of the filter name in verbose mode (confirms visually that the filter was applied ) Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8383] Purpose:Quincey Koziol2004-04-181-1/+1
| | | | | | | | | | | | | Code cleanup Description: Clean up lots of warnings based on those reported from the SGI compilers as well as gcc. Platforms tested: SGI O3900, IRIX64 6.5 (Cheryl's SGI machine) FreeBSD 4.9 (sleipnir) w/ & w/o parallel h5committest
* [svn-r8311] Purpose:Pedro Vicente Nunes2004-04-061-4/+0
| | | | | | | | | | | | | cleaned some comments and printfs Description: Solution: Platforms tested: linux Misc. update:
* [svn-r8232] Purpose:Pedro Vicente Nunes2004-03-041-13/+8
| | | | | | | | | | | | | | | | new feature Description: added a check for the return value of the tools h5repack and h5diff in the run script. the return value is used to print PASSED (tool returns 0) or FAILED Solution: Platforms tested: linux Misc. update:
* [svn-r8229] Purpose:Pedro Vicente Nunes2004-03-021-3/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) new function for tools library 2) new test script for h5repack Description: 1) currently all the tools (h5dump, h5diff, etc) do not check if a filter is available for reading some dataset that might have a filter not available on the current configuration (the behaviour of the tools until now was to trigger a library error, saying that the dataset cannot be read due to the lack of the filter) Solution: 1) added a new function h5tools_canreadf that checks if a dataset can be read depending on the availability of filters. this function was added in calls for h5diff and h5repack. instead of triggering the library error, a message is printed, saying that the dataset cannot be read (the print is optional, it is on on verbose mode) 2) added a shell script that tests the commannd line tool behaviour of h5repack the script does a series of runs of h5repack with several options on the same file (this file test4.h5 was added to the testfiles dir). then, it runs the h5diff tool, with the input and output files , in each run. the goal of the test is also to check item 1) . the binary file was saved with filters that might not be available on other configurations Platforms tested: linux (all filters enabled) linux (some filters disabled) solaris (some filters disabled) AIX (some filters disabled) windows (all filters on and off ) Misc. update:
* [svn-r8121] Purpose:Pedro Vicente Nunes2004-01-281-3/+3
| | | | | | | | | | | | | | | | bug fix Description: avoid reading and writing data when one of the dimensions is 0 (attributes case ) Solution: linux solaris AIX Platforms tested: Misc. update:
* [svn-r8062] Purpose:Pedro Vicente Nunes2004-01-141-0/+5
| | | | | | | | | | | | | | | | bug fix Description: cases of rank 0 were not handled, now a warning is made that the dataset cannot be compressed Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8060] Purpose:Pedro Vicente Nunes2004-01-141-4/+38
| | | | | | | | | | | | | | | added a usage message for h5repack Description: Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8040] Purpose:Pedro Vicente Nunes2004-01-081-4/+4
| | | | | | | | | | | | | | | | | bug fix, code improvment Description: fixed a bug in the parse of chunking function added some auxiliary functions to avoid repeated parts of the code in several places Solution: Platforms tested: linux solaris AIX Misc. update:
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