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* Correct 1.8 version of reference fileAllen Byrne2016-10-191-7/+7
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* Fix reference file valueAllen Byrne2016-10-191-1/+1
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* revert back reference fileAllen Byrne2016-10-191-1/+1
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* Add new test file for UD filtersAllen Byrne2016-10-193-1/+173
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* Update new test file referencesAllen Byrne2016-09-291-0/+3
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* Merge/align with trunkAllen Byrne2016-09-281-0/+13
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* HDFFV-9974: Correct parsing of UD filter parameters.Allen Byrne2016-09-271-0/+9
| | | | | Verified by user, who reported issue. merge from https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/commits/b947f7e911e498f5455a78836a6f82a042dd5b33
* [svn-r29309] HDFFV-9698, HDFFV-9241, HDFFV-9570: Merge fixes from trunk for ↵Allen Byrne2016-03-073-21/+21
| | | | subsetting index, default fill value display, and optional arg crash. Also some minor compiler warnings fixes.
* [svn-r26752] Merged r26750 and r26751 from trunk.Albert Cheng2015-04-073-0/+5
| | | | | | | | | HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type. Added the testing to h5repack where it belongs. Undo the tests added to h5dump. Tested: h5committested plus tested in jam by hand.
* [svn-r24746] Merge trunk revision 24744 from cmake branch includes;Allen Byrne2014-02-273-0/+144
| | | | | | HDFFV-8505: UD filter changes to remove filters in h5repack. Tested: local linux
* [svn-r24680] Remove acknowledgment file from install.Allen Byrne2014-02-032-2/+2
| | | | | | | Remove obsolete CPack.cmake file. Merge h5repack and h5mkgrp test folder changes from trunk. Tested: local linux
* [svn-r24205] Merge HDFFV-8513/8522 from trunk (via cmake branch), h5repack ↵Allen Byrne2013-09-264-5/+185
| | | | | | | | UD plugins. Also warning session fixes. Tested: CMake local linux
* [svn-r24108] Remove file from the future.Allen Byrne2013-09-061-158/+0
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* [svn-r24106] Add help text tests for h5dump and h5repack to the linux ↵Allen Byrne2013-09-065-92/+968
| | | | | | scripts. HDFFV-8498 merge from trunk. Tested: local linux - cmake and autotools
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-261-0/+130
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r22814] Purpose:Jonathan Kim2012-09-261-0/+0
| | | | | | | | | | | | | | HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim Description: "h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim. Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim. These issue occurred when dataset size is smaller than 64k (compact size limit) Fixed them. Merged from HDF5 trunk r22805 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22281] Purpose:Jonathan Kim2012-04-111-0/+0
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21400] Purpose:Jonathan Kim2011-09-201-0/+0
| | | | | | | | | | | | | HDFFV-5932 - h5repack breaks files with dimension scales Description: - Fixed h5repack to update values of references(object and region) of attributes in h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references. - Merged from HDF5 trunk 21393, 21382, 21386, 21389. (support Peter) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE)
* [svn-r21151] Description:Jonathan Kim2011-07-261-0/+0
| | | | | | | | | | | | | Merged from HDF5 trunk r21105 Fixed two bugs: - h5repack: h5repack failed to copy dataset if the layout is changed from c hunked with unlimited dims to contiguous. (PC -- 2011/07/15) - h5diff: "--delta" option considers two NaN of the same type are different , which is wrong based on http://www.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Diff. (PC -- 2011/07/15) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19391] Purpose:Jonathan Kim2010-09-151-0/+0
| | | | | | | | | | | Fix for Bug1896 h5repack - changing layout to COMPACT does not work Description: Merged from hdf5 trunk (r19389) Make h5repack be able to convert a layout to COMPACT for small size dataset as default. Also add verifying layout changes in our test script. Tested: jam, amani
* [svn-r18455] Purpose:Jonathan Kim2010-03-251-0/+0
| | | | | | | | | | | Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE. Description: Merged from hdf5 trunk rXXX Tested: jam
* [svn-r18427] Purpose:Jonathan Kim2010-03-181-0/+0
| | | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: Merged from hdf5 trunk r18425 handles object reference to named-datatype as well. Add test cases. Tested: jam
* [svn-r16802] Purpose: Fix bug 1516Neil Fortner2009-04-201-0/+0
| | | | | | | | | | | Description: h5repack previously would not take named datatypes into consideration when copying datasets and attributes. This would cause extra anonymous datatypes in the target file at best, and cause errors halfway through the repacking at worst. h5repack should now always handle named datatypes correctly. Named datatypes are also now converted to the native type when -n is given. Tested: jam, linew, smirom (h5committest)
* [svn-r16641] merge from trunk revs 16614, 16629Pedro Vicente Nunes2009-04-011-0/+0
| | | | | | | | | | | 1. #1501 (B1) tools bug if dataset is larger than H5TOOLS_BUFSIZE limit. ISSUE : the tools use the following formula to read by hyperslabs: hyperslab_size[i] = MIN( dim_size[i], H5TOOLS_BUFSIZE / datum_size) where H5TOOLS_BUFSIZE is a constant defined of 1024K. This is OK as long as the datum_size does not exceed 1024K, otherwise we have a hyperslab size of 0 (since 1024K/(greater than 1024K) = 0). This affects h5dump. h5repack, h5diff SOLUTION: add a check for a 0 size and define as 1 if so. TEST FOR H5DUMP: Defined a case in the h5dump test generator program of such a type (an array type of doubles with a large array dimension, that was the case the user reported). Since the written file commited in svn would be around 1024K, opted for not writing the data (the part of the code where the hyperslab is defined is executed, since h5dump always reads the files). Defined a macro WRITE_ARRAY to enable such writing if needed. Added a run on the h5dump shell script. Added 2 new files to svn: tools/testfiles/tarray8.ddl, tools/testfiles/tarray8.h5. NOTE: while doing this I thought of adding this dataset case to an existing file, but that would add the large array output to those files (the ddls). The issue is that the file list is increasing. TEST FOR H5DIFF: for h5diff the check for reading by hyperslabs is H5TOOLS_MALLOCSIZE (128 * H5TOOLS_BUFSIZE) or 128 Mb. This makes it not possible to add such a file to svn, so used the same method as h5dump (only write the dataset if WRITE_ARRAY is defined). As opposed to h5dump, the hyperslab code is NOT executed when the dataset is empty (dataset is not read). Added the new dataset to existing files and shell run (tools/h5diff/testfiles/h5diff_dset1.h5 and tools/h5diff/testfiles/h5diff_dset2.h5 and output in tools/h5diff/testfiles/h5diff_80.txt). TEST FOR H5REPACK: similar issue as h5diff with the difference that the hyperslab code is run. Added a run to the shell script (with a filter, otherwise the code uses H5Ocopy). FURTHER ISSUES: the type in question ("double") has a different output cross platforms (e.g on liberty some garbage number is printed at some array locations) SOLUTION: defined an "int" type for this test. However the printing of such an array has a bogus output at least in one platform (FreeBsd), so eliminated the test run altogether and filed a bug report on this
* [svn-r16402] Description:Quincey Koziol2009-02-031-0/+0
| | | | | | | | | | | Bring r16401 back from trunk: Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r15750] move h5repack test files to /tools/h5repack/testfilesPedro Vicente Nunes2008-10-0117-0/+2
tested: linux
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