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* [svn-r12826] Pedro Vicente Nunes2006-10-301-17/+18
| | | | | added a new test for h5diff relative error for the file generator program
* [svn-r12793] 1. fix a compiling error in atlantiaPedro Vicente Nunes2006-10-201-3/+2
| | | | | 2. added the test library delete framework to delete output .h5 files 3. cleaned warnings
* [svn-r12784] Pedro Vicente Nunes2006-10-191-23/+147
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12721] Pedro Vicente Nunes2006-10-051-1/+1
| | | | corrected commnet
* [svn-r12700] Alert:Quincey Koziol2006-10-021-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-6/+13
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r11886] Purpose:Quincey Koziol2006-01-231-0/+3
| | | | | | | | | | | | | Code cleanup Description: Check in some of the code cleanups from working on the external link support. (This doesn't include any of the external link features) Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX.4 (amazon) Linux 2.4
* [svn-r11388] Purpose:Pedro Vicente Nunes2005-09-121-2/+6
| | | | | | | | | | | | | | | bug fix Description: during the generation of some test files, H5Fclose was not called during the #ifdef detection of the scale ofsset filter, a wrong macro symbol was used Solution: Platforms tested: linux Misc. update:
* [svn-r11337] Purpose:Quincey Koziol2005-09-011-1/+1
| | | | | | | | | | | | Code cleanup Description: Changed some scale+offset filter symbols from H5_SO_... -> H5Z_SO_... to indicate that they are in the H5Z package. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11328] Purpose:MuQun Yang2005-08-311-1/+1
| | | | | | | | | | | | code change due to the change of scale offset filter Description: Solution: Platforms tested: Misc. update:
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-104/+104
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11017] Purpose:Pedro Vicente Nunes2005-07-051-1/+1
| | | | | | | | | | | | | | | bug fix Description: a string buffer did not had space for the trailing null Solution: add one more element to the buffer Platforms tested: linux Misc. update:
* [svn-r10678] Purpose:MuQun Yang2005-04-271-1/+1
| | | | | | | | | | | | | | | Update usage of H5Pset_scaleoffset. Description: H5Pset_scaleoffset API is changed due to addition of the floating-point filter. Solution: Only add a parameter, nothing should change for the tool. Platforms tested: Linux 2.4 Misc. update:
* [svn-r10067] Purpose:Robert E. McGrath2005-02-231-0/+102
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: h5repack support for scaleoffset compression Checking in early to help debug the filter. Solution: Added messages and command line to handle new scale offset filter. Note: TESTS ARE DISABLED FOR NOW. The filter is not complete, repack tests may fail due to know problems. PLEASE DO NOT MESS WITH THE SCALEOFFSET TESTS AT THIS TIME. They will be enabled when the filter is ready. Platforms tested: verbena,copper,shanti Misc. update: MANIFEST
* [svn-r10009] Purpose:Robert E. McGrath2005-02-151-0/+136
| | | | | | | | | | | | | | | feature Description: support for nbit compression in h5repack Solution: Platforms tested: verbena,copper,shanti Misc. update: manifest
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-4/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9496] Purpose:Robert E. McGrath2004-11-021-3/+27
| | | | | | | | | | | | | | | | | | | | | | Fix SZIP filter to dynmically detect encoder. Description: Solution: See: http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf Changes to h5repack tests, contingent on detecting SZIP encoder. Note new program: testh5repack_detect_szip Checks fo rencoder, prints out "yes" or "no". Used by hrepack.sh to detect encoder. Can also be used for windows tests. This is only used as part of the tests. Had to modify Makefile to build and clean this program.
* [svn-r9146] Purpose:Pedro Vicente Nunes2004-08-241-4/+3
| | | | | | | | | | | | | | | | | | | h5repack test Description: modified a test file generation contents, for more easy debugging (generated just one reference dataset and one region reference ) Solution: Platforms tested: linux aix solaris Misc. update:
* [svn-r9137] Purpose:Pedro Vicente Nunes2004-08-231-26/+53
| | | | | | | | | | | | | | | | | | new test Description: added a test that generates and copies a file with a dataset with fill value (this is to test the property list function H5Pequal) Solution: Platforms tested: linux solaris aix Misc. update:
* [svn-r8904] Purpose:Pedro Vicente Nunes2004-07-201-2/+65
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5diff and h5repack changes Description: h5diff introduced the following four modes of output: Normal mode: print the number of differences found and where they occured Report mode: print the above plus the differences Verbose mode: print the above plus a list of objects and warnings Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found) h5repack added an extra parameter for SZIP filter (coding method) the new syntax is -f SZIP=<pixels per block,coding> (pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN') Example of use: ./h5repack -i file1 -o file2 -f SZIP=8,NN -v updated usage messages, test scripts and files accordingly Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8869] Purpose:Pedro Vicente Nunes2004-07-131-6/+502
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5repack changes Description: there were some requests to change some minor h5repack features h5repack only made a warning about a non available filter in verbose mode ( -v ) without -v it kept silent, and users sometimes missed this warning the request was that it should print this warning always. so, the new format, is e.g ./h5repack -i test_szip.h5 -o out.h5 Warning: dataset </dset_szip> cannot be read, SZIP filter is not available due to this, and to avoid a lot of these messages in the shell test script, I modified the script h5repack.sh so that it detects the presence of all filters in the environment (previously it only detected SZIP) the test files were also divided in more files , to make the script code easier to follow Solution: Platforms tested: linux AIX (no szip) solaris (no szip, no gzip ) Misc. update:
* [svn-r8582] *** empty log message ***Raymond Lu2004-05-261-1/+2
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* [svn-r8383] Purpose:Quincey Koziol2004-04-181-13/+12
| | | | | | | | | | | | | Code cleanup Description: Clean up lots of warnings based on those reported from the SGI compilers as well as gcc. Platforms tested: SGI O3900, IRIX64 6.5 (Cheryl's SGI machine) FreeBSD 4.9 (sleipnir) w/ & w/o parallel h5committest
* [svn-r8333] Purpose:Pedro Vicente Nunes2004-04-091-0/+106
| | | | | | | | | | | | | | | new test Description: add a test that generates a file with "holes" and then uses h5repack to clean the empty space. it works Solution: Platforms tested: linux Misc. update:
* [svn-r8320] Purpose:Pedro Vicente Nunes2004-04-081-2/+0
| | | | | | | | | | | | | | | | new tests for h5repack Description: added more tests both to the test program and shell script that test a variation of different filter converssions Solution: Platforms tested: linux Misc. update:
* [svn-r8318] Purpose:Pedro Vicente Nunes2004-04-071-6/+3
| | | | | | | | | | | | | | | | | | | | new tests for h5repack Description: added tests that do layout type to layout type conversion in a matrix of 9 between compact, contiguous and chunking Solution: Platforms tested: linux afs has problems; I could not telnet to sol and copper, arabica is really slow (meaning waiting 1 minute for a typed character) and the writing of a file gave an error arabica 181% afs: failed to store file (145) afs: failed to store file (145) Misc. update:
* [svn-r8218] Purpose:Pedro Vicente Nunes2004-02-231-21/+17
| | | | | | | | | | | | | | | | | | | | | | | | bug fix in H5Zshuffle.c add more tests to h5repack that exposed the bug Description: when creating a dataset with the shuffle filter and duplicating it in a new dataset (file) the call to H5Z_set_local_shuffle failed. this is because the value of cd_nelmts of the filter structure is set to 1 (H5Z_SHUFFLE_TOTAL_NPARMS) when the original dataset is created, but when the new dataset is created there is a checking instruction that fails if the value of cd_nelmts is not 0 (its original value, H5Z_SHUFFLE_USER_NPARMS) Solution: just remove that check condition, since the value of cd_nelmts is not used anyway. if we decide that the value of cd_nelmts is necessary, then the H5O_pline_copy function must be changed to update this value (a different update for each filter) Platforms tested: linux solaris AIX Misc. update:
* [svn-r8074] Purpose:Pedro Vicente Nunes2004-01-161-3/+3
| | | | | | | | | | | | | | | | | | | added h5repack and h5diff support for copying and differences of references to dataset regions modified the behaviour in the diff of attributes, when a difference in name is detected in the attribute cycle (number of attributes of object), instead of exiting the cycle, rather continue Description: Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r7996] Purpose:Pedro Vicente Nunes2003-12-301-14/+0
| | | | | | | | | | | | | | | | h5repack new features Description: added support for shuffle and checksum filters Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r7994] Purpose:Pedro Vicente Nunes2003-12-291-0/+318
h5repack new features Description: added checking routines for the filters that were applied to the output file added tests for szip filter Solution: Platforms tested: linux solaris (IRIX is not available) : Misc. update:
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