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* [svn-r25497] Description:Quincey Koziol2014-07-304-39/+40
| | | | | | | | | | Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25402] Bring 25397/8 from trunk:Mohamad Chaarawi2014-07-101-1/+0
| | | | | | | - remove configure checks for MPI_File_get_size and Big MPI_File_set_size as they are supported by MPIO implementations today. - fix bug in t_mpi.c (HDFFV-8856) tested with h5committest.
* [svn-r25222] Merge cmake_ext_mod into 1.8Allen Byrne2014-05-272-9/+9
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* [svn-r25111] Changed Subeversion EOL and executable properties. No code changes.Dana Robinson2014-04-251-3/+3
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* [svn-r25106] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | back fix for removing rpaths from lib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath configure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and on emu and kite.
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-072-77/+443
| | | | Tested: h5committest
* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-265-416/+508
| | | | Tested: local linux
* [svn-r24894] Description:Quincey Koziol2014-03-251-104/+95
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24869 & r24875 from trunk to 1.8 branch: Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (daily tested on trunk)
* [svn-r24878] Description:Quincey Koziol2014-03-241-1/+0
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24746] Merge trunk revision 24744 from cmake branch includes;Allen Byrne2014-02-275-0/+155
| | | | | | HDFFV-8505: UD filter changes to remove filters in h5repack. Tested: local linux
* [svn-r24732] Fix for reconfigure, which fails because ↵Larry Knox2014-02-221-0/+1
| | | | | | LT_ADD_LIBHDF5_DEPENDENCY is used in Makefiles but the declaration in configure.ac is missing. Copied declaration from trunk. Tested with h5committest on jam ostrich koala and platypus(cmake).
* [svn-r24680] Remove acknowledgment file from install.Allen Byrne2014-02-035-73/+88
| | | | | | | Remove obsolete CPack.cmake file. Merge h5repack and h5mkgrp test folder changes from trunk. Tested: local linux
* [svn-r24395] Missed script file for cleanupAllen Byrne2013-11-011-0/+17
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* [svn-r24393] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-1/+18
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autotools
* [svn-r24205] Merge HDFFV-8513/8522 from trunk (via cmake branch), h5repack ↵Allen Byrne2013-09-2620-3812/+4811
| | | | | | | | UD plugins. Also warning session fixes. Tested: CMake local linux
* [svn-r24108] Remove file from the future.Allen Byrne2013-09-061-158/+0
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* [svn-r24106] Add help text tests for h5dump and h5repack to the linux ↵Allen Byrne2013-09-069-107/+1057
| | | | | | scripts. HDFFV-8498 merge from trunk. Tested: local linux - cmake and autotools
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-268-941/+1170
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24012] Description:Quincey Koziol2013-08-151-1/+1
| | | | | | | | | | Bring r24011 from trunk to 1.8 branch: Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r23965] Corrected "continuous" layout to "contiguous" in h5repack -h ↵Larry Knox2013-08-022-2/+2
| | | | | | | | output and comment. Jira issue HDFFV-8493. No test - text only change.
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+3
| | | | Tested: local linux
* [svn-r23464] Purpose: Jonathan Kim2013-03-273-10/+24
| | | | | | | | | | | | | HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. Description: h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks. The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout. Merged from HDF5 trunk 23407 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE), fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r23460] Add missing infile assignment and error countsAllen Byrne2013-03-261-0/+2
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* [svn-r23459] HDFFV-8355 h5repack.sh was wrong for the two test cases.Peter Cao2013-03-261-3/+17
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* [svn-r23324] Snapshot version 1.8 release 11 (snap11)HDF Tester2013-03-041-1/+1
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* [svn-r23318] HDFFV-8311: Improve tools testing and eliminate dependency problemsAllen Byrne2013-02-251-153/+204
| | | | Tested: local linux
* [svn-r23301] Allen Byrne2013-02-181-170/+227
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-1/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r22814] Purpose:Jonathan Kim2012-09-266-22/+143
| | | | | | | | | | | | | | HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim Description: "h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim. Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim. These issue occurred when dataset size is smaller than 64k (compact size limit) Fixed them. Merged from HDF5 trunk r22805 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-282-21/+19
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22719] Fix RelWithDebInfo packagingAllen Byrne2012-08-281-1/+1
| | | | Tested: windows
* [svn-r22711] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-231-39/+93
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22647] Description:Quincey Koziol2012-08-092-2/+2
| | | | | | | | | | | Bring r22646 from trunk to 1.8 branch: Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22621] Purpose:Jonathan Kim2012-08-021-6/+17
| | | | | | | | | | | | | | | | HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Merged from HDF5 trunk r22617. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22475] Remove subfolder tools from install commandAllen Byrne2012-06-191-2/+2
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* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-111-0/+3
| | | | Tested jam, local linux
* [svn-r22374] Purpose: Jonathan Kim2012-05-161-5/+10
| | | | | | | | | | | | | Fix h5repacktst (test file generating binary) to address HDFFV-8016 h5repacktst failed in AIX 32bit mode Description: Segmentation fault occurred when h5repacktst try to generate a dataset when system memory is limited to 256MB. Add error handling to display apporiate message to exit and adjust the test dataset according to the original size which didn't causing out of memory. Tested: test was done by limit memory in csh. jam (linux32-LE), ostrich (linuxppc64-BE)
* [svn-r22281] Purpose:Jonathan Kim2012-04-119-23/+232
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-7/+63
| | | | Tested: local linux
* [svn-r22225] Description:Quincey Koziol2012-04-012-8/+33
| | | | | | | | | | | | Bring r22220, r22221 & r22224 from trunk to 1.8 branch: improved h5repack metadata block size testing, and some code cleanups. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22216] Description:Quincey Koziol2012-03-316-86/+124
| | | | | | | | | | | | | Bring r22180, r22181 and r22214 from trunk to 1.8 branch: Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. [With release managers blessing] Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-261-0/+0
| | | | in, and HDF5 files.
* [svn-r22031] Purpose:Jonathan Kim2012-03-061-57/+269
| | | | | | | | | | | | | | | | Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack Description: h5repack sometimes became very slow when handling big chunked datasets in certain cases. (when chunk boundary doesn't match with a hyperslab boundary.) The main issue was from figuring out a hypeslab without considering chunk boundary to read from and write to such datasets. The update was made to figure out a better hyperslab unit with considering chunk boundary to improve performance for such cases prior to the update. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
* [svn-r22025] Cleanup compiler warnings.Allen Byrne2012-03-051-14/+14
| | | | | | Add HD prefix to tools library based tests. Cleaned allocation/free in tests. Tested: local linux/ h5committetest
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-0210-120/+139
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r21901] Purpose:Jonathan Kim2012-01-301-63/+74
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5repack cmake test. Description: Update cmake script to clean up correctly. Revisit h5repack cmake test script updated from r21870. Also sync with HDF5 trunk. (Jira 2605) Tested: cmake test for Windows (32-LE) and jam (linux32-LE)
* [svn-r21873] Update a comment to make clear from the previous commit ↵Jonathan Kim2012-01-111-2/+3
| | | | (r21870) for HDFFV-7840.
* [svn-r21870] Purpose:Jonathan Kim2012-01-104-57/+87
| | | | | | | | | | | | | | | Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Merged from HDF5 trunk r21869. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21805] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-051-1/+1
| | | | standard 2.8.6
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-041-0/+3
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
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