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* [svn-r13757] Pedro Vicente Nunes2007-05-162-48/+66
| | | | | | | | | | | h5repack and h5diff hyperslab I/O changed the limit on which hyperslab I/O is done from 1GB to 128MB h5repack currently tests this feature by defining a dataset with dimensions of 128MB + 1byte (the datum being 1 byte integer), in which a 1Kb hyperslab was written. tested: linux there were some errors in running the tests, but these were in the library, due to a recent check-in that will be fixed shortly (at least we hope :-) )
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-091-81/+65
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13589] Pedro Vicente Nunes2007-04-0411-17/+17
| | | | | | h5repack code cleaning (required reconfigure) tested: linux (32, 64, parallel), solaris
* [svn-r13582] Pedro Vicente Nunes2007-04-032-16/+13
| | | | | | | | Bug fix Substitute a malloc call for a calloc call while allocating a reference buffer Add a test for an empty reference case Tested linux
* [svn-r13578] Pedro Vicente Nunes2007-04-031-1/+1
| | | | | | Cast a malloc call to the correct type Tested linux
* [svn-r13573] Pedro Vicente Nunes2007-04-022-16/+90
| | | | | | | | | | | | Bug fixes Reset external file list slots name_offset to a state when created (0) in H5P_dcrt_copy so that it conforms to an assertion in H5D_update_entry_info that assumes the name_offset is 0 at this point this fixes the problem of h5repack and external files, add a new test and files for an external file h5diff, check for an error return in H5D_get_storage_size tested linux 32, 64
* [svn-r13483] Pedro Vicente Nunes2007-03-091-6/+5
| | | | | | | | Bug fix Some data was declared as char and saved with H5T_NATIVE_CHAR type. But the data have negative values Solution : declared data as signed char and used H5T_NATIVE_SCHAR
* [svn-r13460] removed a debugging macroPedro Vicente Nunes2007-03-051-3/+0
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* [svn-r13452] one test was commneted by mistakePedro Vicente Nunes2007-03-051-3/+0
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* [svn-r13451] Pedro Vicente Nunes2007-03-054-852/+69
| | | | | | | h5diff bug fix, attributes differences were not being count for total differences Revision of H5Ocopy call in h5repack
* [svn-r13441] Pedro Vicente Nunes2007-03-017-521/+1366
| | | | make 1.7 h5repack more similar to 1.6 h5repack
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13297] Description:Quincey Koziol2007-02-142-2/+2
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-132-2/+2
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13261] Updated copyright notices.Albert Cheng2007-02-071-2/+3
| | | | Tested: visual inspection as they are all just comments.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0711-22/+33
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13106] clean code, removed some debugging codePedro Vicente Nunes2007-01-041-22/+0
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* [svn-r13030] Pedro Vicente Nunes2006-12-071-8/+6
| | | | | | warnings clean ../../../hdf5/tools/h5repack/h5repack_opttable.c:240: warning: passing arg 2 of `aux_tblinsert_layout' as signed due to prototype
* [svn-r13029] Pedro Vicente Nunes2006-12-071-7/+7
| | | | | | | | warnings clean ../../../hdf5/tools/h5repack/h5repack_copy.c:615: warning: passing arg 3 of `print_dataset_info' as `float' rather than `double' due to prototype introduced double precision arithmetic
* [svn-r12953] h5repack code revision, avoid one unnecessary call to file ↵Pedro Vicente Nunes2006-11-201-141/+144
| | | | open/close in the cheking of objects when there are none requested by the user
* [svn-r12950] Pedro Vicente Nunes2006-11-201-27/+2
| | | | | do not call H5Ocopy only when there is a user request for filters/layout
* [svn-r12936] Pedro Vicente Nunes2006-11-174-341/+339
| | | | make h5repacktst clean a big file which name was changed to "h5repack_big_out.h5", do not use H5Ocopy only when the original DCPL has filters or a request is made for such, more code cleaning
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12928] code revisionPedro Vicente Nunes2006-11-168-40/+80
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* [svn-r12918] Pedro Vicente Nunes2006-11-153-4477/+4480
| | | | removed whitespace
* [svn-r12917] Pedro Vicente Nunes2006-11-1512-4677/+4570
| | | | | | | | h5repack revision: 1. added a new test due to the introduction of H5Ocopy in the copy of objects (compressed dataset with references, that still must go a second sweep of the file to be regenerated). 2. Moved all the source files from the h5repack test program to a new file h5repacktst.c and removed the old ones (testh5repack*.c). 3. Renamed the binary files from test*.h5 to h5repack*.h5 for easy reference. 4. Modified the shell script to use variables for file names instead of hard coded names
* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12888] Pedro Vicente Nunes2006-11-104-104/+768
| | | | | Introduced the second sweep of the file for a case a reference is present and H5Ocopy was not used. Moved the code from file h5repack_refs.c to h5repack_copy.c and removed the first file
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+1
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12884] Pedro Vicente Nunes2006-11-084-967/+369
| | | | | | | | | | | | h5repack support for H5Ocopy in the copy of objects. The old method for recreating references was dropped (references recreated in a second traversal of the file) The logic for using H5Ocopy or not is if the input DCPL has filters or non default layout OR these are requested by the user THEN use the old h5repack read / write ELSE use H5Ocopy
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-081-7/+9
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12826] Pedro Vicente Nunes2006-10-301-17/+18
| | | | | added a new test for h5diff relative error for the file generator program
* [svn-r12815] Pedro Vicente Nunes2006-10-251-1/+4
| | | | | | | | | | | | | | 1) added a new parameter to the h5diff function diff_array that contains the beginning position of the hyperslab, so that the total position in the array is printed correctly when reading by hyperslabs. 2) added a new test to h5diff that reads and diffs by hyperslabs. The test reads a 1GB dataset, from which a 1KB hyperslab was written with differences . 3) added the generation of 2 files to the generator program to test the h5diff hyperslab read. 4) changed the h5diff binary pre-generated file names to be more descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5) 5) changed the name of the h5repack options text file to info.h5repack
* [svn-r12794] Pedro Vicente Nunes2006-10-201-16/+4
| | | | | 1. bug fix. the h5_cleanup file names were not build properly on the h5repacktest call 2. added only a call to test_bigout.h5 to be clean, because the other files are generated anyway by the shell script. test_bigout.h5 is only made on the C program part (h5repacktst)
* [svn-r12793] 1. fix a compiling error in atlantiaPedro Vicente Nunes2006-10-206-38/+65
| | | | | 2. added the test library delete framework to delete output .h5 files 3. cleaned warnings
* [svn-r12786] Pedro Vicente Nunes2006-10-191-85/+89
| | | | | a more improved usage message, specially on the filter and layout information
* [svn-r12785] Pedro Vicente Nunes2006-10-191-14/+20
| | | | added a new much more readable usage message
* [svn-r12784] Pedro Vicente Nunes2006-10-198-188/+448
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is ↵James Laird2006-10-101-2/+2
| | | | | | | | | | only tested if it is enabled. Added Direct VFD status to the configure summary. Removed a line left over from pablo support. Oops!
* [svn-r12736] Description:Quincey Koziol2006-10-099-75/+62
| | | | | | | | | | | | | | | | | | | Add "use the latest format" support for dataspace object header encode/ decode routines and clean up format a bit for the latest format (new to 1.8.x releases) Remove storing 'perm' parameter for array datatypes in memory and the file, and add test to make certain that if any user applications are attempting to store them, we get some reports back. (Should be unlikely, since the RefMan says that the parameter is not implemented and is unsupported). Carry those changes into the tests, etc. Clean up a bunch more compiler warnings. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-1.6-compat
* [svn-r12726] Pedro Vicente Nunes2006-10-061-10/+5
| | | | added calls for the scale offset filter to the h5repack test script
* [svn-r12721] Pedro Vicente Nunes2006-10-051-1/+1
| | | | corrected commnet
* [svn-r12720] Pedro Vicente Nunes2006-10-058-66/+88
| | | | | | added output of error messages using the tools library function error_msg, that prints the program name and error on the message tested: kagiso
* [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' ↵James Laird2006-10-031-0/+1
| | | | | | | | | | | | utility and quote its arguments. Also checks for the 'socket' library on Solaris. If this patch passes the Daily Tests and makes the user happy, I'll port it back to the 1.6 branch. Tested on mir and sol.
* [svn-r12700] Alert:Quincey Koziol2006-10-024-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
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