| Commit message (Collapse) | Author | Age | Files | Lines |
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back fix for removing rpaths from l
ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux
and solaris machines.
Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
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instead of INCLUDES. Update automake to 1.14.1
h5committest
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Clean up more compiler warnings, plus merge a few Coverity bug fixes from
the hdf5_1_8_coverity branch back to the trunk:
r20877:
Purpose: Fix coverity issue 1723
Description:
Modified test_generate in hl/test_image to close file "f" before exit, even if
an error occurs.
r20879:
Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go
futher if call fails as well as empty.
r20881:
Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether
FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the
condition check in the print statement.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel
(too minor to require h5committest)
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Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
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Tested: local linux, h5committest
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KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.
Tested: local linux
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KitWare recommendations: Change CMake commands to lower case.
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KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
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h5repack requires a check for UD filters that also must check if the filter can be dynamically loaded. This require a change in the library that checks for this.
Tested: locally and reviewed
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to test script changes in autotools test scripts.
Tested: local linux
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Tested: local linux autotools
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CMake only until library updates approved.
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several files are left
behind by "make distclean" (see below); modified appropriate Makefile.am files and ran
bin/reconfigure to create Makefile.in to fix the problem.
Here is the list of the files "make disclean" doesn't remove:
tools/h5dump/testfiles
tools/h5repack/testfiles/h5diff_attr1.h5
tools/h5repack/testfiles/tfamily00000.h5
tools/h5repack/testfiles/tfamily00010.h5
tools/h5repack/testfiles/tfamily00002.h5
tools/h5repack/testfiles/tfamily00004.h5
tools/h5repack/testfiles/tfamily00006.h5
tools/h5repack/testfiles/tfamily00008.h5
tools/h5repack/testfiles/tfamily00001.h5
tools/h5repack/testfiles/tfamily00003.h5
tools/h5repack/testfiles/tfamily00005.h5
tools/h5repack/testfiles/tfamily00007.h5
tools/h5repack/testfiles/tfamily00009.h5
tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav
tools/h5jam/testfiles/h5jam-help.txt.err-sav
tools/h5jam/testfiles/h5unjam-help.txt.err-sav
tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav
tools/h5jam/testfiles/h5jam-help.txt.out-sav
tools/h5jam/testfiles/h5unjam-help.txt.out-sav
hl/fortran/test/dsetf5.h5
c++/test/tattr_multi.h5
c++/test/tattr_scalar.h5
c++/test/tfattrs.h5
c++/test/tattr_basic.h5
c++/test/tattr_compound.h5
c++/test/tattr_dtype.h5
Tested on jam and emu in place and using srcdir with the svn stat command.
This fix doesn't address two problems:
tool/h5dump/testfiles directory is not removed by "make distclean" and it should be
tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
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cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
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Prep work for adding a memory free function, part of HDFFV-8551.
Tested on:
32-bit LE linux (jam)
* with C++, Fortran
* with thread safety on
These are minor changes (almost entirely renaming foo functions
to HDfoo) that don't change functionality. This should not
require a full commit test.
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tested with h5committest
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--disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
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Add more usage info for UserMacros.
Add new option information about the Plugin default path.
Tested: local linux, jam
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for objects in examples.
Tested: local linux
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include test.
Tested: jam
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Tested : local linux
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Reviewed in H5T-61
Tested: local linux - cmake and autotools
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Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff.
Corrected test scripts for test folder path
Tested: h5committest and local linux with CMake
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Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff.
Tested local linux with CMake
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developers.
Tested: local linux
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Clean up a few warnings
Tested on:
Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN
(too minor to require h5committest)
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output and comment.
Jira issue HDFFV-8493.
No test - text only change.
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This adds the UserMacros.cmake support needed.
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HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.
Description:
h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.
The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks.
The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
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Tested: local linux
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Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
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Tested: local linux
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Tested with h5committest on jam, koala and ostrich.
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if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries.
Tested on jam,koala,ostrich(h5committest) and other THG machines.
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HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim
Description:
"h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim.
Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim.
These issue occurred when dataset size is smaller than 64k (compact size limit)
Fixed them.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
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autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
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libtool 2.4.2
Tested THG machines.
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Changes resulting from Klocwork static analysis tool, from Mark Miller
@ LLNL (miller86@llnl.gov).
Tested on:
Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x
(too minor to require h5committest)
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Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree
Description:
This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement."
From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir.
It's addressed by skipping if cp's src dir and dest dir is same.
Also this applied for all other tools under src/tools dir.
No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
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for windows when configured with RelWithDebInfo
Tested: local linux and Windows
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Fix h5repacktst (test file generating binary) to address HDFFV-8016 h5repacktst failed in AIX 32bit mode
Description:
Segmentation fault occurred when h5repacktst try to generate a dataset when
system memory is limited to 256MB.
Add error handling to display apporiate message to exit and adjust the test
dataset according to the original size which didn't causing out of memory.
Tested: test was done by limit memory in csh.
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
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