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* [svn-r17443] Description:Scot Breitenfeld2009-09-026-68/+119
| | | | | | | | Merged changes from the trunk into the branch: svn merge -r17188:17442 https://svn.hdfgroup.uiuc.edu/hdf5/trunk Tested: smirom (icc, gcc)
* [svn-r17094] Merged changes from the trunk into the branch:Scot Breitenfeld2009-06-231-2/+4
| | | | | | svn merge -r17073:17093 https://svn.hdfgroup.uiuc.edu/hdf5/trunk Tested: smirom
* [svn-r17088] Updated to latest trunk revision.Allen Byrne2009-06-183-18/+37
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* [svn-r17074] Merged changes from the trunk into the branch:Scot Breitenfeld2009-06-171-0/+38
| | | | | | svn merge -r17016:17073 https://svn.hdfgroup.uiuc.edu/hdf5/trunk Tested: smirom
* [svn-r16875] Merged changes from the trunk into the branch:Scot Breitenfeld2009-04-2813-2320/+3219
| | | | | | svn merge -r16602:16869 https://svn.hdfgroup.uiuc.edu/hdf5/trunk Tested on: smirom
* [svn-r16561] Purpose:Mike McGreevy2009-03-101-3/+3
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to specify the installation location of C header files, did not work correctly as the path was hard-coded in config/commence.am. I'm presuming this is because an older version of automake didn't know where to put c header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag to allow customization of this value. Tested: jam, liberty
* [svn-r16560] Description:Quincey Koziol2009-03-101-0/+8
| | | | | | | | | | Remove another call to H5E_clear_stack() from within the library. Clean up lots of compiler warnings. Tested on: Mac OS X/32 10.5.6 (amazon) (followup on other platforms forthcoming)
* [svn-r16518] have 2 expected outputs for 2 h5ls runs depending if run on a ↵Pedro Vicente Nunes2009-02-261-0/+1
| | | | | | | big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: h5committest
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-181-1/+1
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r16401] Description:Quincey Koziol2009-02-032-0/+5
| | | | | | | | | Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16301] Add a mention to the usage that the default minimum size for ↵Pedro Vicente Nunes2009-01-131-1/+1
| | | | | | | | | | compression is 1024 bytes M - is an integer greater than 1, size of dataset in bytes (default is 1024) #bgz 1426 tested: windows, linux
* [svn-r16114] remove commented codePedro Vicente Nunes2008-11-211-13/+0
| | | | tested: windows, linux
* [svn-r16112] #1375. Define a default chunk whose size is manageable. Defined ↵Pedro Vicente Nunes2008-11-213-13/+55
| | | | | | currently as the same size of hyperslab (that compares the dimension sizes against a predefined constant size and chooses the minimum between the two) Tested : linux, windows
* [svn-r15993] Pedro Vicente Nunes2008-10-291-186/+45
| | | | | | Merge with 1.8 rev 15985 reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code Tested: linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-292-5/+2
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-241-6/+6
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15792] Bug fix. When detecting the user requested filters, the "all" ↵Pedro Vicente Nunes2008-10-062-39/+67
| | | | | | option was not taken in consideration when printing the compression ratio Tested: windows, linux
* [svn-r15721] Added a file with user block data to be used by the h5repack ↵Pedro Vicente Nunes2008-09-291-0/+1
| | | | windows shell script only Note: for the unix shell script this file is not used
* [svn-r15678] formatted codePedro Vicente Nunes2008-09-221-4/+8
| | | | tested: windows, linux
* [svn-r15664] fix comments Pedro Vicente Nunes2008-09-191-8/+15
| | | | tested: linux
* [svn-r15653] cleaned warningsPedro Vicente Nunes2008-09-183-74/+22
| | | | tested: windows, linux
* [svn-r15652] Cleaned compiler warnings Pedro Vicente Nunes2008-09-183-26/+64
| | | | | | Bug fix: do not print print compression ratio when the requested filter is NONE Tested: windows, linux
* [svn-r15650] Cleaned compiler warnings Pedro Vicente Nunes2008-09-181-4/+4
| | | | | | Bug fix: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call Tested: windows, linux
* [svn-r15643] add a failure condition of writing user blockPedro Vicente Nunes2008-09-171-161/+178
| | | | Tested: windows, linux
* [svn-r15636] formatted codePedro Vicente Nunes2008-09-161-3790/+3850
| | | | tested: windows, linux
* [svn-r15635] add info regarding user block to usagePedro Vicente Nunes2008-09-161-1/+2
| | | | tested: windows, linux
* [svn-r15634] Add a default user block size of 1024 when none is givenPedro Vicente Nunes2008-09-162-5/+11
| | | | Tested: windows, linux
* [svn-r15628] Description:Quincey Koziol2008-09-1610-574/+574
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15557] bug fix: the -m flag add a long description of "--threshold" ↵Pedro Vicente Nunes2008-08-291-1/+1
| | | | | | that was changed to "--minimum" because "--threshold" now refers to the threshold parameter for H5Pset_alignment tested: linux
* [svn-r15556] Check options for H5Pset_alignment.Pedro Vicente Nunes2008-08-291-9/+2
| | | | | | threshold is zero default (a valid value) but zero is not a valid alignment tested: windows, linux
* [svn-r15551] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-287-23/+192
| | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15547] fix typosPedro Vicente Nunes2008-08-272-2/+2
| | | | tested: linux
* [svn-r15527] turn off a debug print flagPedro Vicente Nunes2008-08-251-1/+1
| | | | tested: windows, linux
* [svn-r15526] userblock optionsPedro Vicente Nunes2008-08-253-8/+9
| | | | | | only write the user block of a pre-existing file with user block in case there is no input user block file tested: windows, linux
* [svn-r15521] #1184Pedro Vicente Nunes2008-08-226-16/+310
| | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15462] Description:Quincey Koziol2008-08-121-0/+1
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15458] Purpose: Modify the library to take the proper action when ↵inactive/jpeg_converterNeil Fortner2008-08-112-0/+0
| | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15432] bug fixPedro Vicente Nunes2008-08-051-6/+8
| | | | | | the compression ratio was being printed for cases where a layout was requested and not a filter tested: windows, linux
* [svn-r15431] added the h5diff "contents" mode to the h5diff calls in the ↵Pedro Vicente Nunes2008-08-051-0/+3
| | | | | | h5repack test tested: windows, linux
* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-041-2/+2
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r15421] bug fixPedro Vicente Nunes2008-07-281-5/+5
| | | | | | | the parsing of the command line strings for the shared object header message type was not being done correctly (strcmp) fix: substituted by strncmp tested: windows, linux
* [svn-r15247] Moved all h5repack testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-2017-6/+7
| | | | | | tools/h5repack/testfiles tested: linux
* [svn-r15052] Add a test for the 1.6.7 -i infile -o outifle for backward ↵Pedro Vicente Nunes2008-05-211-0/+37
| | | | | | | | compability Used the function TOOLTEST from 1.6.7 Tested: linux
* [svn-r15047] bug fix regarding change from -i to -d regarding number of ↵Pedro Vicente Nunes2008-05-201-1/+1
| | | | | | links in indexed format tested: windows
* [svn-r15044] backward compatibility for old -i infile -o outfile optionsPedro Vicente Nunes2008-05-202-18/+195
| | | | | | | | | | | | | | | | | if these are detected this syntax is used, otherwise the one in usage is used there was another -i option for -i L2, --indexed=L2 Minimum number of links in the indexed format That was changed to -d -d L2, --indexed=L2 Minimum number of links in the indexed format Tested: windows, linux
* [svn-r15036] Bug fix.Albert Cheng2008-05-191-4/+4
| | | | | | | | | | | | | | | | | | | Description: The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the Fortran API source so that conclude.am will give fortran api prefix in the test output. The symbox HDF_FORTRAN is also used in configure for a different purpose (indicated --enable-fortran). They conflicted. Similar problem for the symbol HDF_CXX. Solution: Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is a more appropriate name. Same for CXX_API. Along the way, discovered that the Makefile.am of hl/fortran/test and hl/cxx/test did not have those symbols at all. Added them in. Platform tested: Kagiso only. It is a trivia change.
* [svn-r15007] Purpose: configure cleanupMike McGreevy2008-05-151-1/+0
| | | | | | | Description: cleaning up configure related to removal of --disable-hsizet flag, which we no longer support. Tested: kagiso
* [svn-r15003] Purpose:Albert Cheng2008-05-151-0/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Improvement. Description: src/libhdf5.settings was the initial configure summary and is installed. Then configure is changed to dump a summary of the configure settings to the output and also append it to src/libhdf5.settings. That created two different output formats and duplicated information. This is the initial attempt to clean up this confusion and unify the output format. It is decided to use the src/libhdf5.settings template as the unified means. This requires more macros symbols be defined. The following symbols are all related to generating the src/libhdf5.settings file. AC_SUBST(EXTERNAL_FILTERS) AC_SUBST(MPE) MPE=no AC_SUBST(STATIC_EXEC) STATIC_EXEC=no AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no AC_SUBST(FC) HDF_FORTRAN=no AC_SUBST(HDF_CXX) HDF_CXX=no AC_SUBST(CXX) HDF_CXX=no AC_SUBST(HDF5_HL) HDF5_HL=yes AC_SUBST(GPFS) GPFS=no AC_SUBST(LINUX_LFS) LINUX_LFS=no AC_SUBST(INSTRUMENT) INSTRUMENT=no AC_SUBST(CODESTACK) CODESTACK=no AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no AC_SUBST(DIRECT_VFD) DIRECT_VFD=no AC_SUBST(THREADSAFE) THREADSAFE=no AC_SUBST(STATIC_SHARED) AC_SUBST(enable_shared) AC_SUBST(enable_static) AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a` The src/libhdf5.settings.in has CONDITIONAL's added to it too. The untrue conditions turned into a "#" and these lines are cleaned by the post processing script. Platform tested: h5committest on kagiso, smirom and linew.
* [svn-r14933] Purpose: Updating HDF5 to use automake 1.10.1 and libtool 2.2.2Mike McGreevy2008-05-051-16/+20
| | | | | | | | | | | | | | | | | | Description: Applying update to autotools that was applied to 1.8 a couple of weeks ago to the trunk. Updated bin/reconfigure script to reflect the new versions of libtool and automake in the /home1/packages/ directory. Rearranged configure.in script. When using libtool 2.2.2, the libtool script doesn't generate until later in the configuration process, so I had to move a test that parsed through the libtool script to a point after where it was actually being generated. Ran libtoolize on the project, and ran bin/reconfigure to regenerate configure and Makefile.in's throughout. Tested: kagiso, smirom, linew (h5committest)
* [svn-r14913] Introduced a compression ratio = uncompressed size / ↵Pedro Vicente Nunes2008-05-011-13/+15
| | | | | | | | compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux
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