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* [svn-r22479] Remove subfolder tools from install commandAllen Byrne2012-06-201-2/+2
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* [svn-r22405] HDFFV-8018: add INSTALL commands for packaging the pdb files ↵Allen Byrne2012-05-241-0/+3
| | | | | | for windows when configured with RelWithDebInfo Tested: local linux and Windows
* [svn-r22373] Purpose: Jonathan Kim2012-05-161-5/+10
| | | | | | | | | | | | | Fix h5repacktst (test file generating binary) to address HDFFV-8016 h5repacktst failed in AIX 32bit mode Description: Segmentation fault occurred when h5repacktst try to generate a dataset when system memory is limited to 256MB. Add error handling to display apporiate message to exit and adjust the test dataset according to the original size which didn't causing out of memory. Tested: test was done by limit memory in csh. jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22277] Purpose:Jonathan Kim2012-04-119-23/+232
| | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22247] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-7/+63
| | | | Tested: local linux
* [svn-r22240] Description:Quincey Koziol2012-04-021-2/+2
| | | | Update comment about metadata block size test.
* [svn-r22238] Added comment to explain why FNAME4 is used and cautioned other ↵Albert Cheng2012-04-021-0/+2
| | | | | | files may not work.
* [svn-r22224] Description:Quincey Koziol2012-04-012-14/+19
| | | | | | | | | Clean up a few warnings and use constant values for free-space parameters for the metadata block size test. Tested on: Linux/64 2.6.18 (koala) w/production & szip (h5committested also)
* [svn-r22221] Description:Quincey Koziol2012-04-011-4/+4
| | | | | | | | Small code cleanup while tracking down h5repack issue. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22220] Feature: HDFFV-7981Albert Cheng2012-03-311-0/+20
| | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
* [svn-r22214] Feature: HDFFV-7981Albert Cheng2012-03-301-6/+54
| | | | | | Added test to verify h5repack --metadata option produces bigger size file. Tested: h5committest (koala, jam, ostrich).
* [svn-r22181] Description:Quincey Koziol2012-03-291-2/+2
| | | | | | | Correct typo in test file name. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22180] Description:Quincey Koziol2012-03-296-120/+110
| | | | | | | | | Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-281-0/+0
| | | | non-executable files.
* [svn-r22024] Add HD prefix to tools library based tests. Cleaned ↵Allen Byrne2012-03-051-15/+15
| | | | | | allocation/free in tests. Tested: local linux/ changes h5committetest against 1.8 version
* [svn-r22012] Purpose:Jonathan Kim2012-03-011-57/+269
| | | | | | | | | | | | | | | | Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack Description: h5repack sometimes became very slow when handling big chunked datasets in certain cases. (when chunk boundary doesn't match with a hyperslab boundary.) The main issue was from figuring out a hypeslab without considering chunk boundary to read from and write to such datasets. The update was made to figure out a better hyperslab unit with considering chunk boundary to improve performance for such cases prior to the update. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
* [svn-r22005] function calls must be after assignments on windowsAllen Byrne2012-02-291-5/+6
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* [svn-r22004] Reduced warnings and fixed conflicts resulting from including ↵Allen Byrne2012-02-287-143/+148
| | | | | | h5tools.h Tested: local linux
* [svn-r21994] Add tools_init to mainAllen Byrne2012-02-271-0/+5
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* [svn-r21993] Add tools_init to mainAllen Byrne2012-02-271-0/+3
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* [svn-r21985] Tools must call h5tools_init before command_line parsing or ↵Allen Byrne2012-02-241-0/+3
| | | | | | | | using tools_mesg functions. Tools library uses alais variables for stdout, stderr and tools library uses HDfprintf() functions. Tested: local linux
* [svn-r21982] Correct HD prefix in tools for exitAllen Byrne2012-02-244-41/+41
| | | | Checked for HD support.
* [svn-r21980] Correct HD prefix in tools for *allocAllen Byrne2012-02-242-5/+5
| | | | Checked for HD support.
* [svn-r21979] Correct HD prefix in tools for strlen and memcpyAllen Byrne2012-02-241-2/+2
| | | | Checked for HD support.
* [svn-r21974] Update HSIZE_T print statements to use correct macro.Allen Byrne2012-02-237-259/+259
| | | | | | Fix some more HD prefix issues in tools. Tested: local linux
* [svn-r21902] Description:Jonathan Kim2012-01-301-3/+4
| | | | update a comment from buzilla# (1797) to jira# (2605). Also prevent conflict from merging source.
* [svn-r21897] Purpose:Jonathan Kim2012-01-261-63/+66
| | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5repack cmake test. Description: Update cmake script to clean up correctly. Revisit h5repack cmake test script updated from r21869. Tested: cmake test for Windows (32-LE) and jam (linux32-LE)
* [svn-r21872] Update a comment to make clear from the previous commit ↵Jonathan Kim2012-01-111-2/+3
| | | | (r21869) for HDFFV-7840.
* [svn-r21869] Purpose:Jonathan Kim2012-01-094-57/+86
| | | | | | | | | | | | | | Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
* [svn-r21804] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-051-1/+1
| | | | standard 2.8.6
* [svn-r21667] Update FOLDER solution option for target properties. Added ↵Allen Byrne2011-10-251-4/+3
| | | | | | OPTION command for solution folder and no packaging. Tested: local linux
* [svn-r21664] Added solution folders for most of the projects. This still ↵Dana Robinson2011-10-251-0/+4
| | | | | | needs some polish - the solution folder assignment should go closer to the target declaration and not all projects are grouped (parallel, c++, fortran, hl, and a few others). Tested on Windows.
* [svn-r21586] Description:Jonathan Kim2011-10-143-0/+6
| | | | | | | | | Added a funtion to reset dataset & hyperslab buffer size for h5repack from an environment variable. This is performance debugging purpose for now. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE), cmake
* [svn-r21489] Bug:Albert Cheng2011-10-071-4/+4
| | | | | | | | | | | h5dump was used in test script but was not invoked by RUNSERIAL. THis does not work in batch machines like Blue Gene in LLNL. Solution: Added $RUNSERIAL to invoke $H5DUMP_BIN. Tested: LLNL BlueGene (udawn)
* [svn-r21389] Test case added for HDFFV-5932 - h5repack breaks files with ↵Jonathan Kim2011-09-141-4/+2
| | | | | | | dimension scales. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r21386] Fixed a void pointer (need to cast it to char*) because it ↵Peter Cao2011-09-141-4/+4
| | | | causes problem on Windows.
* [svn-r21382] Update values of references(object and region) of attributes in ↵Peter Cao2011-09-142-160/+324
| | | | h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references.
* [svn-r21297] Move all tests into DEPENDS structure so that clear-all-objects ↵Allen Byrne2011-08-231-311/+318
| | | | | | is first. Also preface all tests with H5REPACK.
* [svn-r21283] H5Eget_major() is depreciated. use the H5Eget_msg() instead.Peter Cao2011-08-221-6/+3
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* [svn-r21265] h5repack: added macro to handle failure in H5Dread/write when ↵Peter Cao2011-08-191-11/+37
| | | | memory allocation failed inside the library
* [svn-r21249] Description: Part II of F2003 branch merge into the trunk.Scot Breitenfeld2011-08-181-0/+3
| | | | | | Ran bin/reconfigure to update the Makefile.in in directories not part of the fortran directory check=in. Updates Makefile.in due to changes made in configure.in for the Fortran 2003 additions. Tested on all platforms run under daily tests.
* [svn-r21125] Description:Quincey Koziol2011-07-191-31/+31
| | | | | | | | | | | | Correct char arrays that were too small for strings defined. Also, change cleanup to work correctly. Tested on: Mac OS X/32 10.6.8 (amazon) w/debug FreeBSD/32 8.2 (loyalty) w/debug FreeBSD/64 8.2 (freedom) w/debug Linux/64 2.6 (heiwa) w/debug Linux/64 2.6 (ember) w/parallel
* [svn-r21121] Description:Quincey Koziol2011-07-181-4/+4
| | | | | | | | | Switch from H5P_DATASET_ACCESS_DEFAULT to H5P_DEFAULT for calls to H5Rdereference2(). Tested on: Mac OS X/32 10.6.8 (amazon) w/debug (too minor to require h5committest)
* [svn-r21117] Issue 2763 - I added a new parameter of object access property ↵Raymond Lu2011-07-181-4/+4
| | | | | | list to the function H5Rdereference. It's called H5Rdereference2 now. H5Rdereference function has been deprecated to H5Rdereference1. I also added some test cases in trefer.c. Tested on jam, heiwa, and koala.
* [svn-r21105] Fixed two bugs:Peter Cao2011-07-152-0/+5
| | | | | | | - h5repack: h5repack failed to copy dataset if the layout is changed from chunked with unlimited dims to contiguous. (PC -- 2011/07/15) - h5diff: "--delta" option considers two NaN of the same type are different, which is wrong based on http://www.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Diff. (PC -- 2011/07/15)
* [svn-r21057] [hdf5 Trunk ] TODOJonathan Kim2011-06-301-134/+200
| | | | | | | | | | | Purpose: Work for HDFFV-7602 - HDF5 command tools: Provide framework for reusable test files among tools Description: Provide framework to share test files among tools for tools test. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20504] Purpose:Mike McGreevy2011-04-141-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | General shared library improvements for CYGWIN / AIX Description: Shared libraries are disabled on both CYGWIN and AIX due to inability to build them correctly. Part of the problem in both of these situations is the lack of the libtool flag -no-undefined, which tells libtool that all needed symbols are defined at link time (a requirement on these systems) and that it's okay to build shared libraries. Another problem are lack of dependencies between wrapper libraries and core C HDF5 library. This patch addresses both of these by fixing configure to add in -no-undefined flag for libtool during linking and adds automake dependencies in the Makefile.am files. After testing, both CYGWIN and AIX now generate shared libraries, but there are still some test failures in each. (cache_api, dt_arith, and testerror.sh on CYGWIN, and fortran tests on AIX). Even though the shared libraries are not quite perfect, this is a general improvement to what we had before, so I'm applying the patch anyways. Note that default behavior of shared libraries on these systems being disabled has NOT been changed and requires the use of the --enable-unsupported to attempt to build them. We will need to address the test failures in each architecture prior to formally supporting shared libraries on each. Tested: h5committested & CYGWIN tested (on bangan) (AIX tested by Albert on bp-login2)
* [svn-r20502] Purpose:Mike McGreevy2011-04-141-18/+38
| | | | | | | | | | | | | | | | | | | | | | | | Add "silent make" mode configure option. Description: Automake 1.11 has a new option available that allows for a silent make mode. This functionality needs to be explicitly enabled in configure.in via the use of the automake macro AM_SILENT_RULES, which is what this commit is adding. This introduces a new configure option: --{en|dis}able-silent-rules This option is on by default, and simplies compile and link line outputs when building the library. Disabling this option will print full "verbose" output (i.e., full compile and linking lines for each target). Tested: This was tested on jam & h5committested
* [svn-r20475] Purpose:Mike McGreevy2011-04-111-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Revise shared Fortran library disabling scenarios in configure - Improve configure output summary Description: Shared Fortran libraries are not supported on Mac, but were being disabled by configure in a way that also forced the C libraries to be static-only. This has been fixed, so now only shared Fortran is disabled while shared C can remain. This prompted two additional changes: 1. While working on the check that addresses whether or not shared Fortran libraries are allowed, removed old and no longer needed check(s) that disable shared Fortran libraries with HP, Intel 8, PGI, and Absoft compilers. (Essentially, Mac is the only situation in which Fortran shared are disabled by configure.) 2. Having two different states of libraries (i.e. shared C library with static-only Fortran library) was not apparent in the configure summary, which labeled all libraries as either shared and/or static. I've added lines to both the C++ and Fortran output sections to list shared/static-ness of these libraries specifically. Additionally, I've made sure that the new --enable-unsupported configure option correctly overrides configure if it tries to disable a shared library. Tested: jam, fred, & h5committest
* [svn-r20249] Add test properties to H5LS for expected failAllen Byrne2011-03-151-12/+18
| | | | Add SKIPPED to test name if test skipped, also do not run skipped tests if doing memcheck
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