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* [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-272-9/+0
| | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-251-2/+2
| | | | make clean.
* [svn-r26208] Update cmake minimumsAllen Byrne2015-02-181-1/+1
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* [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-161-1/+2
| | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-1/+0
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r25570] UNDO:Added option to build tools static when building shared ↵Allen Byrne2014-09-031-7/+2
| | | | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Windows DLL linkage problem because of defines needed. Tested: local linux
* [svn-r25569] Added option to build tools static when building shared ↵Allen Byrne2014-09-031-2/+7
| | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Tested: local linux
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-071-1/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-1/+1
| | | | Tested: local linux
* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-251-3/+3
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* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-77/+440
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-112-9/+9
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-37/+37
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24646] HDFFV-8640: Remove xlate_utility by fixing reference files to ↵Allen Byrne2014-01-2733-98/+2
| | | | | | not add extra lines. Tested: cmake and autotools local linux
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+17
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-311-4/+4
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-255/+258
| | | | | | developers. Tested: local linux
* [svn-r24023] Added tests to CMakeLists.txt that were only added to the *nix ↵Allen Byrne2013-08-191-0/+91
| | | | | | script. Tested: local linux
* [svn-r24015] A bug fix when merging changes from the trunk to 1.8 for h5stat ↵Vailin Choi2013-08-161-15/+24
| | | | | | | bug fix HDFFV-1238: Fix a problem when using opt_arg that is NULL for the new options added: -l N, -m N, -a N. h5committested.
* [svn-r23976] The following files were missing from previous checkin rev ↵Vailin Choi2013-08-0817-0/+440
| | | | | | #23975 for bug HDFFV-1238. h5committested.
* [svn-r23975] This checkin contains--Vailin Choi2013-08-0813-124/+535
| | | | | | | | | A) Fix for HDFFV-1238: --Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c) --Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c) --Add tests for the new options (tools/h5stat/testh5stat.sh.in) --Update expected output files (tools/h5stat/testfiles/*.ddl) B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c)
* [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+2
| | | | This adds the UserMacros.cmake support needed.
* [svn-r23695] Description:Quincey Koziol2013-05-111-161/+176
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!) Merge changes from Coverity branch back to trunk: r20684: Fix for coverity bug #1721 which was due to the fix for coverity bug #943. r20685: Use HDstrncpy. --gh r20761: Purpose: Fix valgrind issues Description: Free image_data and data as appropriate in test_image. r20762: Purpose: Fix coverity issue 600 Description: Add check for return value of H5O_close in H5Ocopy. Also cleaned up various warnings. r20763: Purpose: Fix valgrind issues with h5stat Description: Modified h5stat to free "iter" before exit, and free "hand" before exit if parse_command_line exits directly. r20764: fixed coverity issues: 69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80 r20765: Fixed coverity bug 668 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1. I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program. r20766: Fixed coverity bug 667 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (h5committest upcoming)
* [svn-r23305] HDFFV-8257: szip still used even if headers are not found. ↵Allen Byrne2013-02-181-1/+1
| | | | | | Change configure to test the result of the CHECK HEADERS call before checking for the library. Tested: local linux, h5committest
* [svn-r23278] HDFFV-8311: Correct test dependencyAllen Byrne2013-02-141-3/+2
| | | | Tested: local linux
* [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10Allen Byrne2013-01-141-1/+1
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* [svn-r23055] Bug fix: HDFFV-8233Albert Cheng2012-11-261-2/+12
| | | | | | | | | | | | | testh5stat.sh fails in LLNL uDawn. The test actually ran as expected but it did not prepare for the extra error messages from the MPI process. Solution: This sort of problem has been fixed by using the output filters in output_filter.sh. testh5stat.sh is updated to use the output filters. Tested: uDawn.
* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-161-2/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-271-0/+2
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22720] Fix RelWithDebInfo packagingAllen Byrne2012-08-281-1/+1
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* [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of ↵Allen Byrne2012-08-232-20/+18
| | | | | | autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. Tested: h5committest
* [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, ↵Larry Knox2012-08-221-42/+103
| | | | | | libtool 2.4.2 Tested THG machines.
* [svn-r22617] Purpose:Jonathan Kim2012-08-011-6/+17
| | | | | | | | | | | | | | | Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22479] Remove subfolder tools from install commandAllen Byrne2012-06-201-2/+2
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* [svn-r22453] Add missing property for resultcode of 1 to MEMCHECKER testsAllen Byrne2012-06-121-0/+3
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* [svn-r22445] Add new test to CMake fileAllen Byrne2012-06-071-0/+6
| | | | Tested: local linux
* [svn-r22444] (1) fix for making MEM_GHEAP as MEM_DRAWVailin Choi2012-06-073-32/+15
| | | | | | | (2) fix to extend into the aggregator based on threshold (3) fix for the "flavor" logging problem (4) fix for test failures due to the above fixes (5) bug fix for h5stat when h5stat against a non-existing file
* [svn-r22405] HDFFV-8018: add INSTALL commands for packaging the pdb files ↵Allen Byrne2012-05-241-0/+3
| | | | | | for windows when configured with RelWithDebInfo Tested: local linux and Windows
* [svn-r22169] Description:Quincey Koziol2012-03-281-144/+137
| | | | | | | | Clean up formatting and whitespace. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r22033] Remove unnecessary INCLUDE_DIR commandAllen Byrne2012-03-071-1/+0
| | | | Tested: local linux and windows
* [svn-r21991] Cleanup minor issues found during 518 mergeAllen Byrne2012-02-271-2/+2
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* [svn-r21987] Remove unnecessary dependancies on tools library for h5 file ↵Allen Byrne2012-02-271-1/+1
| | | | | | gentests. Tested: local linux
* [svn-r21985] Tools must call h5tools_init before command_line parsing or ↵Allen Byrne2012-02-241-0/+1
| | | | | | | | using tools_mesg functions. Tools library uses alais variables for stdout, stderr and tools library uses HDfprintf() functions. Tested: local linux
* [svn-r21984] Correct HD prefix in toolsAllen Byrne2012-02-241-1/+1
| | | | Checked for HD support.
* [svn-r21982] Correct HD prefix in tools for exitAllen Byrne2012-02-241-1/+1
| | | | Checked for HD support.
* [svn-r21981] Correct HD prefix in tools for fprintfAllen Byrne2012-02-241-15/+15
| | | | Checked for HD support.
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