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* [svn-r18873] Purpose:Jonathan Kim2010-05-211-2/+2
| | | | | | | | | | | Rename '--follow-links' to '--follow-symlinks' Description: The '--follow-links' option is to follow symbolic links (soft and external). Make the name more intuitive and specific to the feature. Tested: jam, amani and linew
* [svn-r18614] Purpose:Jonathan Kim2010-04-221-145/+0
| | | | | | | | Fix for bug 1817 : h5copy fail to copy dangling link by specifying link path directly Tested: jam, amani, linew
* [svn-r18273] Purpose:Jonathan Kim2010-02-181-6/+64
| | | | | | | | | | | | | | | | | | bugzilla 1754: h5diff: support comparing through links. Description: Fix incorrect (or hanging) behavior in parallel mode when specifying invalid combination of command options. (ex: -v and -q , --no-dangling-links without --follow-links) Add relate test case Update h5diffgentest.c due to add test files this and previous time Note: svn #18266 (prior to this) svn #18164 (original check-in) Tested: h5committest (jam, amani and linew)
* [svn-r18266] Purpose:Jonathan Kim2010-02-161-525/+480
| | | | | | | | | | | | | | | bugzilla 1754: h5diff: support comparing through links. (original check-in svn revision #18164) Description: fix the hang issue in parallel mode when compare external-link. add --no-dangling-links option. add test cases (#450-#459) relate to the new option. improve test script to check exit code. update --help relate to the new options. correct some indentations. Tested: h5committest (jam, amani and linew)
* [svn-r18197] Description:Quincey Koziol2010-01-301-48/+48
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r18166] Purpose:Jonathan Kim2010-01-261-2/+1
| | | | | | | | | | | Take care of test case fail for h5repack from checkin (r18164) Description: Previous checkin didn't allow h5diff to return succeed when a link's target object doesn't exist. Changed it to succeed with warning. (Need to discuss related feature) Tested on Jam
* [svn-r18164] Purpose:Jonathan Kim2010-01-251-39/+586
| | | | | | | | | | | | | | | Add a feature to compare through links. Relate to bugzilla report 1754. Description: Currently, h5diff command only compares the name(path) of target object not the actual data. With this feature, h5diff will go through the link(s) and figure out the actual object at the end of the link and compare data if exist. Internally we have hard-link, soft-link, external-link (as part of user_defined-link). This feature will provide a user transparent experience when comparing link objects as the user can specify any of those 3 type of links to be compared in any combination. Tested on Jam.
* [svn-r18134] Purpose:Jonathan Kim2010-01-211-3/+5
| | | | | | | | | | | | Additional fix relted to the fix of bug1672. Description: The fix of bug1672 caused some changes of output which required modifying some test cases. After some discussion, restoring the changes of the test cases was decided. After many experiments for the solution, this fix was made so the code which improved performance can stay. Tested on Jam.
* [svn-r18126] Fix for bug1749: Incorrect code in diff() function for links ↵Jonathan Kim2010-01-201-12/+2
| | | | compare
* [svn-r17905] Purpose:Jonathan Kim2009-11-201-34/+16
| | | | | | | | | | | | | | | | Fix Bug1672 - Display garbage value on LE machine for BE data. Description: Casuing by calling diff_dataset twice when -r or no option was given. Change to call it once which fix the problem. It also improves the performance. (diffing time in half) According further test, it also occurred on BE machine as well and it seems occruing only with the BE data attached to Bugzilla. Don't know how the file was created. Anyway this fix will prevent from diffing with garbage values in similiar potential case. Tested on: linux32 (jam) , linux64 (almani), solaris (linew)
* [svn-r17052] Add a run to the h5repack shell script to read a family filePedro Vicente Nunes2009-06-151-3/+12
| | | | | | | | The file used for input is located in the common source tools for testfiles, in tools/testfiles Modified the h5repack shell script to read files from this location (h5repack reads its input files from a dedicated testfiles location in h5repack/testfiles) Changed the h5diff open file call to use h5tools_fopen, so that it can open all file drivers Tested: windows, linux, solaris
* [svn-r16373] replaced some printf statements with parallel_printPedro Vicente Nunes2009-01-291-10/+10
| | | | tested: linux serial and parallel
* [svn-r16348] #1368 (E1) h5diff: implement "not comparable" messages. ↵Pedro Vicente Nunes2009-01-261-2/+4
| | | | | | | | Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16030] updated some comments regarding a function change regarding ↵Pedro Vicente Nunes2008-11-041-9/+6
| | | | | | | | | | h5diff return value (not done for 1.8) * Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008 * Compare the graph and make h5diff return 1 for difference if * 1) the number of objects in file1 is not the same as in file2 * 2) the graph does not match, i.e same names (absolute path) * 3) objects with the same name are not of the same type
* [svn-r15990] Merge with 1.8 rev 15967Pedro Vicente Nunes2008-10-291-4/+18
| | | | | | regarding the return value of h5diff (0, no difference in files, 1 difference ) objects with the same name must be of the same type tested: linux
* [svn-r15988] Merge with 1.8 up to rev 15871Pedro Vicente Nunes2008-10-291-4/+1
| | | | | | Regarding h5diff, h5copy Tested: linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-291-17/+15
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15628] Description:Quincey Koziol2008-09-161-119/+119
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15445] added some commentsPedro Vicente Nunes2008-08-071-1/+9
| | | | tested: windows, linux
* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-041-36/+101
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-92/+125
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-125/+92
| | | | New fortran wrappers added.
* [svn-r14728] make 1.8 and 1.6 code look equal or similarPedro Vicente Nunes2008-03-121-92/+125
| | | | Tested: windows, linux
* [svn-r14381] comment typo fixPedro Vicente Nunes2008-01-071-1/+1
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* [svn-r14160] Description:Quincey Koziol2007-09-271-2/+2
| | | | | | | | | | | | | | | | Make H5Topen versioned, and add regression test for H5Topen1. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14154] Description:Quincey Koziol2007-09-251-10/+9
| | | | | | | | | | | | | | | | | | | | Finish deprecating last H5G symbol (H5G_obj_t) - yay! Lots of misc. library fixes to remove confusion between links and objects. The tools could still use another pass, to remove h5trav_type_t type and make the correct distinction between links & objects. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14144] Description:Quincey Koziol2007-09-131-659/+554
| | | | | | | | | | | | | | | | Move H5Gget_objinfo() to deprecated symbols section and retarget internal usage to H5Lget_info()/H5Oget_info(). Misc. other code cleanups... Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14136] Description:Quincey Koziol2007-09-061-178/+138
| | | | | | | | | | | | | | Move H5Gget_num_objs() and several minor macros, etc. to deprecated symbols section, replacing it with H5Gget_info(). Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14132] Description:Quincey Koziol2007-08-301-1/+1
| | | | | | | | | | Regenerate the h5diff_types.h5 file, which had somehow gotten mangled in some earlier checkin (prior to ~2-3 days ago, at least). Clean up formatting a bit also.. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14127] Description:Quincey Koziol2007-08-291-12/+12
| | | | | | | | | | | | | Move H5Gget_linkval to deprecated symbol section and replace with H5Lget_val for internal calls. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14115] Description:Quincey Koziol2007-08-281-11/+12
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13648] Description:Quincey Koziol2007-04-121-1/+2
| | | | | | | | | | Rename new error handling API routines from H5E<foo>_stack() to H5E<foo>2(). Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13451] Pedro Vicente Nunes2007-03-051-286/+285
| | | | | | | h5diff bug fix, attributes differences were not being count for total differences Revision of H5Ocopy call in h5repack
* [svn-r13368] Pedro Vicente Nunes2007-02-211-6/+5
| | | | Added a little format alignment to the printing of dimensions
* [svn-r13334] Added a new function to print the dimensions sizesPedro Vicente Nunes2007-02-191-16/+32
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* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12932] Description:Quincey Koziol2006-11-171-9/+9
| | | | | | | | | | | | Basic support for H5Literate() routine. Still needs to be fleshed out and refactored to simplify. Also, needs tests. :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12928] code revisionPedro Vicente Nunes2006-11-161-1/+1
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* [svn-r12895] Description:Quincey Koziol2006-11-131-4/+4
| | | | | | | | | | | | | Add new H5Lget_val_by_idx() routine & tests. Also includes most of changes for H5Ldelete_by_idx() routine. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12864] Description:Quincey Koziol2006-11-061-4/+4
| | | | | | | | Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last Friday afternoon. Tested on: Linux/32 2.6 (chicago)
* [svn-r12835] Description:Quincey Koziol2006-10-311-5/+5
| | | | | | | | | Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API changes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12687] reverted back some changes that inadvertedely added some ↵Pedro Vicente Nunes2006-09-261-2/+2
| | | | | | | | output to the parallel part of h5diff tested : heping parallel
* [svn-r12678] bug fixPedro Vicente Nunes2006-09-251-2/+2
| | | | | the number of atribute differences was not added to the total sum of differences
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-0/+85
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-132/+132
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12254] Purpose:Quincey Koziol2006-04-141-4/+4
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12134] Purpose:Pedro Vicente Nunes2006-03-221-805/+805
| | | | | | | | | | | | | | | | | | bug fix Description: 1) added a more explainative usage message 2) the percent relative error for the integer type (division) was being done using integer arythmetic; use floating point arythmetic instead 3) added a new test for integer percent Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12092] Purpose:Pedro Vicente Nunes2006-03-151-1/+5
| | | | | | | | | | | | | | | | bug fix, new features Description: when comparing links , the output for the number of differences found was not being done Solution: print it add 3 more tests that test the output of differences for 1) groups 2) datatypes 3) links Platforms tested: linux Misc. update:
* [svn-r11886] Purpose:Quincey Koziol2006-01-231-54/+33
| | | | | | | | | | | | | Code cleanup Description: Check in some of the code cleanups from working on the external link support. (This doesn't include any of the external link features) Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX.4 (amazon) Linux 2.4
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