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* HDFFV-10297 add h5copy test and fix h5diff errorsAllen Byrne2017-10-161-11/+11
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-131-1/+1
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r23395] Description:Quincey Koziol2013-03-201-205/+0
| | | | | | | | | | | | Bring Coverity changes from branch to trunk: r20682: fixed coverity: 76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343 Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* [svn-r22684] Purpose: Jonathan Kim2012-08-151-0/+5
| | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22625] HDFFV-8111: h5diff compare file to itself - removed path shortcutAllen Byrne2012-08-031-9/+17
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* [svn-r22176] Purpose:Jonathan Kim2012-03-281-1/+1
| | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21195] Correct windows exports for h5diff.Allen Byrne2011-08-081-7/+7
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* [svn-r20767] Purpose:Jonathan Kim2011-05-061-1/+11
| | | | | | | | | | | | HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Improved performance by eliminating duplicated action for getting object information in half from the previous fixe when comparing group vs group. This is addition to the previous commit r20676. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20294] Purpose:Jonathan Kim2011-03-221-1/+3
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. This fix covers all other cases. Also didn't display useful information about attribute difference. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19757] Purpose:Jonathan Kim2010-11-111-1/+14
| | | | | | | | | | | | | | | | Improve h5diff performance. Description: The following changes for improving h5diff performance: 1) use HDmemcmp() before comparing each elements (memcmp() is very fast at both linew and jam) 2) replace the expensive H5Tequals() calls 3) retrieve datatype information at dataset level not each element level for compound datasets Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19406] Purpose:Jonathan Kim2010-09-161-0/+8
| | | | | | | | | | | Add --exclude-path option Description: Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani and heiwa
* [svn-r19400] Purpose:Jonathan Kim2010-09-161-5/+5
| | | | | | | | | | Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly. Tested: jam, amani, heiwa
* [svn-r19252] Description:Quincey Koziol2010-08-191-1/+0
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes from branch to trunk: r19161: Fixed the part for matching the subset info with dataset r19189: BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump. Changed all references to use new data structure. Added tests for each subset parameter. r19190: Added new h5dump ddl files Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (h5committested on branch)
* [svn-r18759] pull r18757 from 1.8 branchAllen Byrne2010-05-111-3/+3
| | | | | | | | | Enable tools lib to be built as a dll on windows. Added two get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated error_mesg() and warn_mesg() to remove progname argument and use get functions Tested: Windows, linux
* [svn-r18266] Purpose:Jonathan Kim2010-02-161-1/+2
| | | | | | | | | | | | | | | bugzilla 1754: h5diff: support comparing through links. (original check-in svn revision #18164) Description: fix the hang issue in parallel mode when compare external-link. add --no-dangling-links option. add test cases (#450-#459) relate to the new option. improve test script to check exit code. update --help relate to the new options. correct some indentations. Tested: h5committest (jam, amani and linew)
* [svn-r18164] Purpose:Jonathan Kim2010-01-251-0/+1
| | | | | | | | | | | | | | | Add a feature to compare through links. Relate to bugzilla report 1754. Description: Currently, h5diff command only compares the name(path) of target object not the actual data. With this feature, h5diff will go through the link(s) and figure out the actual object at the end of the link and compare data if exist. Internally we have hard-link, soft-link, external-link (as part of user_defined-link). This feature will provide a user transparent experience when comparing link objects as the user can specify any of those 3 type of links to be compared in any combination. Tested on Jam.
* [svn-r17466] " Use strict equality as defaultPeter Cao2009-09-111-15/+16
| | | | | | " Use "--use-system-epsilon" for system EPSILON " Use "-p" or "-d" for whatever user's choice of epsilon " Use "-p 0" or "-d 0" for strict equality (same as default)
* [svn-r16461] Bug fix: for compound types, the not comparable test for ↵Pedro Vicente Nunes2009-02-111-1/+2
| | | | | | | | | | | | | | | | | | | | members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: windows, h5committest
* [svn-r16348] #1368 (E1) h5diff: implement "not comparable" messages. ↵Pedro Vicente Nunes2009-01-261-1/+2
| | | | | | | | Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16300] Added an option to avoid dealing with NaNs Pedro Vicente Nunes2009-01-131-0/+1
| | | | | | | -N, --nan Avoid NaNs detection Note: there is no shell script run for datasets with NaN because the output is non portable (different results and NaN strings for different systems) Tested: windows, linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-291-1/+0
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15977] merge rev 15866 from 1.8 branch into trunk (diffs for unsigned ↵Pedro Vicente Nunes2008-10-281-11/+28
| | | | | | long long) tested: windows, linux
* [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-041-0/+2
| | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux, solaris
* [svn-r14154] Description:Quincey Koziol2007-09-251-1/+1
| | | | | | | | | | | | | | | | | | | | Finish deprecating last H5G symbol (H5G_obj_t) - yay! Lots of misc. library fixes to remove confusion between links and objects. The tools could still use another pass, to remove h5trav_type_t type and make the correct distinction between links & objects. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14144] Description:Quincey Koziol2007-09-131-147/+146
| | | | | | | | | | | | | | | | Move H5Gget_objinfo() to deprecated symbols section and retarget internal usage to H5Lget_info()/H5Oget_info(). Misc. other code cleanups... Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14136] Description:Quincey Koziol2007-09-061-4/+0
| | | | | | | | | | | | | | Move H5Gget_num_objs() and several minor macros, etc. to deprecated symbols section, replacing it with H5Gget_info(). Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13451] Pedro Vicente Nunes2007-03-051-6/+5
| | | | | | | h5diff bug fix, attributes differences were not being count for total differences Revision of H5Ocopy call in h5repack
* [svn-r13368] Pedro Vicente Nunes2007-02-211-5/+3
| | | | Added a little format alignment to the printing of dimensions
* [svn-r13334] Added a new function to print the dimensions sizesPedro Vicente Nunes2007-02-191-2/+6
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* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13042] Pedro Vicente Nunes2006-12-111-3/+13
| | | | | added a size of array information when printing differences modified print_pos and diff_datum for having one extra argument *dims
* [svn-r13003] Pedro Vicente Nunes2006-12-011-2/+2
| | | | | | | | Cleaned warnings h5diff_array.c:804: warning: passing arg 1 of `fabs' as floating rather than integer due to prototype introduced double precision arithmetic when possible instead of single precision
* [svn-r12815] Pedro Vicente Nunes2006-10-251-130/+122
| | | | | | | | | | | | | | 1) added a new parameter to the h5diff function diff_array that contains the beginning position of the hyperslab, so that the total position in the array is printed correctly when reading by hyperslabs. 2) added a new test to h5diff that reads and diffs by hyperslabs. The test reads a 1GB dataset, from which a 1KB hyperslab was written with differences . 3) added the generation of 2 files to the generator program to test the h5diff hyperslab read. 4) changed the h5diff binary pre-generated file names to be more descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5) 5) changed the name of the h5repack options text file to info.h5repack
* [svn-r12687] reverted back some changes that inadvertedely added some ↵Pedro Vicente Nunes2006-09-261-7/+6
| | | | | | | | output to the parallel part of h5diff tested : heping parallel
* [svn-r12678] bug fixPedro Vicente Nunes2006-09-251-6/+7
| | | | | the number of atribute differences was not added to the total sum of differences
* [svn-r12199] Purpose:Pedro Vicente Nunes2006-04-041-2/+2
| | | | | | | | | | | | | | | | | | | bug fix Description: the percent error calculation in h5diff using double precision floating point were causing different results on the release and debug versions of Visual Studio version 6, due to a compiler bug Solution: used single precision (float) Platforms tested: windows linux solaris AIX Misc. update:
* [svn-r12134] Purpose:Pedro Vicente Nunes2006-03-221-14/+0
| | | | | | | | | | | | | | | | | | bug fix Description: 1) added a more explainative usage message 2) the percent relative error for the integer type (division) was being done using integer arythmetic; use floating point arythmetic instead 3) added a new test for integer percent Solution: Platforms tested: linux (32,64) AIX solaris Misc. update:
* [svn-r12126] Purpose:Pedro Vicente Nunes2006-03-211-10/+1
| | | | | | | | | | | | | | | | | bug fix Description: the compare check for the datatype sign was not done in the correct place, causing invalid comparisons to be made Solution: put it on the correct place Platforms tested: linux 32, 64 AIX Misc. update:
* [svn-r12112] Purpose:Pedro Vicente Nunes2006-03-171-21/+0
| | | | | | | | | | | | | | | | | | bug fixes Description: 1) the option logic for the print of long types was done incorrectly (extra lines of code that were not supposed to be there) 2) the print of loong long types was incorrect Solution: 1) removed the incorrect code 2) made a long long cast on the printf call Platforms tested: linux (32 and 64) solaris Misc. update:
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-120/+120
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11215] Purpose:Quincey Koziol2005-08-081-1/+1
| | | | | | | | | | | | | Bug fix & code cleanup Description: Fix another bug in the file mounting code and refactor the unmount code that it is simpler. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Too minor to require h5committest
* [svn-r10994] Purpose:Pedro Vicente Nunes2005-06-281-0/+1
| | | | | | | | | | | | | | | | | | | | | bug fix Description: when 2 objects were not comparable, the final print information for the non verbose mode printed "0 differences found" Solution: replaced instead with a Summary message that says "Some objects were not comparable" Platforms tested: linux solaris Misc. update:
* [svn-r9969] Purpose:Leon Arber2005-02-091-1/+2
| | | | | | | | | | | | | | | | | | | Correction to previous print_manager_output bugfix Description: Although the previous bugfix did fix all the errors, it was not the correct way to fix the problem. Since the manager will only buffer output when run in parallel mode, in serial mode this function should not even be called. Solution: Wrapped print_manager_output in #define's to prevent it from being included in serial builds. Platforms tested: heping (serial + parallel) Misc. update:
* [svn-r9964] Purpose:Albert Cheng2005-02-091-0/+4
| | | | | | | | | | | | | | bug fix Description: g++ was not happy with missing protocols of external functions. Added print_manager_output(void) and phdiff_dismiss_workers(void) to the public declarations. Platforms tested: Tested in sleipnir (g++) and heping (serial, pp) Misc. update:
* [svn-r9925] Purpose:Leon Arber2005-02-021-16/+0
| | | | | | | | | | | | | | | | | | | Bug Fix Description: Permanent fix for the incompatibilities between h5diff and h5repack. Solution: h5diff now contains the code to run both parallel and serial diffs. Depending on how the binary is called, it will run either the serial or the parallel versions respectively. Platforms tested: heping(serial + parallel), copper. Misc. update:
* [svn-r9877] Purpose:Leon Arber2005-01-271-0/+15
| | | | | | | | | | | | | | | | | Bug fix: Temporary fix for h5repack failures in all parallel builds. Description: The parallel additions to h5diff interfered with h5repack. Solution: Added a second set of "parallel" functions to h5diff.c. h5repack uses the serial versions, whereas h5diff will use the parallel versions. Also, h5diff will now be smart about when to enter parallel mode. If is run with mpirun with more than 1 task, it will enter parallel mode. Otherwise, it will stay in serial mode as before. Platforms tested: heping (serial and parallel) Misc. update:
* [svn-r9872] Purpose:Albert Cheng2005-01-261-108/+109
| | | | | | | | | | | | New feature. Description: Added new tool ph5diff. (Code done by Leon Arber.) Code is changed but test is not working yet. For now, it skipped all tests. Platforms tested: Tested in heping, serial and parallel modes.
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9533] Purpose:Pedro Vicente Nunes2004-11-161-0/+136
| | | | | | | | | | | | | | | | | | | | | | | enhanced performance for h5diff Description: the comparison cycle for the 2 buffers read from file was using a compare function where the type must be checked for each datum (e.g due to recursive calls in compound types) for atomic types this checking can be avoided Solution: introduced cycles for each one of the atomic integer and float class types Platforms tested: linux aix solaris Misc. update:
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