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* [svn-r18197] Description:Quincey Koziol2010-01-301-9/+9
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r17475] Added error handling to h5dump and region reference handling ↵Allen Byrne2009-09-141-7/+4
| | | | | | functions in the tools lib. Bring back from NPOESS. Added missing tests to h5dump test script for region references. Tested: local linux
* [svn-r17450] Bring h5dump single subsetting selection and region reference ↵Allen Byrne2009-09-041-3/+162
| | | | | | changes from NPOESS Tested: local linux smirom
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14131] Description:Quincey Koziol2007-08-301-1/+1
| | | | | | | | | | | | | | Move H5Giterate() and H5G_iterate_t to deprecated symbols section, replacing them with H5Literate and H5L_iterate_t respectively. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13874] Pedro Vicente Nunes2007-06-181-3/+3
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13757] Pedro Vicente Nunes2007-05-161-1/+1
| | | | | | | | | | | h5repack and h5diff hyperslab I/O changed the limit on which hyperslab I/O is done from 1GB to 128MB h5repack currently tests this feature by defining a dataset with dimensions of 128MB + 1byte (the datum being 1 byte integer), in which a 1Kb hyperslab was written. tested: linux there were some errors in running the tests, but these were in the library, due to a recent check-in that will be fixed shortly (at least we hope :-) )
* [svn-r13503] Pedro Vicente Nunes2007-03-121-2/+2
| | | | Preparation for making 1.6 and 1.7 h5dump more similar and 1.6 to have 1.7 fixed bugs incorporated
* [svn-r13297] Description:Quincey Koziol2007-02-141-1/+1
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-131-2/+2
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13076] Pedro Vicente Nunes2006-12-191-0/+3
| | | | | | | | | | | | | | fix for bugzilla bug #551 several programming errors contributed to this bug 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) several index counters were declared as int, use hsize_t instead 3) the numerical format passed for printf was %lu, defined one compatible with hsize_t instead (unsigned long long)
* [svn-r12784] Pedro Vicente Nunes2006-10-191-0/+17
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12634] Purpose:Albert Cheng2006-08-281-2/+1
| | | | | | | | | | | | Code cleanup. Description: Removed argc and argv from the function arguments of h5tools_get_fapl() and h5tools_fopen(). They were used to call MPI_Init() which was no longer needed. Tested: heping (serial and parallel).
* [svn-r12513] Pedro Vicente Nunes2006-07-281-0/+3
| | | | | new feature h5dump binary output. use little and big endian type conversions
* [svn-r12444] Purpose:Pedro Vicente Nunes2006-06-281-1/+3
| | | | | | | | | | | | | | | | | | | | new feature Description: added support for h5dump to dump binary data using the file type format added one test to the test script that tests this Solution: Platforms tested: mir shanti copper Misc. update:
* [svn-r12437] Purpose:Pedro Vicente Nunes2006-06-261-1/+3
| | | | | | | | | | | | | | | | | | | | | | new feature. h5dump output of binary data Description: a new switch -b FILE_NAME that dumps the contents of memory data to file FILE_NAME in binary form new program binread.c that reads the contents of this file and outputs it to stdout added a test for the h5dump shell script that does a run of -b the binread.c program reads the data used in this run, usage is ./binread FILE_NAME Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r11886] Purpose:Quincey Koziol2006-01-231-149/+10
| | | | | | | | | | | | | Code cleanup Description: Check in some of the code cleanups from working on the external link support. (This doesn't include any of the external link features) Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX.4 (amazon) Linux 2.4
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-12/+12
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10738] Purpose:Pedro Vicente Nunes2005-05-091-21/+22
| | | | | | | | | | | | | | | | | | | bug fix 366 Description: the printing of the array indices was done relatively to the stripmine data (data read by hyperslabs when its memory requiremnts are too large) this was causing an incorrect numbering of the array indices (the next read would initialize the indices to zero) Solution: added a field to the print context that keeps track of the stripmine position and pass to the rendering function the total element position Platforms tested: Linux Misc. update:
* [svn-r10060] Purpose:Robert E. McGrath2005-02-211-0/+2
| | | | | | | | | | | | | | feature Description: h5dump support for scaleoffset compression Solution: Platforms tested: verbena, shanti,copper64 Misc. update:
* [svn-r9994] Purpose:Quincey Koziol2005-02-111-0/+1
| | | | | | | | | | | Bug fix Description: Unbreak build by adding definition for NBIT macro. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r9961] Pedro Vicente Nunes2005-02-081-2/+8
| | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix, new test file Description: h5dump was not properly displaying array indices > 3D Solution: added the same algorythm and data structure that h5diff uses to calculate the array index from a element number position Platforms tested: linux solaris Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9496] Purpose:Robert E. McGrath2004-11-021-0/+1
| | | | | | | | | | | | | | | | | | | | | | Fix SZIP filter to dynmically detect encoder. Description: Solution: See: http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf Changes to h5repack tests, contingent on detecting SZIP encoder. Note new program: testh5repack_detect_szip Checks fo rencoder, prints out "yes" or "no". Used by hrepack.sh to detect encoder. Can also be used for windows tests. This is only used as part of the tests. Had to modify Makefile to build and clean this program.
* [svn-r9370] Purpose:Quincey Koziol2004-10-061-3/+3
| | | | | | | | | | | | | | | Refactor code Description: Refactor common code for determining the native type for using in the tools into separate routine. Also, reduce diffs between the two branches and bring back some fixes from the development branch to the release branch. Platforms tested: FreeBSD 4.10 (sleipnir) too minor to require h5committest
* [svn-r8715] Purpose:Pedro Vicente Nunes2004-06-221-3/+2
| | | | | | | | | | | | | | | | | | | | | | h5dump output change, new tests Description: the storage layout output format the storage layout output format had some changes same for the user defined filter add an option (-y) for not printing the array indices (default is print indices ) the option for escaping non printable characters covers all characters (default is not escape) (this might be not very portable, the test files are tstring.ddl and tstringe.ddl ) add tests for the new options Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8644] Purpose: h5dump new featuresPedro Vicente Nunes2004-06-101-0/+3
| | | | | | | | | | | | | | | | | | | | | | | Description: added the code for print strings with new line and display the path of references (new source files h5tools_ref.c and .h ) added a test suite in testh5dump.sh.in for ( note : to create testh5dump.sh , one must redo ./configure; this detects the availability of filters and generates testh5dump.sh accordingly) 1) storage layout 2) fill value 3) print reference with path 4) print strings with new lines 5) filters Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8622] Purpose:Pedro Vicente Nunes2004-06-071-1/+26
| | | | | | | | | | | | | | | | | | | | | | | | | h5dump new version Description: added the changes already made for 1.6 support for dumping of 1) filters 2) storage layout 3) fill value 4) comments 5) superblock 6) file contents 7) array indices Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8563] *** empty log message ***Raymond Lu2004-05-211-2/+3
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* [svn-r8229] Purpose:Pedro Vicente Nunes2004-03-021-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) new function for tools library 2) new test script for h5repack Description: 1) currently all the tools (h5dump, h5diff, etc) do not check if a filter is available for reading some dataset that might have a filter not available on the current configuration (the behaviour of the tools until now was to trigger a library error, saying that the dataset cannot be read due to the lack of the filter) Solution: 1) added a new function h5tools_canreadf that checks if a dataset can be read depending on the availability of filters. this function was added in calls for h5diff and h5repack. instead of triggering the library error, a message is printed, saying that the dataset cannot be read (the print is optional, it is on on verbose mode) 2) added a shell script that tests the commannd line tool behaviour of h5repack the script does a series of runs of h5repack with several options on the same file (this file test4.h5 was added to the testfiles dir). then, it runs the h5diff tool, with the input and output files , in each run. the goal of the test is also to check item 1) . the binary file was saved with filters that might not be available on other configurations Platforms tested: linux (all filters enabled) linux (some filters disabled) solaris (some filters disabled) AIX (some filters disabled) windows (all filters on and off ) Misc. update:
* [svn-r8151] Purpose:Quincey Koziol2004-02-041-1/+2
| | | | | | | | | | | | Bug fix Description: Fix h5tools routines to not try to call MPI_Init() unless an MPI-based VFD is actually used. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Linux 2.4 (verbena) w/parallel
* [svn-r8143] Purpose:Quincey Koziol2004-02-021-4/+0
| | | | | | | | | | | | | | New Feature. (Contributed by Robb) Description: Allow h5ls to specify a VFL with the '--vfl=' command line flag. Add MPI-I/O & MPI-POSIX VFL drivers to list of drivers available for h5ls and h5dump. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel h5committested
* [svn-r7401] Purpose:Quincey Koziol2003-08-251-1/+0
| | | | | | | | | | | | | | | | | | Code cleanup Description: Remove various "fixtype" routines which duplicate (and actually pre-date) the functionality in H5Tget_native_type in favor of having the tools call H5Tget_native_type(). This provides the same functionality (actually better functionality, since the old "fixtype" routines didn't handle alignment of compound fields correctly) and reduces the amount of code to maintain. Add additional tests to dump out a "complex" compound datatype which exercises more code in the library for aligning compound fields correctly. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6544] Purpose:Bill Wendling2003-03-311-4/+14
| | | | | | | | | | | | Update Description: Update copyright statement Platforms tested: Linux (Comment change only) Misc. update:
* [svn-r6296] Purpose:Quincey Koziol2003-01-171-1/+1
| | | | | | | | | | Code cleanup Description: Reduce warnings on Windows Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r4282] Bill Wendling2001-07-301-3/+5
| | | | | | | | | | | | | | | Purpose: Bug Fix/Feature Add Description: Added new flag ("-f" and "--family") to allow user to specify which file driver to use to open the file. If they don't specify anything, then it defaults to the old behaviour of trying each driver in turn until one actually opens the file. If the driver the user specified doesn't succeed in opening the file, then we do NOT try other file drivers. Platforms tested: Linux
* [svn-r4012] Purpose:Quincey Koziol2001-06-181-1/+1
| | | | | | | | Clean up compiler warnings. Description: Just code neatening mostly, some casts, etc. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3573] Purpose:Bill Wendling2001-03-081-102/+34
| | | | | | | | | | Code Cleanup Description: Moved some code out which wasn't specific to the h5tools into the h5tools_utils and h5tools_str modules. Also started on adding the subsetting feature to the dumping. Platforms tested: Linux
* [svn-r3517] Purpose:Bill Wendling2001-02-261-16/+41
| | | | | | | | | | | | More Subsetting Description: Wanted to do a check-in of the current subsetting stuff. The command-line parsing was already in there. I now added the feature to the h5dump_t structure and it now outputs the new SUBSET DDL stuff in the correct format. It doesn't yet do the actual subsetting, but we're getting there... Platforms tested: Linux
* [svn-r3490] Purpose:Bill Wendling2001-02-221-0/+517
Code Movement Description: Moved tools code into own separate directories. This is the library code all of them share. Platforms tested: Linux, Kelgia
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