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* HDFFV-10384 Add optional arg to enable-error-stackAllen Byrne2018-02-141-1/+1
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* Minor warning fixes in the tools.Dana Robinson2017-05-251-1/+1
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* HDFFV-8611 change h5repack to save the root group creation orderAllen Byrne2017-05-221-0/+4
| | | Added test and new arguments to control the the input file parsing.
* HDFFV-10186 Add endianess to bitfield and fix testsAllen Byrne2017-05-101-1/+0
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Bring SWMR-related tools changes from revise_chunks to develop.Quincey Koziol2016-12-111-0/+9
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* [svn-r30113] Description:Quincey Koziol2016-06-281-9/+9
| | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29889] HDFFV-9775: Add enable-error-stack to tools lib and refactor ↵Allen Byrne2016-05-041-5/+8
| | | | h5repack error handling.
* [svn-r29534] Normalization w/ revise_chunks in preparation for big merge.Dana Robinson2016-03-231-1/+1
| | | | | | | | | tools directory Also fixes a minor Java test output error. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
* [svn-r27835] Description:Quincey Koziol2015-09-211-0/+4
|\ | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27801] Minor warning fixes in the tools.Dana Robinson2015-09-161-0/+4
| | | | | | | | Tested on: jam (too minor for h5committest)
* | [svn-r26440] Added new structure, removed ";", used static hyperslab arrays.Allen Byrne2015-03-121-6/+7
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* | [svn-r26383] Add MAPPING to VDS outputAllen Byrne2015-03-061-0/+1
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* | [svn-r26353] Add VDS selection defines for ALL and NONEAllen Byrne2015-03-041-0/+2
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* | [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs.Allen Byrne2015-03-041-1/+4
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* | [svn-r26318] Update virtual layout to latest changesAllen Byrne2015-02-261-6/+2
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* | [svn-r26297] Changed example and h5dump according to suggestions at today's ↵Elena Pourmal2015-02-251-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | code review VDS-176. BNF has been updated too. Now h5dump displays VDS like this: HDF5 "vds.h5" { GROUP "/" { DATASET "VDS" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) } STORAGE_LAYOUT { VIRTUAL { HYPERSLAB { (0,0)-(0,5) }; a.h5; A; ALL; HYPERSLAB { (1,0)-(1,5) }; b.h5; B; ALL; HYPERSLAB { (2,0)-(2,5) }; c.h5; C; ALL; } } } FILTERS { ....... I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow. Tested on jam
* | [svn-r26285] add virtual mapping output blank selections but actual file and ↵Allen Byrne2015-02-231-0/+9
| | | | | | | | dataset names.
* | [svn-r26284] Add VIRTUAL layout to h5dump - still need a tools testfile createdAllen Byrne2015-02-231-1/+5
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* [svn-r24224] HDFFV-8529: Space separate define stringsAllen Byrne2013-09-301-1/+1
| | | | Tested: h5committest
* [svn-r23953] Update stream handling to allow binary mode - due to unjam fix.Allen Byrne2013-07-311-3/+3
| | | | Tested: local linux
* [svn-r23944] Move stream functions into tools lib.Allen Byrne2013-07-301-2/+6
| | | | Tested: local linux
* [svn-r23190] HDFFV-8285: Add suppress ddl option.Allen Byrne2013-01-221-0/+7
| | | | Tested: local linux
* [svn-r22921] Description:Quincey Koziol2012-10-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Review Coverity changes and bring them back to trunk. (QK & JK) r20402: Added #includes for h5tools.y or h5tools_utils.h as required to remedy implicit function declarations which caused compiler warnings and coverity issues 703-4 and 708-11. r20414: This is related to the previous checkin r20399. There were incorrect updates which caused incorrect behavior when no file was given. Also possible segfault when handling hyperslab options. Simplify the code changes. r20449: Description: Modified H5E_walk2_cb to check return value of H5I_object_verify. r20450: fixed coverity 813 Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, debug & threadsafe (too minor to require h5committest)
* [svn-r22602] Allen Byrne2012-07-251-2/+1
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* [svn-r21985] Tools must call h5tools_init before command_line parsing or ↵Allen Byrne2012-02-241-1/+3
| | | | | | | | using tools_mesg functions. Tools library uses alais variables for stdout, stderr and tools library uses HDfprintf() functions. Tested: local linux
* [svn-r21957] Windows DLL macro missing on data in headerAllen Byrne2012-02-181-3/+3
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* [svn-r21953] HDDFV-7560: h5dump refactoringAllen Byrne2012-02-171-37/+52
| | | | Tested: local linux
* [svn-r21586] Description:Jonathan Kim2011-10-141-17/+0
| | | | | | | | | Added a funtion to reset dataset & hyperslab buffer size for h5repack from an environment variable. This is performance debugging purpose for now. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE), cmake
* [svn-r20713] Packed Bits Merge:Allen Byrne2011-05-031-3/+0
| | | | | | | | | removed option defines and #ifdef/#endif refactored all printf to HDfprintf in h5dump.c formatted and indention improvements synched with 1.8 branch Tested: local linux
* [svn-r20677] Merge packed bits option from 1.8 branch to trunk. CMake only. ↵Allen Byrne2011-04-291-0/+6
| | | | | | Autotools merge to come. Tested: local Linux
* [svn-r20676] Purpose:Jonathan Kim2011-04-291-0/+1
| | | | | | | | | | | | | | | | - HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Fixed: 1) adding h5tools_is_obj_same() function to check if two given IDs or paths point to the same object. This function can be very useful for other tools and applications. 2) using h5tools_is_obj_same() at h5diff() and diff() in h5diff.c. If two paths point to the same object, there is no need to check the details of the object since we know there is no difference. The fix will increase the performance by skipping the content comparison. It also fixed the problem of reporting difference for some cases of comparing the same file, e.g. empty files or files with incomparable objects the same file. Test update: Updat prvious test cases (171, 172, 530) affected by this fix, so they still perfrom originally intended testing without bypassing. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20285] Purpose:Jonathan Kim2011-03-211-1/+1
| | | | | | | | | | | | | | | | | Improve the previous fix for Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Related to the previous checkin r20270 and r20266. Improve h5tools_detect_vlen() code for better performance. H5Tdetect_class already recusive on given type so don't need to be part of recusive call again. Also improve error handlings in h5tools_detect_vlen and h5tools_detect_vlen_str functions. Also updated h5ls and h5dump code accordingly. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
* [svn-r20270] Purpose:Jonathan Kim2011-03-181-0/+1
| | | | | | | | | | | | | | | | Improve the previous fix for Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Improve the fix along with the previous checkin r20266. Add a new function to tool lib, h5tools_detect_vlen_data() which return TRUE if include any kind of vlen data all at once, either VLEN-data or VLEN-string and so on. Also updated h5ls and h5dump code accordingly. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
* [svn-r20247] Change name of new VLEN function from H5Tdetect_vlen_str to ↵Allen Byrne2011-03-141-1/+1
| | | | | | | | h5tools_detect_vlen_str to match other functions in tools lib. Added back test for H5Tdetect_class of H5T_VLEN after each instance of above function to catch all VLEN types in h5dump. Tested: local linux
* [svn-r20216] Valgrind fix for memory leak in h5tools_dump_xxx which is fixed ↵Allen Byrne2011-03-091-0/+1
| | | | | | | | by adding a new function; htri_t H5Tdetect_vlen_str(hid_t tid) to h5tools. This needs to be called before any H5Aread/H5Dread and if TRUE, then call vlen_reclaim function after the corresponding h5tools_dump_xxx(). Tested: local linux and valgrind
* [svn-r19252] Description:Quincey Koziol2010-08-191-4/+9
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes from branch to trunk: r19161: Fixed the part for matching the subset info with dataset r19189: BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump. Changed all references to use new data structure. Added tests for each subset parameter. r19190: Added new h5dump ddl files Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (h5committested on branch)
* [svn-r18816] Move progname and d_status functions from h5tools to h5tools_utilAllen Byrne2010-05-141-4/+0
| | | | | Tested: linux and windows
* [svn-r18759] pull r18757 from 1.8 branchAllen Byrne2010-05-111-15/+28
| | | | | | | | | Enable tools lib to be built as a dll on windows. Added two get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated error_mesg() and warn_mesg() to remove progname argument and use get functions Tested: Windows, linux
* [svn-r18197] Description:Quincey Koziol2010-01-301-9/+9
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
* [svn-r17475] Added error handling to h5dump and region reference handling ↵Allen Byrne2009-09-141-7/+4
| | | | | | functions in the tools lib. Bring back from NPOESS. Added missing tests to h5dump test script for region references. Tested: local linux
* [svn-r17450] Bring h5dump single subsetting selection and region reference ↵Allen Byrne2009-09-041-3/+162
| | | | | | changes from NPOESS Tested: local linux smirom
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r14131] Description:Quincey Koziol2007-08-301-1/+1
| | | | | | | | | | | | | | Move H5Giterate() and H5G_iterate_t to deprecated symbols section, replacing them with H5Literate and H5L_iterate_t respectively. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r13874] Pedro Vicente Nunes2007-06-181-3/+3
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13757] Pedro Vicente Nunes2007-05-161-1/+1
| | | | | | | | | | | h5repack and h5diff hyperslab I/O changed the limit on which hyperslab I/O is done from 1GB to 128MB h5repack currently tests this feature by defining a dataset with dimensions of 128MB + 1byte (the datum being 1 byte integer), in which a 1Kb hyperslab was written. tested: linux there were some errors in running the tests, but these were in the library, due to a recent check-in that will be fixed shortly (at least we hope :-) )
* [svn-r13503] Pedro Vicente Nunes2007-03-121-2/+2
| | | | Preparation for making 1.6 and 1.7 h5dump more similar and 1.6 to have 1.7 fixed bugs incorporated
* [svn-r13297] Description:Quincey Koziol2007-02-141-1/+1
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-131-2/+2
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
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