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* [svn-r13576] Pedro Vicente Nunes2007-04-031-1/+1
| | | | | | | | bug fix a call was made to printf instead of parallel_print tested linux parallel
* [svn-r13573] Pedro Vicente Nunes2007-04-021-2/+5
| | | | | | | | | | | | Bug fixes Reset external file list slots name_offset to a state when created (0) in H5P_dcrt_copy so that it conforms to an assertion in H5D_update_entry_info that assumes the name_offset is 0 at this point this fixes the problem of h5repack and external files, add a new test and files for an external file h5diff, check for an error return in H5D_get_storage_size tested linux 32, 64
* [svn-r13549] Description:Quincey Koziol2007-03-272-12/+14
| | | | | | | | | Check in changes from Elena and I to get pgcc compiler working again. Primarily (all?) changes to move from using 'hsize_t' as array index to using something else ('size_t') mostly. Tested on: Linux/32 2.4 kagiso w/pgcc
* [svn-r13505] make comments similar in 1.7 and 1.6Pedro Vicente Nunes2007-03-121-1/+1
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* [svn-r13503] Pedro Vicente Nunes2007-03-126-207/+207
| | | | Preparation for making 1.6 and 1.7 h5dump more similar and 1.6 to have 1.7 fixed bugs incorporated
* [svn-r13451] Pedro Vicente Nunes2007-03-055-309/+313
| | | | | | | h5diff bug fix, attributes differences were not being count for total differences Revision of H5Ocopy call in h5repack
* [svn-r13441] Pedro Vicente Nunes2007-03-012-33/+26
| | | | make 1.7 h5repack more similar to 1.6 h5repack
* [svn-r13431] Pedro Vicente Nunes2007-02-281-21/+20
| | | | | | Bug fix: the macro used for percentage in the unsigned types needed a cast to signed (the difference can be negative) Unlike the 1.6 branch the unsigned long long conversion to float is supported by H5Tconvert , so the test commented for 1.6 is run (tools/testfiles/h5diff_16_2.txt)
* [svn-r13418] Cleaned up some old paths in config/commence.am and removed ↵James Laird2007-02-271-7/+7
| | | | | | | | some comments in the template file config/Makefile.am.blank. This is just a cleanup checkin. Tested on kagiso.
* [svn-r13396] Pedro Vicente Nunes2007-02-261-165/+309
| | | | Bug fix: Some output was being printed in quiet mode
* [svn-r13379] Added 'make help' target. This actually runs a script, ↵James Laird2007-02-231-1/+4
| | | | | | | | bin/makehelp (formatting the output in the makefile was pretty hard). Tested that make still works on kagiso; no code changes at all.
* [svn-r13368] Pedro Vicente Nunes2007-02-215-90/+85
| | | | Added a little format alignment to the printing of dimensions
* [svn-r13365] Bug fix.Albert Cheng2007-02-211-26/+0
| | | | | | | | | | | | Description: Multiple copies of Copyright appeared in Makefile.in. This was due to automake copying the copyright right in the included files such as config/commence.am. Solution: Automake treats double hashes as comments and does not copy them to Makefile.in. Changed all the copyright notices in config/*.am to use double hashes for the Copyright right notice. Tested: kagiso via bin/reconfigure.
* [svn-r13359] Fixed a bug where the -shlib flag for h5cc would end up on the ↵James Laird2007-02-201-5/+31
| | | | | | | | Dependency line in the Makefile. Makefile change only. Tested on kagiso, to be used to test on cobalt.
* [svn-r13334] Added a new function to print the dimensions sizesPedro Vicente Nunes2007-02-195-83/+128
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* [svn-r13297] Description:Quincey Koziol2007-02-142-65/+65
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-132-6/+6
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13264] Updated Makefile.am with new THG copyright notice.Albert Cheng2007-02-072-4/+6
| | | | Ran reconfigure to generate the Makefile.in files.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-0721-42/+63
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13181] Added a configure check to prevent a failure on Cygwin.James Laird2007-01-231-1/+1
| | | | | | | | | | | | | | It seems that while Cygwin supports the time command, it has trouble with the syntax srcdir="../../hdf5/test" time ./testhdf5 and complains. The solution is to test the above case in configure and not to use the time command if it fails; Cygwin is fine with srcdir="../../hdf5/test" ./testhdf5 Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility problem since every platform but Cygwin is already fine with the current syntax.
* [svn-r13134] Pedro Vicente Nunes2007-01-101-96/+172
| | | | | | | | | | New version of the function h5tools_dump_simple_subset, to display subsetting. The new algorithm is: Introduced an outer loop for cases where dimensionality is greater than 2D. In each iteration a 2D block is displayed by rows in a inner loop. The remainning slower dimensions above the first 2 are incremented one at a time in the outer loop Note: when blocks are introduced, the display is not correct. This is a bug that requires an improvement of the algorithm.
* [svn-r13132] Pedro Vicente Nunes2007-01-101-7/+5
| | | | Fixed #720 h5dump: improve how region references are displayed. h5dump now uses the new API function H5Rget_name to display the name of the dataset referenced instead of its ID. Added a case to the script test file
* [svn-r13076] Pedro Vicente Nunes2006-12-192-3/+8
| | | | | | | | | | | | | | fix for bugzilla bug #551 several programming errors contributed to this bug 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) several index counters were declared as int, use hsize_t instead 3) the numerical format passed for printf was %lu, defined one compatible with hsize_t instead (unsigned long long)
* [svn-r13064] Pedro Vicente Nunes2006-12-142-52/+86
| | | | | | | | | | | | | | | | | | | Fix several bugs 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by Position of I(z,y,x) = index_z * size_y * size_x + index_y * size_x + index_x And pass that position to the function that dumps data, h5tools_dump_simple_data. 3) several index counters were declared as int, use hsize_t instead 4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
* [svn-r13042] Pedro Vicente Nunes2006-12-112-196/+244
| | | | | added a size of array information when printing differences modified print_pos and diff_datum for having one extra argument *dims
* [svn-r13032] Pedro Vicente Nunes2006-12-071-115/+118
| | | | introduced a new macro PDIFF to calculate differences for unsigned types
* [svn-r13031] Pedro Vicente Nunes2006-12-071-1576/+1575
| | | | introduced more ABS macro use
* [svn-r13026] Pedro Vicente Nunes2006-12-061-23/+26
| | | | fix some memory allocation problem with info->prefix
* [svn-r13025] Pedro Vicente Nunes2006-12-061-2/+2
| | | | | | compiler warning clean ../../../hdf5/tools/lib/h5tools_ref.c:257: warning: old-style parameter declaration
* [svn-r13024] Pedro Vicente Nunes2006-12-061-1/+1
| | | | | | | | fixed 2 initializations of char* with HDstrdup and HDcalloc info->prefix = HDcalloc(1, 1); fname = HDstrdup(argv[opt_ind]); some were exposed by compiler warnings
* [svn-r13008] Pedro Vicente Nunes2006-12-011-4/+4
| | | | | | more compiler warning ../../../hdf5/tools/lib/h5diff_attr.c:214: warning: passing arg 4 of `diff_array' with different width due to prototype
* [svn-r13007] Pedro Vicente Nunes2006-12-011-13/+11
| | | | | | cleaned more warnings ../../../hdf5/tools/lib/h5diff_attr.c:214: warning: passing arg 4 of `diff_array' with different width due to prototype
* [svn-r13005] removed the PER_FLOAT macroPedro Vicente Nunes2006-12-011-24/+12
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* [svn-r13003] Pedro Vicente Nunes2006-12-012-2883/+2822
| | | | | | | | Cleaned warnings h5diff_array.c:804: warning: passing arg 1 of `fabs' as floating rather than integer due to prototype introduced double precision arithmetic when possible instead of single precision
* [svn-r13000] more warnings clean up, modified PER macro to avoid unnecessary ↵Pedro Vicente Nunes2006-11-301-49/+55
| | | | | | floating point comparison ../../../hdf5/tools/lib/h5diff_array.c: warning: comparing floating point with == or != is unsafe
* [svn-r12999] cleaned more warningsPedro Vicente Nunes2006-11-301-8/+22
| | | | h5diff_array.c:127: warning: declaration of 'per' shadows a global declaration
* [svn-r12998] Pedro Vicente Nunes2006-11-291-2/+2
| | | | | | cleaned compiler warning ../../../hdf5/tools/lib/h5diff_array.c:139: warning: declaration of 'per' shadows a global declaration
* [svn-r12984] Pedro Vicente Nunes2006-11-271-23/+57
| | | | | | | Added a relative error formula to deal with floating point uncertainty in the comparison of floats and double types. Added new tests for this feature to the file generator program and to the shell script
* [svn-r12953] h5repack code revision, avoid one unnecessary call to file ↵Pedro Vicente Nunes2006-11-201-195/+207
| | | | open/close in the cheking of objects when there are none requested by the user
* [svn-r12932] Description:Quincey Koziol2006-11-171-9/+9
| | | | | | | | | | | | Basic support for H5Literate() routine. Still needs to be fleshed out and refactored to simplify. Also, needs tests. :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12929] Hopefully this really is a fix for the tg-login errors.James Laird2006-11-161-3/+1
| | | | | | | | | | | The version of libtool used by HDF5 isn't directly affected by the reconfigure script; instead, libtoolize --force must be used by hand. Libtool was the source of the problem, so rolling its version back to 1.5.14 should solve the issue (at least temporarily). Reconfigure should still work on both heping and kagiso. Tested on heping, kagiso, and tg-login3.
* [svn-r12928] code revisionPedro Vicente Nunes2006-11-164-30/+30
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* [svn-r12911] Backed up to previous versions of automake and libtool. ↵James Laird2006-11-141-1/+3
| | | | | | | | Hopefully this will fix issues on tg-login3. bin/reconfigure should still work on both heping/mir and kagiso.
* [svn-r12895] Description:Quincey Koziol2006-11-131-4/+4
| | | | | | | | | | | | | Add new H5Lget_val_by_idx() routine & tests. Also includes most of changes for H5Ldelete_by_idx() routine. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12887] A fix for linking issues.James Laird2006-11-101-0/+1
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12883] Pedro Vicente Nunes2006-11-081-0/+20
| | | | | | h5dump bug 701. Symptom: The creation of a hardlink pointing to the root group "/" causes h5dump to display it as a link pointing to itself. Cure: the root group was not being inserted in the table that keeps track of object names and links. Added a test for this in the test generation program, the creation of a hardlink to the root
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-081-7/+9
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12864] Description:Quincey Koziol2006-11-061-4/+4
| | | | | | | | Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last Friday afternoon. Tested on: Linux/32 2.6 (chicago)
* [svn-r12835] Description:Quincey Koziol2006-10-312-9/+8
| | | | | | | | | Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API changes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12831] Changed the API for "unpacking" an external link value to take ↵James Laird2006-10-301-1/+1
| | | | | | | | | | the size of the linkval buffer, per Elena and Frank's suggestions while revising the documentation. Added error checking using this size, as well as a couple of tests. Tested on juniper, kagiso, and sol.
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