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* OESS-98 add CMake option to build plugins project within hdf5Allen Byrne2020-10-161-2/+2
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* Merge changes from developAllen Byrne2020-10-082-5/+5
| | | | | Comments and whitespace Skip file-locking and cache changes
* Source formattedAllen Byrne2020-10-0124-6158/+6289
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* Add clang-format changes from develop.Allen Byrne2020-09-281-0/+13
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* Normalization of tools with developDana Robinson2020-08-183-3/+3
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* HDFFV-9989 Merge h5repack merge/prune from developAllen Byrne2020-08-152-26/+25
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* Sync with developDana Robinson2020-08-0115-4021/+3569
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* Whitespace cleanupAllen Byrne2020-05-121-2/+2
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-071-6/+2
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* TRILAB-192 merging warnings changes from developAllen Byrne2020-03-301-0/+6
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* Merge changes from develop mostly cmake 3.12 minimum versionAllen Byrne2020-02-231-1/+1
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* Squashed commit of the following:David Young2020-01-311-89/+91
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94 Author: Kimmy Mu <kmu@hdfgroup.org> Date: Wed Jan 29 14:12:18 2020 -0600 Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12 * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1': pick up missing piece from merge Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop remove redundent definition Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop missing prototype warning prototype issue Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 11:43:55 2020 -0600 testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings. commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50 Author: David Young <dyoung@hdfgroup.org> Date: Wed Jan 29 10:47:30 2020 -0600 Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c. commit 035bfa0769a4012881fc659b673bacf44d146537 Author: David Young <dyoung@hdfgroup.org> Date: Tue Jan 28 20:35:28 2020 -0600 Reduce differences between my -Werror branch and `develop`: Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Merge changes from develop to fix various issuesAllen Byrne2020-01-304-141/+74
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* Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to developKimmy Mu2020-01-281-1/+1
| | | | | | | | | * commit '406330addf45529ecdd088f4d22e9aab9a03661d': rename macro change condition pick up from Dave's fix leave Wswitch-default for later fix fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
* Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to developKimmy Mu2020-01-282-4/+4
| | | | | | * commit 'af5c33afabdae2e39bb45eb1b3e9c8366da01145': remove unnecessary stuff squash cast warning fix
* Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to developKimmy Mu2020-01-281-3/+3
| | | | | | | * commit '9afaf94bef740f89958a1a8aae369d5f607845f4': not use hdf5 private header fix float type cmp warning fix float type cmp warning
* Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to developKimmy Mu2020-01-281-1/+1
| | | | | | | | | | | * commit '145ef3ceee20c28a443bd11507c58858bea3f889': more cleanup change it back pick up missing piece fix unused related warnings removed unused parameter more fix and address comments remove unsed var,function,macro, etc
* Change tools debug macros to not use error stackAllen Byrne2020-01-239-193/+132
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-01-1913-212/+338
|\ | | | | | | | | | | | | * commit '29efed58a861346be122b1ff0c50741206742322': Squashed commit of the token_refactoring branch: Add test for reference shutdown issue H5R: set app ref when incrementing ref_count on location held by reference (fix HDFFV-10992)
| * Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1913-212/+338
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* | Merge perform standalone changes from developAllen Byrne2020-01-171-0/+10
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* Merge tools changes from developAllen Byrne2020-01-1314-1189/+1206
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* Update file with changes from developAllen Byrne2020-01-121-46/+39
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-01-071-3/+3
|\ | | | | | | | | | | | | | | | | | | | | * commit '7116d82f6b685261b5b4e64fada1a0a031cd7341': Remove mismerged code Cherry pick of 0225e6d5969 Cleanups from PR reviews Remove unnecessary H5CX call Refactor H5Dvlen_get_buf_size to use optional dataset operation, with generic fallback for VOL connectors that don't implement operation Refactor all the 'H5VL_*_optional' callbacks to move the type of operation out of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Update h5debug to retrieve file pointer through VOL framework
| * Cherry pick of 0225e6d5969Quincey Koziol2020-01-041-3/+3
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* | Fix compile statement orderAllen Byrne2019-12-203-4/+5
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* | HDFFV-10976,-10980 h5dump, h5ls, h5diff use new ref APIsAllen Byrne2019-12-2015-428/+825
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* Revert and move declarationAllen Byrne2019-12-131-3/+5
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* Correct compile and test Windows errorsAllen Byrne2019-12-131-5/+4
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* Change defines to not conflict with windowsAllen Byrne2019-12-111-14/+14
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* HDFFV-10876 Merge from developAllen Byrne2019-12-0917-1175/+1747
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* Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-093-8/+1
| | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* Merged HDFFV-10929_2GB_testing to hdf5_1_12Richard Warren2019-12-063-1/+8
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* Fix reference type comparison in h5dumpJerome Soumagne2019-10-081-1/+5
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* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-083-15/+15
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* More whitespace changesAllen Byrne2019-10-031-46/+5
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* Whitespace and macro semi-colonAllen Byrne2019-10-022-62/+62
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* Renamed get/set_time() calls in the tools library to avoid nameDana Robinson2019-09-192-7/+10
| | | | clash when building static parallel HDF5 w/ static linking to OpenMPI.
* HDFFV-10876 h5dump OPAQUE size should be optionalAllen Byrne2019-08-271-9/+17
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-202-12/+9
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* Add HD prefix to testsAllen Byrne2019-08-153-26/+26
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* Updated h5trav.c to emit output that doesn't require ddl changes for mapDana Robinson2019-08-131-3/+0
| | | | support.
* Added the map (H5M) APIDana Robinson2019-08-133-0/+6
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* Squashed commit of the following:Larry Knox2019-07-252-14/+513
| | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
* Merge branch 'develop' into feature/update_gcc_flagsQuincey Koziol2019-07-101-1/+1
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| * HDFFV-10581 fix locations for static pdb filesAllen Byrne2019-07-081-1/+1
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* | Updates to warnhist script, along with a few cleanups, and add some commentsQuincey Koziol2019-07-102-2/+2
| | | | | | | | to warning cleanups that are a bit obscure.
* | Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-033-5/+5
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-283-10/+10
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-212-7/+5
| | | | clean up warnings.
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