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* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* VFD plugins (#602)jhendersonHDF2021-09-291-3/+4
| | | | | | | | | | | | | | | | | * Implement support for loading of Virtual File Drivers as plugins Fix plugin caching for VOL connector and VFD plugins Fix plugin iteration to skip paths that can't be opened * Enable dynamic loading of VFDs with HDF5_DRIVER environment variable * Temporarily disable error reporting during H5F_open double file open * Default to using HDstat in h5_get_file_size for unknown VFDs * Use macros for some environment variables that HDF5 interprets * Update "null" and "ctl testing" VFDs
* Modified gcc/clang warning suppression macros to account for some warnings ↵Sean McBride2021-09-161-2/+2
| | | | | | | | | | | | | | | | | flags being supported by one compiler but not the other (#379) * Committing clang-format changes * Fixed GCC warning suppression pragmas to also work with clang H5_GCC_DIAG_ON remains gcc-only. Added a new H5_CLANG_DIAG_ON that's clang-only, but it's not used anywhere currently. Added a new H5_GCC_CLANG_DIAG_ON that works with both compilers, which afterall support mostly the same warnings. Changed almost all uses of H5_GCC_DIAG_ON to use H5_GCC_CLANG_DIAG_ON, with the exception of a couple, where they really were suppressing gcc-only warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update copyright headers with reproduction notice in 5 files (#993)Larry Knox2021-09-081-9/+9
| | | | | | | | | * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixes parallel issues from recent C99 changes (#809)Dana Robinson2021-06-301-1/+1
| | | | | | | * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros
* Update license url part2 (#333)Larry Knox2021-02-172-2/+2
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* develop revert source to clang-format version 11 (#293)Allen Byrne2021-01-291-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-3/+3
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Clang-format of source filesAllen Byrne2020-09-301-372/+396
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* Pre-format fixes for warnings as errorsAllen Byrne2020-09-291-0/+2
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* OESS-98 merge with clang-format changesAllen Byrne2020-09-251-1/+1
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* CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+7
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* Fix S3/HDFS testAllen Byrne2020-08-231-0/+4
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* Separated VFD and VOL parameters in tools.Dana Robinson2020-04-211-5/+4
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* Fixed problems with S3 and HDFS VFDs.Dana Robinson2020-04-171-1/+1
| | | | | | * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
* TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-0/+1
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* Add missing header includeAllen Byrne2020-04-031-0/+1
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* Minor renaming in the tools code.Dana Robinson2020-03-311-5/+5
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* Update Tools library to be better compatible with VOL connectorsJordan Henderson2020-03-171-7/+11
| | | | | | | | | | | | | | | | | | | | | Modify h5repack to integrate with VOL connectors Update tools library to accomodate VOL connectors Update logic in h5tools_fopen for VOL connectors Add command-line options to h5repack for specifying in/out VOL connectors Implement h5tools_set_vol_fapl Fix library shutdown issue Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme Avoid H5Ocopy in h5repack when using different VOL connectors Update h5tools_test_utils.c for ROS3 and HDFS integration
* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-1/+1
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* HDFFV-11001 need to qualify all by parallel or serial typesAllen Byrne2020-01-151-1/+1
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* HDFFV-11001 Add fine control over testingAllen Byrne2020-01-151-1/+3
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* Update tools hid_t declarations with H5I_INVALID_HIDAllen Byrne2020-01-131-3/+3
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* fix for statement declare of typeAllen Byrne2019-09-301-1/+2
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* use h5test.hAllen Byrne2019-09-051-33/+4
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* add test libraryAllen Byrne2019-09-051-2/+2
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* Correct name and add mingw to 32bit toolchainAllen Byrne2019-09-051-1/+1
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* Fix build for tools library testAllen Byrne2019-09-052-12/+9
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* Untangle #ifdef mess in ROS3 code.Dana Robinson2019-08-201-18/+18
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* Add HD prefix to testsAllen Byrne2019-08-151-61/+60
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* Modify CMakeLists.txt file for renamed h5tools_test_utils files.Larry Knox2019-07-261-1/+1
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* Add HD to string functions.Larry Knox2019-07-262-14/+13
| | | | | | Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
* Squashed commit of the following:Larry Knox2019-07-254-0/+1400
Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
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