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* [svn-r25298] run reconfigure.Mohamad Chaarawi2014-06-161-0/+1
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* [svn-r25280] merge from latest VOL/trunk branch.Mohamad Chaarawi2014-06-134-605/+604
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| * [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-141-2/+2
| | | | | | | | Tested: local linux
| * [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-251-1/+0
| | | | | | | | | | | | | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
| * [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-252-601/+601
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| * [svn-r25043] Correct CPPFLAGS value.Allen Byrne2014-04-141-1/+1
| | | | | | | | Correct test DEPENDS format.
* | [svn-r25272] reconfigureMohamad Chaarawi2014-06-121-0/+1
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* | [svn-r24942] merge from VOL branch.Mohamad Chaarawi2014-04-017-171/+545
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| * [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-311-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
| * [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-312-78/+451
| | | | | | | | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
| * [svn-r24864] Description:Quincey Koziol2014-03-211-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
| * [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-181-1/+1
| | | | | | | | | | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
| * [svn-r24803] Description:Quincey Koziol2014-03-161-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
| * [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-131-1/+1
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| * [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-112-29/+29
| | | | | | | | KitWare recommendations: Change CMake commands to lower case.
| * [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-112-56/+56
| | | | | | | | | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
| * [svn-r24726] Description:Quincey Koziol2014-02-201-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* | [svn-r24884] another update to configure.Mohamad Chaarawi2014-03-241-1/+0
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* | [svn-r24880] add iod corrupt tool configure argumentMohamad Chaarawi2014-03-241-0/+2
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* | [svn-r24823] add --with-iodp for building old iod tarball for daos_pMohamad Chaarawi2014-03-181-0/+1
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* | [svn-r24793] Add indexing server implementation.Mohamad Chaarawi2014-03-131-0/+1
| | | | | | | | | | add indexing configure flag. add indexing files to Makefile.am
* | [svn-r24778] run reconfigure with new configure.ac changes.Mohamad Chaarawi2014-03-101-1/+1
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* | [svn-r24707] merge from VOL branch.Mohamad Chaarawi2014-02-131-1/+1
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| * [svn-r24666] Fix test folder deletion issueAllen Byrne2014-01-301-1/+1
| | | | | | | | Tested: local linux autotools
* | [svn-r24665] more IOD integrity integration.Mohamad Chaarawi2014-01-301-0/+2
| | | | | | | | add pkgconfig option for Mchecksum
* | [svn-r24594] Merge from VOL branch.Mohamad Chaarawi2013-12-263-7/+23
|\ \ | |/ | | | | Update plist encode/decode pre-generated files for newly added properties.
| * [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-011-0/+16
| | | | | | | | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
| * [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-312-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* | [svn-r24530] Fix autotools to find/include numpy headersJerome Soumagne2013-12-111-0/+4
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* | [svn-r24493] Include ax_python_devel.m4 / add enable-python optionJerome Soumagne2013-12-031-1/+9
| | | | | | | | Add H5AS module to makefile rules
* | [svn-r24405] - Edit configure magic to pick up IOD, MDHIM, PBL, PLFS, and ↵Mohamad Chaarawi2013-11-051-0/+2
| | | | | | | | | | | | DAOS_POSIX. - fix some warnings detected on Ostrich
* | [svn-r24303] update from VOL branch that has been updated with trunk.Mohamad Chaarawi2013-10-161-0/+1
|\ \ | |/ | | | | resolve conflicts, etc..
| * [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-241-0/+1
| | | | | | | | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* | [svn-r24090] Merging r24045 through r24089 from VOL branchMohamad Chaarawi2013-08-301-4/+6
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| * [svn-r24077] Updated -help output for compile scripts for changing default ↵Larry Knox2013-08-271-4/+6
| | | | | | | | | | | | from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static). Tested with h5committest on jam, koala, ostrich and platypus.
* | [svn-r24045] Merging r23841 through r24044 from VOL branch.Mohamad Chaarawi2013-08-214-286/+288
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| * [svn-r24029] Move TESTS to seperate file to allow easier editing by all ↵Allen Byrne2013-08-192-271/+273
| | | | | | | | | | | | developers. Tested: local linux
| * [svn-r24020] Description:Quincey Koziol2013-08-171-14/+14
| | | | | | | | | | | | | | | | Clean up compiler warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
| * [svn-r24011] Description:Quincey Koziol2013-08-151-1/+1
| | | | | | | | | | | | | | | | Clean up a few warnings Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* | [svn-r23837] merge from VOL branch and add new callbacksMohamad Chaarawi2013-06-274-45/+75
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| * \ [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-0/+5
| |\ \ | | |/ | | | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| | * [svn-r23745] HDFFV-8461: Add Windows /MT supportAllen Byrne2013-06-101-0/+5
| | | | | | | | | | | | This adds the UserMacros.cmake support needed.
| * | [svn-r23694] merge from trunkMohamad Chaarawi2013-05-103-45/+70
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| | * [svn-r23572] Removed inappropriate executable properties from a few files. ↵Dana Robinson2013-04-101-0/+0
| | | | | | | | | | | | | | | | | | | | | | | | These are often added by Windows text editors. Tested on: jam (just tested to make sure it builds - no code changes)
| | * [svn-r23555] Bug fix: HDFFV-8358Albert Cheng2013-04-051-54/+35
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The previous change set exec_prefix, libdir and includedir to actual values. That removed the option for user to hand edit just the first prefix=... to make "everything" to work. Changed h5redeploy to do this by default: ## Installation directories: ## ## prefix architecture-independent files. ## ## exec_prefix architecture-dependent files, default is <prefix>. ## ## libdir libraries, default is <exec_prefix>/lib. ## ## includedir header files, default is <prefix/include>. ## ############################################################################ This allows users to just change the first line of prefix=<...> and the effect will change libdir and includedir too. This was also try to accommodate the -prefix option of h5XX. Unfortunately, after changing h5redeploy, I found out the h5XX code to support -prefix actually does not provide the stated efffect. This will be fixed in the release. Tested: h5committested plus hand test.
| | * [svn-r23527] Revised usage to reflect change to use -shlib as default when ↵Larry Knox2013-04-021-2/+3
| | | | | | | | | | | | | | | | | | no static libraries were built. No test - text only revision of compile scripts.
| | * [svn-r23497] Bug fix: HDFFV-8358Albert Cheng2013-03-301-7/+64
| | | | | | | | | | | | | | | | | | | | | | | | Change h5redeploy to change all 4 lines, prefix=..., exec_prefix=..., libdir=..., and includedir=... This way, it reset all 4 lines. Should work for both version of h5cc created by configure or by rpm. Tested: hand tested in jam.
* | | [svn-r23767] Update autoconf files after running reconfigure on jamJerome Soumagne2013-06-131-11/+23
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* | | [svn-r23583] update the encoding/decoding part of the IOD pluginMohamad Chaarawi2013-04-121-1/+1
| | | | | | | | | | | | | | | | | | | | | - complete overhaul to use FS proc macros - remove dead code Rename FS routines to HG and update configure magic and makefiles Many bug fixes
* | | [svn-r23457] add --enable-eff to configure that defaults to noMohamad Chaarawi2013-03-261-0/+1
| | | | | | | | | | | | | | | | | | | | | add HAVE_EFF build flag to indicate whether the IOD plugin should be compiled or not add an AM conditional to indicate whether the EFF test exampels should be compiled or not tested on jam
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