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* [svn-r9930] James Laird2005-02-031-1/+1
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9928] Purpose:Quincey Koziol2005-02-032-3/+35
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9920] Purpose:James Laird2005-02-021-2/+3
| | | | | | | | | | | | | | | | | | | Bug fix Description: Found the permanant fix to automake/CVS dependency problem Solution: Added AM_MAINTAINER_MODE macro to configure.in. Now automake will never try to regenerate Makefiles, Makefiles.in, configure, H5config.h, etc. when they are out of date, nor will it print any warnings. Developers should be very very careful to use reconfigure script, and can add --enable-maintainer-mode flag to configure on heping to regenerate these files correctly. Platforms tested: heping sleipnir copper
* [svn-r9915] Purpose:James Laird2005-02-021-6/+6
| | | | | | | | | | | | | | | Bug fix Description: Configuration files' timestamps were incorrect. Solution: Update Makefiles.in. Also added correct paths to autotools on heping, so heping build should be able to re-generate configuration files even if they are still broken. Platforms tested: sleipnir
* [svn-r9912] Purpose:James Laird2005-02-011-87/+8
| | | | | | | | | | | | | | | | | Bug fix Description: Dependencies between configure files (aclocal, configure.in, configure, Makefiles.am and .in) are still causing Makefiles to try to run autotools during build. Solution: Committed all Makefiles.in to update their timestamps. As a temporary measure, forcibly prevented automake from running autotools during build by redefining the variables it uses. Platforms tested: sleipnir (No changes to Makefile content)
* [svn-r9907] Purpose:James Laird2005-02-011-0/+1
| | | | | | | | | | | | | Bug fix Description: Different compilers use different flags to include Fortran module files Solution: Changed boilerplate to use configure variable rather than hardcoded -M flag. Platforms tested: sleipnir, sol, copper
* [svn-r9902] Purpose:James Laird2005-02-013-215/+816
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9778] Purpose:Quincey Koziol2005-01-081-1/+1
| | | | | | | | | | | | | | | Remove feature Description: Retire threaded, balanced binary tree code from HDF5 use. Requiescat in pace... Also, regenerate dependencies files. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require full h5committesting (the code is already disconnected from everything except its tests)
* [svn-r9727] Purpose:Quincey Koziol2004-12-293-6/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9634] Purpose:Pedro Vicente Nunes2004-12-071-1/+8
| | | | | | | | | | | | | | bug fix Description: added a condition that checks if the hl library is enabled to add it to the list of linking libraries Solution: Platforms tested: linux Misc. update:
* [svn-r9628] Purpose:Pedro Vicente Nunes2004-12-071-3/+6
| | | | | | | | | | | | | | modified h5cc to link with the high level library (libhdf5_hl) Description: added libhdf5_hl.a to the list of libarries to link with Solution: Platforms tested: linux Misc. update:
* [svn-r8983] Purpose:Quincey Koziol2004-08-021-129/+132
| | | | | | | | | | | | Update dependencies Description: Update dependencies after config/depend1.in bugfix Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8618] Purpose:Quincey Koziol2004-06-051-13/+19
| | | | Fix makefiles, dependencies & manifest after source file rename.
* [svn-r8614] Purpose:Quincey Koziol2004-06-051-1/+2
| | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest
* [svn-r8495] Purpose:Quincey Koziol2004-05-081-125/+123
| | | | | | | | | | | | | | Bug fixes Description: Updated dependencies Fixed error with C++ compiler builds of main library Added H5Pset_data_transform to MPE info Platforms tested: FreeBSD 4.9 (sleipnir)
* [svn-r8163] Purpose:Quincey Koziol2004-02-071-0/+12
| | | | | | | | | | | | | Bug fix Description: Add ifdef around most of this file, to protect it from the Intel 7.1 C compiler which seems to have bugs in its -MG flag for creating dependency information. Platforms tested: Linux IA64 (titan) too obscure to require testing on other platforms
* [svn-r8128] Purpose:Quincey Koziol2004-01-311-6/+8
| | | | Update dependencies after restructuring of MPI stuff
* [svn-r8043] Purpose:Albert Cheng2004-01-081-0/+16
| | | | | | | | | | | | | Feature Description: Added option -showconfig which Shows the HDF5 library configuration summary Platforms tested: No h5committest test which does not test these tools. Tested in eirene by hand. Misc. update:
* [svn-r7816] Purpose:Bill Wendling2003-11-041-1/+1
| | | | | | | | | | | | | | | | | | Improvement Description: If the library is built in parallel mode, then name the "h5cc" and "h5fc" programs "h5pcc" and "h5pfc" resp. This saves the user from worrying about mixing serial and parallel builds of the library and having to specify the pathnames and so-forth. Platforms tested: Linux (w/ parallel & Fortran) Modi4 (w/ parallel & Fortran) Sol (Serial & Fortran & C++) Misc. update: Updated release/docs/RELEASE
* [svn-r7809] Purpose:Albert Cheng2003-11-031-1/+1
| | | | | | | | | | | | | | | | bug fix. Description: It sometimes complained of wrong number of argument to test. This happened when more than 1 tool are redeployed. The problem is due to an unquoted variable expanded into multiple strings, confusing the test command. Fixed by putting quotes around it. Platforms tested: only tested in eirene since it is trivial. Misc. update:
* [svn-r7779] Purpose:Bill Wendling2003-10-281-38/+0
| | | | | | | Regenerated Details: Regenerated because of changes to h5diff and tools library
* [svn-r7714] Elena Pourmal2003-10-232-157/+2
| | | | | | | | | | | | | Purpose: Maintenance Description: h5createU8 utility is an old h5import utility; removed Solution: Platforms tested: arabica Misc. update:
* [svn-r7626] Purpose:Quincey Koziol2003-10-141-4/+7
| | | | | | | | Update dependencies and tracing information Platforms tested: Linux 2.4 (verbena) w/FORTRAN too minor for h5committest
* [svn-r7361] Description:Albert Cheng2003-08-141-1/+1
| | | | | | | | | | | | Updated the copyright notice--mostly by rearranging some text to make them consistent. Solution: Platforms tested: "h5committested"--sol is down, so, no SUn test. Misc. update:
* [svn-r7352] Purpose:Quincey Koziol2003-08-131-4/+7
| | | | | | | Updated dependencies Platforms tested: h5committested
* [svn-r7191] Purpose:Quincey Koziol2003-07-092-21/+21
| | | | | | | | | | Code cleanup Description: Track new "debug" modules for library. Platforms tested: h5committested
* [svn-r7123] Purpose:Bill Wendling2003-06-301-1/+0
| | | | | | | | | | | | | | | | | Bug Fix Description: The SUBDIRS macro is now defined as "" in the config/commence.in file. We shouldn't have definitions of this macro before the inclusion of config/commence.in. Solution: Placed all definitions of SUBDIRS after config/commence.in inclusion. Platforms tested: Modi4 (Small fix yet again). Misc. update:
* [svn-r7010] Purpose:Albert Cheng2003-06-091-2/+5
| | | | | | | | | | | | | | | Bug fix Description: h5cc was removed prematurely in "make clean". Moved it to be removed in "make distclean" only. Solution: Platforms tested: COpper. Misc. update:
* [svn-r6984] Purpose:Bill Wendling2003-06-051-1/+1
| | | | | | | | | | | | | | Update Description: Added h5c++ script to h5redeploy Platforms tested: Verbena (Fortran & C++) Arabica (Fortran & C++) Modi4 (Fortran & Parallel) Misc. update:
* [svn-r6962] Purpose:Quincey Koziol2003-06-041-13/+13
| | | | | | | | | | Code cleanup Description: Update dependencies and tracing information Platforms tested: h5committested
* [svn-r6959] Bill Wendling2003-06-041-1/+8
| | | | | | | | | | | | | | | | | Purpose: Bug Fix Description: The flags for the linker on MacOS X were invalid. Solution: If this is a darwin platform (MacOS X), then don't specify the runtime linker flags. Platforms tested: MacOSX (since it only affects it...) Misc. update:
* [svn-r6926] Purpose:Bill Wendling2003-05-291-34/+33
| | | | | | | | | | | | | | | | | | | | Bug Fix Description: The order the libraries are included in the compilation line is very important. Solution: Need to specify the libraries in the order that they are given. If we're building the application staticly, then use the static HDF5 library. Platforms tested: Modi4 Verbena Arabica Misc. update:
* [svn-r6922] Purpose:Albert Cheng2003-05-291-4/+3
| | | | | | | | | | | | | bug fix Description: Not all echo commands honors the '-n' option. In those cases, the output look weired though recognizable. Solution: Eliminated the use of -n option. A better fix would be having configure to set the proper use of the echo command. Platforms tested: only on sasn100 (a sun frontend of Janus). No committest since this is just a simple shell script change.
* [svn-r6919] Purpose:Bill Wendling2003-05-281-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Two things: - static libraries may depend upon the HDF5 library. We should put them before the HDF5 library on the commandline instead of afterwards to avoid conflict. - the CFLAGS weren't being used during linking. This was causing problems on Arabica where the flags are important to distinguish between building a 32-bit and 64-bit application. Solution: - Added logic so that it catches the static libraries and puts them before the hdf5 library on the command line. WARNING: This may not work in all situations...but it should be okay for the good majority. - added the CFLAGS macro to the commandline... Platforms tested: LInux (Colonelk) Arabica Modi4 (Parallel) (Small changes so doesn't need full h5committesting...) Misc. update:
* [svn-r6883] Purpose:Bill Wendling2003-05-151-12/+33
| | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Lots of things. Mostly, multiple libraries declared on the command line bothered some compilers. Then the order of the libraries is important. Then if you are building static, you don't want an "-lhdf5" flag in your compile line. Solution: Various hacks to remove redundant libraries from the compile line and to keep the order of them and to replace -lhdf5 with the .a file when building static. Platforms tested: Modi4 (Fortran & Parallel) Verbena (Fortran & C++) Arabica (Fortran) Misc. update:
* [svn-r6871] Purpose:Bill Wendling2003-05-131-8/+4
| | | | | | | | | | | | | | | | Fix Description: The way I was checking for -lfoo flags wasn't rigorous enough. Solution: Use a "grep" instead of the "case" statement. Also check that the full "-lfoo" flag is matched instead of just part of it. Platforms tested: Linux (small fix) Misc. update:
* [svn-r6858] Purpose:Bill Wendling2003-05-131-2/+14
| | | | | | | | | | | | | | | | | | Bug Fix Description: Some compilers aren't happy if you specify the same library multiple times when linking. This caused HDF5 Lite to crash during tests on Kelgia Solution: Modified the script so that the shared libraries are specified only once for the commandline. Platforms tested: Kelgia (small fix). Misc. update:
* [svn-r6856] Purpose:Bill Wendling2003-05-131-1/+1
| | | | | | | | | | | | | | | | | | | Bug Fix Description: When doing a "configure" using the h5cc script as the compiler, it would fail to accept the "-E" flag as running the preprocessor. The problem was that it was trying to link the file afterwards. Of course, the file wouldn't be there, so it would fail. Solution: Changed it so that if the -E flag is used, then we don't try to link (this is how it's done in mpicc...I must have copied it wrongly). Platforms tested: Linux & Kelgia (small change not needing full testing) Misc. update:
* [svn-r6736] Purpose:Albert Cheng2003-04-231-8/+16
| | | | | | | | | | | | | | | update Description: Added h5fc to the h5tools list. Added feature that it will udpate tools that are present. (Would still abort if no tools found at all.) Platforms tested: Did not h5committest since it does not test this tool at all. Did various test in eirene by hand. Misc. update:
* [svn-r6621] Purpose:Bill Wendling2003-04-102-5/+25
| | | | | | | | | | | | | | Update Description: Updated the copyright statements that I forgot... Platforms tested: Modi4 (Fortran & Parallel) Arabica (Fortran) Burrwhite (Fortran & C++) Misc. update:
* [svn-r6603] Purpose:Quincey Koziol2003-04-091-2/+2
| | | | | | | | | | | | | | | | | Code cleanup Description: Update dependencies. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6584] Elena Pourmal2003-04-032-15/+148
| | | | | | | | | | | | | | | | Purpose: Maintenance Description: There was an old h5import (h5import.c) tool in the misc directory. The tool created 8-bit integer datasets , it was never tested and/or supported. Solution: We decided to rename old h5import.c to h5createU8.c. The new name reflects what actually old tool does. New executable h5createU8 is built in the misc directory. h5import.c file (old one) is still in the misc directory, but h5import executable is not built. (Sorry if I confused you!) Platforms tested: vebena, arabica, modi4 were tested Misc. update:
* [svn-r6576] Purpose:Quincey Koziol2003-04-031-3/+39
| | | | | | | | | | | | | | Cleanup Description: Update dependencies. Solution: Platforms tested: Linux 2.4 (eirene) Misc. update:
* [svn-r6545] Purpose:Bill Wendling2003-03-316-19/+75
| | | | | | | | | | | | Update Description: Updated copyright Platforms tested: LInux (Comment change only) Misc. update:
* [svn-r6519] Purpose:Quincey Koziol2003-03-221-5/+20
| | | | | | | | | | | | | Bug fix/code cleanup/new feature Description: Fix h5debug to work correctly again, with all the changes over the past few months. Improved and cleaned up debugging output available in h5debug. Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6459] Purpose:Albert Cheng2003-03-041-2/+2
| | | | | | Minor purpose correction and updated Copyright notice to include 2003 Platforms tested: None tested. All changes are comments.
* [svn-r6457] Purpose:Albert Cheng2003-03-041-7/+15
| | | | | | | | | | | | new feature Description: Added a force mode (-force) which turns off prompting, just do it. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? no [If no, why not?] It is just a shell script. Tested it in eirene. Misc. update: Will check in the updated RELEASE and document files.
* [svn-r6412] Purpose:Quincey Koziol2003-02-171-3/+6
| | | | | | | | | | Code cleanup Description: Update dependencies and clean up a few warnings. Platforms tested: Linux 2.2 (eirene) w/parallel
* [svn-r6411] Purpose:Quincey Koziol2003-02-171-1/+2
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up miscellaneous warnings which have crept into the code. Fix "_POSIX_C_SOURCE not defined" warning on FreeBSD. Adjust gcc compiler flags to be more concise for production mode. Refactor the H5O code so that there is a stronger boundary between code in the H5O package and code in the library which just calls H5O routines. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel and gcc 2.95.4 & gcc 3.2.2 Misc. update: Update MANIFEST if you add or remove any file.
* [svn-r6387] Purpose:Quincey Koziol2003-02-101-9/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Metadata cache in parallel I/O can cause hangs in applications which perform independent I/O on chunked datasets, because the metadata cache can attempt to flush out dirty metadata from only a single process, instead of collectively from all processes. Solution: Pass a dataset transfer property list down from every API function which could possibly trigger metadata I/O. Then, split the metadata cache into two sets of entries to allow dirty metadata to be set aside when a hash table collision occurs during independent I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Updated release_docs/RELEASE
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