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* VFD SWMR: sync with develop (#1825)Dana Robinson2022-06-241-6/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * bin directory sync * doxygen changes * C++ sync with develop * Fortran sync with develop * Sync various docs with develop * Java sync with develop * More doxygen sync with develop * tools sync with develop * h5test.h testing macros get enclosed in do..while loops (#1721) * Minor examples normalization with develop * hl sync with develop * sprintf to snprintf (#1815) * Misc sync w/ develop * Brings some selection I/O bits over from develop * Brings over some const fixes from develop * Brings over more const bits from develop * Minor bits missed in early syncs * Brings over rest of selection I/O * Sync of mirror VFD changes w/ develop * Committing clang-format changes * Adds missing testpar file Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: Normalization with develop (#1506)Dana Robinson2022-03-231-37/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brought over plugin and test script changes * Removes remaining register keywords (#1481) * Fixed warnings in the aux process code * Minor fixes from develop * Minor changes from develop, fixed format warnings * Formatted source * Added HD prefix to timespec_get * Cleanup in new files * Removes the MANIFEST file and unused release files (#1497) * Removes the MANIFEST file and unused release files * Updated tar command * checkposix corrections * More checkposix fixes * Ripped out unused instrumentation functionality * Brought over cache tagging changes from develop * Changes to tagged metadata expulsion iteration * Fixed typo * Brought over H5O__free() changes from develop * Brings (unused) parallel page buffer test in line with develop * Moved the functionality in supervise.subr to test_vfd_swmr.sh * Tools VFD parameter updates * Committing clang-format changes * H5F VFD SWMR refactoring * Committing clang-format changes * Misc changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: normalization with develop (#1472)Dana Robinson2022-03-063-38/+52
| | | Much normalization with develop. Still needs tools changes wrt VFD plugins.
* VFD SWMR: Normalization with develop (#1270)Dana Robinson2021-12-081-3/+0
| | | Brings many October-November changes from develop
* VFD SWMR: Normalization with develop (#1078)Dana Robinson2021-10-063-91/+46
| | | Brings many changes from develop, particularly VOL changes for async
* VFD SWMR: Sync with develop (#811)Dana Robinson2021-06-301-170/+170
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Normalization with develop * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks for (v)snprintf, which are C99 (#772) * Update missing release note info. (#776) * Replaces the H5_OVERRIDE macro with override (#773) The macro is no longer necessary now that we require C++11. * Cleans up some POSIX header bits in H5private.h (#783) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Removes C++ dependency on H5private.h (#774) * Removes C++ dependency on H5private.h Most C API calls have been removed, aside from a few uses of free, where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros were also replaced with (void) statements. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Release Note (#784) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Fix tools test (#794) * Removes ancient Autotools cruft (#790) * Reorganization of C and POSIX headers in H5public.h & H5private.h (#793) * Reorganization of C and POSIX headers in H5public.h & H5private.h Consolidated and removed duplicates * It turns out Windows has sys/types.h Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removes checks for signal and set/longjmp, which are C89 (#798) Also removes checks for setjmp.h and stddef.h * Assume frexpl/f and fabsl/f, which are C99 (#799) * Assume the library has C99 types in C++ type code (#806) * Assume the library has C99 types in C++ type code * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes obsolete equivalents of C99's __func__ (#800) * Cleans up POSIX/C bits in H5private.h (#804) * Cleans up POSIX/C bits in H5private.h * Assume difftime exists (C89) * Reorg AC_CHECK_HEADERS so headers are in alphabetical order * Split off networking-related AC_CHECK_HEADERS * Remove unused UNAME_CYGWIN from configure.ac * Remove checks for unused sys/timeb.h * Tidying pass over H5private.h HD prefix macros * Tidy H5win32defs.h * Add HD prefix to various scanf calls * Committing clang-format changes * Fixes to the alarm(2) code used in the tests to make Windows happy Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Brings the tools getopt(3) replacement into the main library (#803) * Moves get_option from the tools library to the C library * Adds H5 prefix to get_option call and variables * Renames the H5_get_option long options struct and enum * Removes type guesses when C99 types are missing (#807) * Assume C99 types exist in H5detect.c (#808) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Fix typo * Fixes parallel issues from recent C99 changes (#809) * Fixes parallel issues from recent C99 changes * Adds MPE FUNC --> __func__ changes missed in earlier PRs * Even more missed FUNC --> __func__ macros * Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810) Mostly from CMake Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Much normalization with develop (#701)Dana Robinson2021-05-282-74/+74
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Brings much of the printf changes over from developDana Robinson2021-05-066-18/+18
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* Brings many CMake changes from developDana Robinson2021-04-081-2/+23
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* Updates license url and history docsDana Robinson2021-03-259-9/+9
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-258-2985/+3272
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* Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-045-148/+135
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| * Tools refactorAllen Byrne2020-07-155-148/+135
| | | | | | | | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
| * Fix memory error in h5dump xml 'escape the string' routineJordan Henderson2020-04-271-4/+2
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| * Further updates to the tools warnings fixes from code review.Dana Robinson2020-04-271-3/+7
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| * Updates to tools warning PR from code review.Dana Robinson2020-04-261-8/+4
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| * Fixes for warnings in the tools code.Dana Robinson2020-04-251-1/+5
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| * Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.Dana Robinson2020-04-212-46/+83
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| * Separated VFD and VOL parameters in tools.Dana Robinson2020-04-211-9/+7
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| * Fixed problems with S3 and HDFS VFDs.Dana Robinson2020-04-171-2/+2
| | | | | | | | | | | | * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
| * Added support for passing connector info strings via the commandDana Robinson2020-04-091-3/+3
| | | | | | | | line to the tools internals.
| * Fix for passthrough VOL not passing tools tests due to incorrectDana Robinson2020-04-081-6/+2
| | | | | | | | optional callback queries.
| * Added checks for native optional call support in some of the tools.Dana Robinson2020-04-021-0/+16
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| * Minor renaming in the tools code.Dana Robinson2020-03-311-7/+7
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| * Minor renaming in h5dump (addr --> token)Dana Robinson2020-03-282-30/+30
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| * Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to developJordan Henderson2020-03-271-136/+62
| |\ | | | | | | | | | | | | | | | | | | * commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172': A few small tweaks to the tools from review Replace usage of some standard library functions with HD- versions Update Tools library to be better compatible with VOL connectors
| | * A few small tweaks to the tools from reviewJordan Henderson2020-03-271-2/+2
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| | * Update Tools library to be better compatible with VOL connectorsJordan Henderson2020-03-171-136/+62
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Modify h5repack to integrate with VOL connectors Update tools library to accomodate VOL connectors Update logic in h5tools_fopen for VOL connectors Add command-line options to h5repack for specifying in/out VOL connectors Implement h5tools_set_vol_fapl Fix library shutdown issue Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme Avoid H5Ocopy in h5repack when using different VOL connectors Update h5tools_test_utils.c for ROS3 and HDFS integration
| * | Add extensive warnings to tools executablesAllen Byrne2020-03-251-0/+2
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| * TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-211-1/+1
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| * merge and fixkmu2020-01-213-102/+140
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| | * Squashed commit of the token_refactoring branch:Dana Robinson2020-01-163-102/+140
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| * | merge and fix conflictkmu2020-01-193-22/+17
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| | * Update tools hid_t declarations with H5I_INVALID_HIDAllen Byrne2020-01-133-17/+17
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| * Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-041-1/+1
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| * Update h5ls help and rework dump_mem routines for attrsAllen Byrne2019-12-042-36/+8
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| * Comment correctionAllen Byrne2019-11-211-1/+1
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| * HDFFV-10876 Update h5dump and h5ls for new ref api.Allen Byrne2019-11-073-177/+51
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| * Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-081-2/+2
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| * More whitespace changesAllen Byrne2019-10-031-165/+52
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| * HDFFV-10919 merge synchingAllen Byrne2019-10-021-2/+1
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| * HDFFV-10901 add missing config optionsAllen Byrne2019-09-131-8/+4
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| * HDFFV-10876 h5dump OPAQUE size should be optionalAllen Byrne2019-08-271-8/+0
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| * Add HD prefix to testsAllen Byrne2019-08-152-7/+7
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| * Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-141-0/+4
| | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| * Added the map (H5M) APIDana Robinson2019-08-132-0/+4
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| * Merge reconciliation and VFD test fixesAllen Byrne2019-08-041-1/+0
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| * Squashed commit of the following:Larry Knox2019-07-251-122/+208
| | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| * Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-2/+2
| | | | | | | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
| * HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-181-12/+14
| | | | | | | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
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