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* Warning fixes in tools and h5test.cDana Robinson2020-08-061-1/+4
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* Minor normalizations with 1.12 branchDana Robinson2020-08-012-7/+7
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* Warnings reduction in toolsAllen Byrne2020-07-302-4/+2
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* Tools refactorAllen Byrne2020-07-1516-724/+571
| | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
* Fix for HDFFV-10961: add description to usage for --increment option.vchoi2020-06-111-2/+7
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* Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5 ↵Jordan Henderson2020-04-271-179/+224
|\ | | | | | | into develop
| * Merge pull request #2540 in HDFFV/hdf5 from extend_h5debug to developQuincey Koziol2020-04-271-179/+224
| |\ | | | | | | | | | | | | | | | | | | * commit '3f3363177d5cc1efc8fcfc70e1feed7a293da2d4': Range check # of 'extra' command-line parameters against array size. Refactor "extra" command-line arguments, and clean up code so the tool doesn't assert when exiting. Extend h5debug to support 3-D datasets for chunks.
| | * Range check # of 'extra' command-line parameters against array size.Quincey Koziol2020-04-261-1/+9
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| | * Refactor "extra" command-line arguments, and clean up code so the tool doesn'tQuincey Koziol2020-04-261-183/+216
| | | | | | | | | | | | assert when exiting.
| | * Extend h5debug to support 3-D datasets for chunks.Quincey Koziol2020-04-251-3/+7
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* | | Fix memory error in h5dump xml 'escape the string' routineJordan Henderson2020-04-271-4/+2
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* | Further updates to the tools warnings fixes from code review.Dana Robinson2020-04-271-3/+7
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* | Updates to tools warning PR from code review.Dana Robinson2020-04-261-8/+4
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* | Fixes for warnings in the tools code.Dana Robinson2020-04-253-11/+15
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* Merge pull request #2532 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-236-156/+318
|\ | | | | | | | | | | | | | | to develop * commit '785bd0975ba13c3033820d0fc809da963fcd54ca': Fixed h5diff command-line parameters to use 1 and 2 instead of src and dst. Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.
| * Fixed h5diff command-line parameters to use 1 and 2 instead of srcDana Robinson2020-04-221-43/+43
| | | | | | | | and dst.
| * Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.Dana Robinson2020-04-216-143/+305
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* | Merge pull request #2530 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-214-31/+25
|\ \ | |/ | | | | | | | | | | to develop * commit 'c6097935d5be4c3750b9bf9167783ad28158905b': Separated VFD and VOL parameters in tools.
| * Separated VFD and VOL parameters in tools.Dana Robinson2020-04-214-31/+25
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* | Trim trailing whitespaceQuincey Koziol2020-04-203-7/+7
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* Fixed problems with S3 and HDFS VFDs.Dana Robinson2020-04-173-6/+6
| | | | | | * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
* Update h5repack long arguments for id-->value changes.Dana Robinson2020-04-141-2/+2
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* Changed identifiers and command-line options from "id" to "value" in toolsDana Robinson2020-04-141-8/+8
| | | | code to be in agreement with H5VL API terminology.
* Added support for passing connector info strings via the commandDana Robinson2020-04-094-11/+11
| | | | line to the tools internals.
* Fix for passthrough VOL not passing tools tests due to incorrectDana Robinson2020-04-082-12/+3
| | | | optional callback queries.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-063-31/+59
|\ | | | | | | | | | | | | * commit '4830a1796441abbb5a4fbd2cff9a651f2a0d066e': Updated tools dump output when dataset offset is undefined. Added checks for native optional call support in some of the tools. Misc changes for h5dump VOL changes.
| * Merge branch 'develop' into tools_vol_updateDana Robinson2020-04-061-8/+8
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| * | Added checks for native optional call support in some of the tools.Dana Robinson2020-04-022-26/+54
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| * | Merge branch 'develop' into tools_vol_updateDana Robinson2020-04-024-37/+37
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| * \ \ Merge branch 'develop' into tools_vol_updateDana Robinson2020-03-311-0/+2
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| * \ \ \ Merge branch 'tools_vol_update' of ↵Dana Robinson2020-03-302-45/+52
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into tools_vol_update
| * | | | | Misc changes for h5dump VOL changes.Dana Robinson2020-03-302-6/+6
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* | | | | | TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-0/+2
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* | | | | Fixed unnecessary H5R casts in the tools that were raising warnings.Dana Robinson2020-04-021-8/+8
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* | | | Minor renaming in the tools code.Dana Robinson2020-03-314-37/+37
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* | | Merge pull request #2479 in HDFFV/hdf5 from ~GHEBER/hdf5:bugfix/HDFFV-11065 ↵Gerd Heber2020-03-301-0/+2
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | to develop * commit '2dfc047bc4aca7c13bccf44da97bff026cbbf5a6': Fix for HDFFV-11065.
| * | Fix for HDFFV-11065.Gerd Heber2020-03-291-0/+2
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* | Fix latent bug in h5repack options file readingJordan Henderson2020-03-292-45/+52
|/ | | | Add 'enable-error-stack' option to h5format_convert
* Minor renaming in h5dump (addr --> token)Dana Robinson2020-03-282-30/+30
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* Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to developJordan Henderson2020-03-2712-525/+449
|\ | | | | | | | | | | | | * commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172': A few small tweaks to the tools from review Replace usage of some standard library functions with HD- versions Update Tools library to be better compatible with VOL connectors
| * A few small tweaks to the tools from reviewJordan Henderson2020-03-273-6/+6
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| * Replace usage of some standard library functions with HD- versionsJordan Henderson2020-03-261-2/+2
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| * Update Tools library to be better compatible with VOL connectorsJordan Henderson2020-03-1712-525/+449
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Modify h5repack to integrate with VOL connectors Update tools library to accomodate VOL connectors Update logic in h5tools_fopen for VOL connectors Add command-line options to h5repack for specifying in/out VOL connectors Implement h5tools_set_vol_fapl Fix library shutdown issue Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme Avoid H5Ocopy in h5repack when using different VOL connectors Update h5tools_test_utils.c for ROS3 and HDFS integration
* | Add extensive warnings to tools executablesAllen Byrne2020-03-258-0/+22
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* Fix standalone linkAllen Byrne2020-02-251-3/+3
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-2111-11/+11
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* HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-02-071-1/+8
| | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-291-2/+2
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* Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-291-1/+1
|\ | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| * Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
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