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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-214-40/+17
| | | | clean up warnings.
* HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-1810-141/+242
| | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
* Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-142-227/+0
| | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
* Modified Makefile.ams for h5repack, h5watch and gif2h5 to allowLarry Knox2019-06-123-413/+1
| | | | | | | disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
* Invalid position of declaration fixed.Allen Byrne2019-01-251-1/+2
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* Fixed HDFFV-10586 and HDFFV-10588Binh-Minh Ribler2019-01-151-1/+2
| | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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* Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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* HDFFV-10578 and HDFFV-10676Binh-Minh Ribler2019-01-061-3/+4
| | | | | | | | | | | | | | | | | | Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error. In H5O__chunk_deserialize, replaced an assert with an if statement and reporting error, per Neil's recommendation HDFFV-10676 - CVE-2018-13873 Also in H5O__chunk_deserialize, added an assertion to detect out of bound ids
* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-141-19/+26
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* TRILAB-81 fix typoAllen Byrne2018-10-241-1/+1
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* TRILAB-82 fixed errors found in reviewAllen Byrne2018-10-242-63/+63
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* TRILAB-81 Output error if filename length is greater then 255Allen Byrne2018-10-191-0/+5
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* TRILAB-81 Coverity fixAllen Byrne2018-10-191-18/+21
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* TRILAB-81 coverity fixesAllen Byrne2018-10-174-11/+12
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* VOL FEATUREDana Robinson2018-10-104-38/+38
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* CMake changes for SKIPPED and flush testsAllen Byrne2018-09-241-1/+1
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* Develop normalization with vol_integration.Dana Robinson2018-09-193-95/+101
| | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* HD prefix and whitespaceAllen Byrne2018-08-283-198/+198
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* Add quotes to places where MPI_C_LIBRARIES are linked againstJordan Henderson2018-07-271-1/+1
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* Fix for HDFFV-10333:Vailin Choi2018-07-111-131/+159
| | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-2310-20/+20
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-0910-20/+20
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* | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-147-19/+18
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-1412-105/+81
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits) GGC requires attribute before function Correct COMPILE defs usage Add missing module_dir property Text cleanup Correct sentence punctuation. Add release note. Use set_property for MT flag Correct command usage Remove APPEND Fix typo Add missing test lib add missing folder to path Fix another command revert Missed a command revert Revert to old style for LINK_FLAGS gen expr not working LINK_FLAGS must be separate property sets Fix link flags syntax Revert refactor link flags refactor link flags to interface Refactor link flags ...
| * Text cleanupAllen Byrne2018-05-082-42/+18
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| * TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-2610-63/+63
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* | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-248-22/+23
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-2011-11/+11
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* TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-1711-56/+21
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* Cleanup API context function usage.Quincey Koziol2018-03-191-7/+12
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-1825-390/+335
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-03-121-16/+142
| |\ | | | | | | | | | | | | | | | | | | | | | develop * commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1': Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| | * Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-16/+142
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| * | Change CMake min to 3.10Allen Byrne2018-03-0911-11/+11
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| * Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-2711-11/+11
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| * HDFFV-10412 fix typoAllen Byrne2018-02-211-1/+1
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| * HDFFV-10412 moved check back into normal pathAllen Byrne2018-02-211-20/+20
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| * Fix indentationAllen Byrne2018-02-191-2/+2
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| * HDFFV-10384 Add opt arg to helpAllen Byrne2018-02-151-2/+2
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| * HDFFV-10384 Add optional arg to enable-error-stackAllen Byrne2018-02-145-29/+32
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| * Merge pull request #876 in HDFFV/hdf5 from ↵Vailin Choi2018-02-144-26/+67
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_hdf5_fork:bugfix/version_bounds to develop * commit 'b4294d8d3e5937527e9814f23d04df412ebbe770': Added comment for clarification about latest as 1.10. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Fixed typos Platforms tested: Linux/32 (jam) Additional tests Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test) Added gen_bounds Cleaned up per comments in PR# 876 Modifications made based on comments from pull request. Added gen_bounds.c Added gen_bounds.c Fix bounds check for the generation of cache image. Modify usage description for -j and -k options so that it is more informative. Modify h5repack usage so that it is more descriptive. Changes made based on code reviews. Further improvement Fixed comment. Adding data file generator Description: Added gen_bounds.c to generate the following files: - bounds_earliest_latest.h5 - bounds_earliest_v18.h5 - bounds_latest_latest.h5 - bounds_v18_latest.h5 - bounds_v18_v18.h5 for testing the version bounds fix in 1.8 and 1.6. Initial checkin for library version bounds Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| | * Modifications made based on comments from pull request.Vailin Choi2018-02-071-4/+4
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| | * Merge branch 'trunk_merge' into bugfix/version_boundsVailin Choi2018-01-282-209/+3
| | |\ | | | | | | | | | | | | Keep it up-to-date with develop.
| | * \ Merge branch 'develop' into bugfix/version_boundsVailin Choi2018-01-2312-32/+13
| | |\ \ | | | | | | | | | | | | | | | Keep the branch up-to-date.
| | * | | Modify usage description for -j and -k options so that it is more informative.Vailin Choi2018-01-181-2/+3
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| | * | | Modify h5repack usage so that it is more descriptive.Vailin Choi2018-01-161-5/+16
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| | * | | Merge branch develop into bugfix/version_boundsVailin Choi2018-01-1210-34/+34
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| | * \ \ \ (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-2513-283/+276
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| * | | | | | HDFFV-10345 spelling errorsAllen Byrne2018-02-051-2/+2
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