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* Sync with develop (#1863)feature/onion_vfdDana Robinson2022-07-097-43/+39
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* Enabling h5repack to support onion VFD (#1788)raylu-hdf2022-06-291-0/+28
| | | | | | | * Enable h5repack to support onion VFD. The input file can take options for onion VFD. But output file doesn't. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Onion VFD: sync with develop (#1747)Dana Robinson2022-05-063-5/+23
| | | Sync with develop
* Onion VFD: Cleans up warnings related to onion VFD stuff in tools code (#1733)Dana Robinson2022-05-063-39/+47
| | | | | | | | | * Cleans up warnings related to onion VFD stuff in tools code Also disables an h5dump test that has a missing file * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Onion VFD: Sync with develop. (#1732)Dana Robinson2022-05-061-4/+1
| | | | | | | * Sync with develop. h5dump is broken, so I can't test the tools. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Added the support to get the revision count for the onion file into the ↵raylu-hdf2022-05-051-15/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5dump. (#1726) * Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Added the support to get the revision count for the onion file into the h5dump. * Committing clang-format changes * Changed the function from H5FDget_onion_revision_count to H5FDonion_get_revision_count for better name. * Fixed compiler warnings. Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: Wei-keng Liao <wkliao@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Onion VFD: Misc cleanup (#1693)Dana Robinson2022-04-262-21/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426) * Do not conditionally compile code that uses a pointer dereference and assignment to copy a potentially unaligned variable to aligned automatic storage, or vice versa. Instead, always use naked `memcpy(3)`s. Disassembling the generated code reveals that the `memcpy(3)`s optimize (`-O3`) to a single `mov` instruction for x86_64, which is not strict about alignment. This change reduces the size of code and scripts by 143 lines, eases our way to cross-compilation, and avoids invoking undefined behavior. * Committing clang-format changes * Per discussion, use HD and add comments. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t (#1651) * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t * Committing clang-format changes * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Mirror vfd test fixes (#1629) * Use the FAPL that was created earlier in the test (and delete an unused variable). This allows 'make check-vfd' to pass with --enable-mirror-vfd. * Check for testing directory before creating, to avoid warning from bash. Clean out .libs directory before re-using it (after a failed test), to remove any files generated by libtool. * Committing clang-format changes * Increment error count on failed file open and skip tests for VFDs that need modified filenames. * Skip the mirror VFD for 'make check-vfd' - the mirror VFD requires networking configuration parameters and can't be provided for an automated test that is configured with an environment variable. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes HDF Group paths, adds shellcheck fixes (#1656) For more information: https://www.shellcheck.net/wiki/SC2086 -- Double quote to prevent globbing ... https://www.shellcheck.net/wiki/SC2230 -- which is non-standard. Use builti... https://www.shellcheck.net/wiki/SC2006 -- Use $(...) notation instead of le... * HDFFV-11306 Fixed (#1657) * HDFFV-11306, * Fixed it so both h5open_f and h5close_f can be called multiple times. * Fixed an issue with open objects remaining after h5close_f was called. * Added additional tests. * comments clean-up * Develop clang format java (#1653) * added HDFFV-11306 entry (#1662) * Adds the -q flag to all swmr test programs, quieting noisy output (#1665) * Adds paths-ignore to the Github pull request workflow (#1663) * Changes Github action `hdf5 dev CI` to `PR hdf5 dev CI` (#1666) So the PR action name is not the same as the one in main.yml * Replace H5detect's build-time detection of C99 integer properties with a (#1400) * Replace H5detect's build-time detection of C99 integer properties with a table-driven routine, `H5T__init_native_int()`, that is run at library initialization time. * Improve handling of copying of dynamic libraries and clean them up after (#1681) test finishes. * Warnings fixes (#1680) * Clean stack size warnings in sio_engine (#1687) * Fixes stack size warnings in tcoords.c (#1688) * Minor things noticed while bringing VFD SWMR in line with develop (#1691) * Removed dead code, weird formatting, and other badness * Fixed remaining stack size warnings in onion VFD * Committing clang-format changes Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Co-authored-by: Wei-keng Liao <wkliao@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: David Young <dyoung@hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Quincey Koziol <koziol@lbl.gov> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
* Changed the field name 'revision_id' of H5FD_onion_fapl_info_t to ↵raylu-hdf2022-04-162-7/+7
| | | | | | | | | 'revision_num' for better description (#1650) * Changed the field name 'revision_id' of H5FD_onion_fapl_info_t to 'revision_num' for better description. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Changed the options for the Onion VFD to use the generic VFD options in ↵raylu-hdf2022-04-153-15/+78
| | | | | | | | | h5diff and h5dump (#1643) * Changed the options for the Onion VFD to use the generic VFD options in h5diff and h5dump. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Merge remote-tracking branch 'canonical/develop' into feature/onion_vfdDana Robinson2022-04-0630-555/+716
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| * Move error-stack text to top of usage display (#1564)Allen Byrne2022-04-016-27/+48
| | | | | | | | | | | | | | | | | | * Move error-stack text to top of usage display * Add optional tag ti list * format changes * Revert incorrect change
| * spelling fixes (#1561)Scot Breitenfeld2022-03-312-2/+2
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| * Fixes for format string warnings raised by -Wformat=2/-Wformat-security (#1489)Dana Robinson2022-03-111-3/+3
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| * Removes remaining register keywords (#1481)Dana Robinson2022-03-104-57/+55
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| * Remove addition of non-standalone use of H5_ATTR_FORMAT (#1470)Allen Byrne2022-03-071-1/+1
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| * Sprinkle H5_ATTR_FORMAT over printf(3)-like functions in tools and fix ↵David Young2022-02-215-47/+44
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | issues (#1423) * Correct some conversion specifications. * Replace many "%lld" occurrences with "%" PRIuHSIZE except for a few instances where PRIdHSIZE was appropriate. Remove a couple of casts and use correct format strings, instead. * Copy values from a possibly unaligned buffer to aligned local variables instead of casting and dereferencing pointers into the buffer. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Make a buffer bigger: GCC 8.3.0 warned that a `snprintf` may be (#1403)David Young2022-02-111-1/+1
| | | | | | | | | | truncated because the recipient buffer was too small, and the warning is one that we promote to an error. Now there is a warning that the buffer is too big (-Wlarger-than=), but we don't promote those to errors, yet.
| * Fix a few issues noted by LGTM (#1421)jhendersonHDF2022-02-043-7/+12
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| * Snprintf2 (#1399)Sean McBride2022-01-284-11/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | * Replaced many uses of sprintf with safer snprintf Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable. * Removed unnecessary use of static on small buffers This improves thread safety. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Remove const from the argv tools/tests main sig. (#1390)Allen Byrne2022-01-2817-45/+46
| | | | | | | | | | | | | | | | | | * Remove const from the argv tools/tests main sig. * also remove const from H5_get_option and parse_command_line. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * OESS-168: Remove clang warnings. (#1295)H. Joe Lee2021-12-151-1/+1
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| * OESS-168: Remove clang warnings. (#1294)H. Joe Lee2021-12-151-4/+4
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| * OESS-168: Remove clang warnings. (#1277)H. Joe Lee2021-12-101-1/+1
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| * Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-0720-69/+69
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
| * Add option for h5repack timing (#1142)Allen Byrne2021-11-085-50/+166
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Add timing option to h5repack * Adjust help text * fix format * fix typos * Correct spacing * Change timing to use H5Timer * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Assume C99 fixed sized ints exist, use them (#470)Sean McBride2021-11-081-29/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | * Committing clang-format changes * Assume C99 fixed sized ints exist, use them * Assume H5_SIZEOF_LONG_DOUBLE != 0, `long double` has existed since C89 Note, this is only assuming that `long double` exists, no assumptions about its size have been touched. Didn't remove any code that does things like test if `long double` and `double` have different sizes. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Fix ASAN issue in h5dump error path (#1051)Allen Byrne2021-10-031-3/+0
| | | | | | | | | | * Fix ASAN issue in h5dump error path * Rework error allocation free.
| * VFD plugins (#602)jhendersonHDF2021-09-2912-129/+259
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Implement support for loading of Virtual File Drivers as plugins Fix plugin caching for VOL connector and VFD plugins Fix plugin iteration to skip paths that can't be opened * Enable dynamic loading of VFDs with HDF5_DRIVER environment variable * Temporarily disable error reporting during H5F_open double file open * Default to using HDstat in h5_get_file_size for unknown VFDs * Use macros for some environment variables that HDF5 interprets * Update "null" and "ctl testing" VFDs
| * OESS-168: Remove clang warnings. (#1046)H. Joe Lee2021-09-291-9/+9
| | | | | | | | | | | | | | This patch will remove clang warnings on Mac: ``` warning: implicit conversion increases floating-point precision: 'float' to 'double' [-Wdouble-promotion] ```
| * Fix several warnings (#720)jhendersonHDF2021-09-142-8/+19
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* | Minor changes: changed the options --vfd-value-1 and --vfd-value-2 to ↵Ray Lu2022-04-051-2/+12
| | | | | | | | --vfd-info-1 and --vfd-info-2; added the options for VFD in the help page.
* | Committing clang-format changesgithub-actions2022-03-221-6/+4
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* | Second round of commit.Ray Lu2022-03-223-1/+77
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* | typedef changes and adds RFCs to doc directory (#1264)Dana Robinson2021-12-051-3/+4
| | | | | | | | | | | | | | | | | | * Adds struct/enum typedefs in line with existing library * Adds onion VFD RFC docs (.docx and .pdf) * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* | Committing clang-format changesgithub-actions2021-11-221-2/+2
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* | checkpoint, minor fixes to make h5dump work, cleanupBrian Sawicki2021-11-221-1/+2
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* | Onion VFD: Remove magic numbers (#1196)Dana Robinson2021-11-151-1/+0
| | | | | | Removed magic numbers from structs
* | Cherry pick of non-VFD-related code from Sep 7th to present (#1112)Dana Robinson2021-10-194-20/+28
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* | Committing clang-format changesgithub-actions2021-09-081-10/+10
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* | Brings onion VFD files over from private branchDana Robinson2021-09-081-1/+20
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* More clang tidy (#908)Sean McBride2021-08-233-3/+3
| | | | | | | | | | | | | | | | | | | * Pacify clang-analyzer-unix.cstring.NullArg * Apply some bugprone-suspicious-string-compare * Apply some readability-simplify-boolean-expr * Apply some readability-make-member-function-const * Apple some bugprone-macro-parentheses * Changed an f suffix to L for `long double` * Applied some readability-uppercase-literal-suffix automatically * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Remove non-published short arg names (#917)Allen Byrne2021-08-182-252/+0
| | | | | | | * Remove non-published short arg names * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix link issue with perf/h5perf in parallel library (#889)jhendersonHDF2021-08-111-4/+4
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* Reorg tools perform to provide h5perf for installation (#884)Allen Byrne2021-08-1011-2/+8524
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo * Fix fortran configure checks * Rework H5_PAC_C_MAX_REAL_PRECISION setting logic * Add note about fortran configure change * Adds a quick for for some egregious chunk_info badness (#722) * Fixes issue with ccmake that prevents building Fortran (#723) ccmake runs iteratively, and the check_fortran_source_runs macros were clobbering a single output file that did not get updated on further configure iterations * Fix conflicts with merge * Move MAX_PRECISION back to HDF5UseFortran.cmake * Use STREQUAL to test macro argument * Move C language test to ConfigureChecks from HDF5UseFortran * MAX_PRECISION defines must be defined * Organize flags and align autotools and cmake * Fix comment in no-error-general warnings files. * Flag cleanup and fix typos * Add comment * Correct VAR used to find configure time file * Set the path correctly * Update missing release note info. * Update code owners * Correct JIRA note * add known problem. * Use only core library for testing dynamic plugins. * Reorg tools perform to provide h5perf for installation * Correct file paths * Correct path * Add new src folder to makefile list * Remove bin_PROGRAMS from TEST_PROG * Default h5perf executables to static build * Remove test lib dependency from h5perf * format adjustments * Remove test lib from autotools makefile * Add note * h5perf needs the math library Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Removes partial long options from the tools (#872)Dana Robinson2021-08-036-229/+14
| | | | | | | | Some of the command-line tools would allow partial long options (e.g., --datas instead of --dataset). These were inconsistently implemented, difficult to maintain, and occasionally blocked useful long options. They have been removed from all the tools. NOTE: This change should NOT be merged to 1.12 or earlier.
* Add support for parallel filters to h5repack (#832)jhendersonHDF2021-07-141-4/+21
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* Brings the tools getopt(3) replacement into the main library (#803)Dana Robinson2021-06-2910-534/+534
| | | | | | | * Moves get_option from the tools library to the C library * Adds H5 prefix to get_option call and variables * Renames the H5_get_option long options struct and enum
* Cleans up POSIX/C bits in H5private.h (#804)Dana Robinson2021-06-292-84/+84
| | | | | | | | | | | | | | | | | | * Cleans up POSIX/C bits in H5private.h * Assume difftime exists (C89) * Reorg AC_CHECK_HEADERS so headers are in alphabetical order * Split off networking-related AC_CHECK_HEADERS * Remove unused UNAME_CYGWIN from configure.ac * Remove checks for unused sys/timeb.h * Tidying pass over H5private.h HD prefix macros * Tidy H5win32defs.h * Add HD prefix to various scanf calls * Committing clang-format changes * Fixes to the alarm(2) code used in the tests to make Windows happy Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix several warnings (#747)jhendersonHDF2021-06-161-7/+32
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* Purges UFAIL from the library (#637)Dana Robinson2021-05-111-1/+1
| | | | | | | | | * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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