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* Check in files generated by autogen.sh for hdf5_1_10_5 release branch.Larry Knox2019-02-1611-0/+16628
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* Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-2/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Tools cleanupAllen Byrne2018-12-131-3/+3
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* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-231-19/+26
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* TRILAB-82 fix coverity high-impact issuesAllen Byrne2018-11-087-121/+130
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* Merge CMake changes from developAllen Byrne2018-10-231-1/+1
| | | Improved cross-compiling and toolchains
* HDFFV-10594, 10332, 10531Allen Byrne2018-09-264-96/+102
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* Update system commands with HD prefix and whitespaceAllen Byrne2018-08-283-198/+198
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* Merge from developAllen Byrne2018-07-311-1/+1
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* Fix for HDFFV-10333:Vailin Choi2018-07-261-131/+159
| | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-2310-20/+20
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-0910-20/+20
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* | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-147-19/+18
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-1412-105/+81
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits) GGC requires attribute before function Correct COMPILE defs usage Add missing module_dir property Text cleanup Correct sentence punctuation. Add release note. Use set_property for MT flag Correct command usage Remove APPEND Fix typo Add missing test lib add missing folder to path Fix another command revert Missed a command revert Revert to old style for LINK_FLAGS gen expr not working LINK_FLAGS must be separate property sets Fix link flags syntax Revert refactor link flags refactor link flags to interface Refactor link flags ...
| * Text cleanupAllen Byrne2018-05-082-42/+18
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| * TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-2610-63/+63
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* | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-248-22/+23
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* TRILABS-20 set a compiler name on all project commandsAllen Byrne2018-04-2011-11/+11
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* TRILABS-19 Initial conversion of include_directories to targetsAllen Byrne2018-04-1711-56/+21
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* Cleanup API context function usage.Quincey Koziol2018-03-191-7/+12
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-1825-390/+335
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-03-121-16/+142
| |\ | | | | | | | | | | | | | | | | | | | | | develop * commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1': Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| | * Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-16/+142
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| * | Change CMake min to 3.10Allen Byrne2018-03-0911-11/+11
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| * Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-2711-11/+11
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| * HDFFV-10412 fix typoAllen Byrne2018-02-211-1/+1
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| * HDFFV-10412 moved check back into normal pathAllen Byrne2018-02-211-20/+20
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| * Fix indentationAllen Byrne2018-02-191-2/+2
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| * HDFFV-10384 Add opt arg to helpAllen Byrne2018-02-151-2/+2
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| * HDFFV-10384 Add optional arg to enable-error-stackAllen Byrne2018-02-145-29/+32
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| * Merge pull request #876 in HDFFV/hdf5 from ↵Vailin Choi2018-02-144-26/+67
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_hdf5_fork:bugfix/version_bounds to develop * commit 'b4294d8d3e5937527e9814f23d04df412ebbe770': Added comment for clarification about latest as 1.10. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Fixed typos Platforms tested: Linux/32 (jam) Additional tests Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test) Added gen_bounds Cleaned up per comments in PR# 876 Modifications made based on comments from pull request. Added gen_bounds.c Added gen_bounds.c Fix bounds check for the generation of cache image. Modify usage description for -j and -k options so that it is more informative. Modify h5repack usage so that it is more descriptive. Changes made based on code reviews. Further improvement Fixed comment. Adding data file generator Description: Added gen_bounds.c to generate the following files: - bounds_earliest_latest.h5 - bounds_earliest_v18.h5 - bounds_latest_latest.h5 - bounds_v18_latest.h5 - bounds_v18_v18.h5 for testing the version bounds fix in 1.8 and 1.6. Initial checkin for library version bounds Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| | * Modifications made based on comments from pull request.Vailin Choi2018-02-071-4/+4
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| | * Merge branch 'trunk_merge' into bugfix/version_boundsVailin Choi2018-01-282-209/+3
| | |\ | | | | | | | | | | | | Keep it up-to-date with develop.
| | * \ Merge branch 'develop' into bugfix/version_boundsVailin Choi2018-01-2312-32/+13
| | |\ \ | | | | | | | | | | | | | | | Keep the branch up-to-date.
| | * | | Modify usage description for -j and -k options so that it is more informative.Vailin Choi2018-01-181-2/+3
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| | * | | Modify h5repack usage so that it is more descriptive.Vailin Choi2018-01-161-5/+16
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| | * | | Merge branch develop into bugfix/version_boundsVailin Choi2018-01-1210-34/+34
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| | * \ \ \ (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-2513-283/+276
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| * | | | | | HDFFV-10345 spelling errorsAllen Byrne2018-02-051-2/+2
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| * | | | | | HDFFV-10398 use the simpler add_subdirectory signatureAllen Byrne2018-01-301-10/+10
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| * | | | | HDFFV-10396 Eliminate overuse of h5tools_simple_prefix functionAllen Byrne2018-01-252-209/+3
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| * | | | HDFFV-10393 fix incorrect search for name in h5repack object tableAllen Byrne2018-01-181-5/+7
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| * | | | HDFFV-10392 change size of local array to 16 charsAllen Byrne2018-01-171-6/+6
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| * | | | HDFFV-10385 rework java namesAllen Byrne2018-01-1710-21/+0
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| * | | HDFFV-10385 refactor CMAKE_BUILD_TYPE usageAllen Byrne2018-01-0910-34/+34
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* | | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-26/+33
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* | Minor warning fixesDana Robinson2017-11-155-6/+11
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* | Correct typoAllen Byrne2017-10-241-2/+2
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* | fix typoAllen Byrne2017-10-241-1/+1
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* | Fix typosAllen Byrne2017-10-241-1/+1
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