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* Merge pull request #2530 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-214-31/+25
|\ | | | | | | | | | | | | to develop * commit 'c6097935d5be4c3750b9bf9167783ad28158905b': Separated VFD and VOL parameters in tools.
| * Separated VFD and VOL parameters in tools.Dana Robinson2020-04-214-31/+25
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* | Trim trailing whitespaceQuincey Koziol2020-04-203-7/+7
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* Fixed problems with S3 and HDFS VFDs.Dana Robinson2020-04-173-6/+6
| | | | | | * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
* Update h5repack long arguments for id-->value changes.Dana Robinson2020-04-141-2/+2
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* Changed identifiers and command-line options from "id" to "value" in toolsDana Robinson2020-04-141-8/+8
| | | | code to be in agreement with H5VL API terminology.
* Added support for passing connector info strings via the commandDana Robinson2020-04-094-11/+11
| | | | line to the tools internals.
* Fix for passthrough VOL not passing tools tests due to incorrectDana Robinson2020-04-082-12/+3
| | | | optional callback queries.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-063-31/+59
|\ | | | | | | | | | | | | * commit '4830a1796441abbb5a4fbd2cff9a651f2a0d066e': Updated tools dump output when dataset offset is undefined. Added checks for native optional call support in some of the tools. Misc changes for h5dump VOL changes.
| * Merge branch 'develop' into tools_vol_updateDana Robinson2020-04-061-8/+8
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| * | Added checks for native optional call support in some of the tools.Dana Robinson2020-04-022-26/+54
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| * | Merge branch 'develop' into tools_vol_updateDana Robinson2020-04-024-37/+37
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| * \ \ Merge branch 'develop' into tools_vol_updateDana Robinson2020-03-311-0/+2
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| * \ \ \ Merge branch 'tools_vol_update' of ↵Dana Robinson2020-03-302-45/+52
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into tools_vol_update
| * | | | | Misc changes for h5dump VOL changes.Dana Robinson2020-03-302-6/+6
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* | | | | | TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-0/+2
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* | | | | Fixed unnecessary H5R casts in the tools that were raising warnings.Dana Robinson2020-04-021-8/+8
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* | | | Minor renaming in the tools code.Dana Robinson2020-03-314-37/+37
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* | | Merge pull request #2479 in HDFFV/hdf5 from ~GHEBER/hdf5:bugfix/HDFFV-11065 ↵Gerd Heber2020-03-301-0/+2
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | to develop * commit '2dfc047bc4aca7c13bccf44da97bff026cbbf5a6': Fix for HDFFV-11065.
| * | Fix for HDFFV-11065.Gerd Heber2020-03-291-0/+2
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* | Fix latent bug in h5repack options file readingJordan Henderson2020-03-292-45/+52
|/ | | | Add 'enable-error-stack' option to h5format_convert
* Minor renaming in h5dump (addr --> token)Dana Robinson2020-03-282-30/+30
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* Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to developJordan Henderson2020-03-2712-525/+449
|\ | | | | | | | | | | | | * commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172': A few small tweaks to the tools from review Replace usage of some standard library functions with HD- versions Update Tools library to be better compatible with VOL connectors
| * A few small tweaks to the tools from reviewJordan Henderson2020-03-273-6/+6
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| * Replace usage of some standard library functions with HD- versionsJordan Henderson2020-03-261-2/+2
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| * Update Tools library to be better compatible with VOL connectorsJordan Henderson2020-03-1712-525/+449
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Modify h5repack to integrate with VOL connectors Update tools library to accomodate VOL connectors Update logic in h5tools_fopen for VOL connectors Add command-line options to h5repack for specifying in/out VOL connectors Implement h5tools_set_vol_fapl Fix library shutdown issue Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme Avoid H5Ocopy in h5repack when using different VOL connectors Update h5tools_test_utils.c for ROS3 and HDFS integration
* | Add extensive warnings to tools executablesAllen Byrne2020-03-258-0/+22
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* Fix standalone linkAllen Byrne2020-02-251-3/+3
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-2111-11/+11
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* HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-02-071-1/+8
| | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
* Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-291-2/+2
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* Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-291-1/+1
|\ | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| * Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
* | testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-291-5/+7
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
* fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, ↵kmu2020-01-272-5/+5
| | | | Wsign-compare, Wmisleading-indentation, Wshadow
* squash cast warning fixkmu2020-01-234-8/+8
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* Change tools debug macros to not use error stackAllen Byrne2020-01-231-10/+10
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* merge and fixkmu2020-01-2112-180/+251
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| * Merge branch 'develop' into stack_size_warningsDana Robinson2020-01-1717-283/+352
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| | * Squashed commit of the token_refactoring branch:Dana Robinson2020-01-1611-161/+229
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| * | Fixed stack and frame size warnings. Not complete, but fixes most ofDana Robinson2020-01-151-19/+22
| | | | | | | | | | | | the easier cases.
* | | merge and fix conflictkmu2020-01-1916-130/+126
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| * | Update tools hid_t declarations with H5I_INVALID_HIDAllen Byrne2020-01-1316-123/+124
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* | merge and fix conflictskmu2020-01-1417-780/+1046
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| * Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-061-3/+3
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
| | * address problems from commentskmu2019-12-111-1/+1
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| | * fix and address commentskmu2019-12-111-2/+2
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| | * Merge branch 'develop' into bugfix/intel_warningskmu2019-12-092-9/+7
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| | * | remove unnecessary check macrokmu2019-12-061-4/+1
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| | * | fix intel compile warningskmu2019-12-041-3/+6
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