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* Update tools hid_t declarations with H5I_INVALID_HIDAllen Byrne2020-01-1316-123/+124
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* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-061-3/+3
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
| * address problems from commentskmu2019-12-111-1/+1
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| * fix and address commentskmu2019-12-111-2/+2
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| * Merge branch 'develop' into bugfix/intel_warningskmu2019-12-092-9/+7
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| * | remove unnecessary check macrokmu2019-12-061-4/+1
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| * | fix intel compile warningskmu2019-12-041-3/+6
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* | | Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-042-2/+2
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* | | Clean up tools warnings introduced by H5TOOLS_ERR_INIT macroJordan Henderson2019-12-319-399/+385
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* | | Refactor tools library error handling macrosJordan Henderson2019-12-2810-457/+456
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* | | HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3Allen Byrne2019-12-201-1/+1
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* | | HDFFV-10980 - h5diff uses new ref APIsAllen Byrne2019-12-199-36/+45
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* | | Update h5debug to retrieve file pointer through VOL frameworkQuincey Koziol2019-12-171-1/+7
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* | | Address compile warningsAllen Byrne2019-12-061-18/+0
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* | | Update h5ls help and rework dump_mem routines for attrsAllen Byrne2019-12-043-96/+57
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* | | Add debug compile option as commentAllen Byrne2019-12-041-0/+2
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* | | Update reference callsAllen Byrne2019-12-041-10/+21
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* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-022-9/+7
|\ \ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f': Fix missing free in H5T__ref_mem_read() Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls(). Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere. Add support for point selections to H5S_select_project_intersection. Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf3)" Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility." H5R: fix H5Tconv to check for null references Trivial parameter renaming in VOL API calls. Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package. Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
| * | Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-272-9/+7
| |/ | | | | | | level and fixing some code.' (commit 5c911d8baf3)"
* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-11-262-7/+9
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits) Oops, remove more C99 designated initializers for VS 2010 compatibility. Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. ...
| * Change some GCC warnings to errors. Fix code to quiet some warnings.David Young2019-11-052-7/+9
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* | Comment correctionAllen Byrne2019-11-211-1/+1
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* | HDFFV-10876 Update h5dump and h5ls for new ref api.Allen Byrne2019-11-0712-639/+949
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* Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim()Jerome Soumagne2019-10-085-9/+11
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* More whitespace changesAllen Byrne2019-10-031-165/+52
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* Whitespace cleanupAllen Byrne2019-10-031-159/+157
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* HDFFV-10919 merge synchingAllen Byrne2019-10-025-234/+122
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* Update versioning to next major versionAllen Byrne2019-09-251-1/+2
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* Merge branch 'develop' of ↵Jacob Smith2019-09-241-2/+2
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * Fix missing option and incorrect closeAllen Byrne2019-09-241-2/+2
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* | Revert else-if to single line.Jacob Smith2019-09-241-22/+12
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* | Merge branch 'develop' of ↵Jacob Smith2019-09-2317-1408/+1794
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * HDFFV-10901 add missing config optionsAllen Byrne2019-09-132-623/+435
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| * HDFFV-10876 h5dump OPAQUE size should be optionalAllen Byrne2019-08-271-8/+0
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| * OESS-29 Update HD prefix mostlyAllen Byrne2019-08-241-1/+1
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| * Add HD prefix to testsAllen Byrne2019-08-1512-745/+770
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| * Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-143-2/+14
| | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| * Added the map (H5M) APIDana Robinson2019-08-133-0/+5
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| * Merge reconciliation and VFD test fixesAllen Byrne2019-08-043-8/+7
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-293-178/+724
| |\ | | | | | | | | | | | | | | | | | | | | | * commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c': Update comment and check for strtoumax. Modify CMakeLists.txt file for renamed h5tools_test_utils files. Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers. Squashed commit of the following:
| | * Squashed commit of the following:Larry Knox2019-07-253-178/+724
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| * | Update libvers usageAllen Byrne2019-07-281-1/+2
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| * HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-171-7/+0
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* | Change print calls to HD-wrapped.Jacob Smith2019-09-232-61/+68
| | | | | | | | Minor formatting tweaks (inc. regressions and in-file style-matching).
* | Add copyright/disclaimer to repack gentest.Jacob Smith2019-07-221-7/+0
| | | | | | | | Minor formatting tweaks.
* | Merge branch 'develop' of ↵Jacob Smith2019-07-227-63/+33
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * Updates to warnhist script, along with a few cleanups, and add some commentsQuincey Koziol2019-07-101-1/+1
| | | | | | | | to warning cleanups that are a bit obscure.
| * Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-031-16/+8
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| * Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-282-7/+7
| | | | | | | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
| * Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-214-40/+17
| | | | | | | | clean up warnings.
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