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* More whitespace changesAllen Byrne2019-10-031-165/+52
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* Whitespace cleanupAllen Byrne2019-10-031-159/+157
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* HDFFV-10919 merge synchingAllen Byrne2019-10-025-234/+122
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* Update versioning to next major versionAllen Byrne2019-09-251-1/+2
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* Merge branch 'develop' of ↵Jacob Smith2019-09-241-2/+2
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * Fix missing option and incorrect closeAllen Byrne2019-09-241-2/+2
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* | Revert else-if to single line.Jacob Smith2019-09-241-22/+12
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* | Merge branch 'develop' of ↵Jacob Smith2019-09-2317-1408/+1794
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * HDFFV-10901 add missing config optionsAllen Byrne2019-09-132-623/+435
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| * HDFFV-10876 h5dump OPAQUE size should be optionalAllen Byrne2019-08-271-8/+0
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| * OESS-29 Update HD prefix mostlyAllen Byrne2019-08-241-1/+1
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| * Add HD prefix to testsAllen Byrne2019-08-1512-745/+770
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| * Fix compiler warnings with diabled ROS3 and HDFS VFDs.Jacob Smith2019-08-143-2/+14
| | | | | | | | | | | | Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
| * Added the map (H5M) APIDana Robinson2019-08-133-0/+5
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| * Merge reconciliation and VFD test fixesAllen Byrne2019-08-043-8/+7
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-07-293-178/+724
| |\ | | | | | | | | | | | | | | | | | | | | | * commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c': Update comment and check for strtoumax. Modify CMakeLists.txt file for renamed h5tools_test_utils files. Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers. Squashed commit of the following:
| | * Squashed commit of the following:Larry Knox2019-07-253-178/+724
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge changes from update_merged_S3_HDFS branch into develop. commit d5034315aea88629929ac0c9c59ebfafd5f21a31 Merge: 9c48823 d3fdcd8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jul 25 08:24:53 2019 -0500 Merge branch 'develop' into update_merged_S3_HDFS
| * | Update libvers usageAllen Byrne2019-07-281-1/+2
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| * HDFFV-10845 fix configure check and PATHsAllen Byrne2019-07-171-7/+0
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* | Change print calls to HD-wrapped.Jacob Smith2019-09-232-61/+68
| | | | | | | | Minor formatting tweaks (inc. regressions and in-file style-matching).
* | Add copyright/disclaimer to repack gentest.Jacob Smith2019-07-221-7/+0
| | | | | | | | Minor formatting tweaks.
* | Merge branch 'develop' of ↵Jacob Smith2019-07-227-63/+33
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * Updates to warnhist script, along with a few cleanups, and add some commentsQuincey Koziol2019-07-101-1/+1
| | | | | | | | to warning cleanups that are a bit obscure.
| * Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-031-16/+8
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| * Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-282-7/+7
| | | | | | | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
| * Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-214-40/+17
| | | | | | | | clean up warnings.
* | Minor formatting adjustments.Jacob Smith2019-07-222-20/+6
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* | Undo some formatting modifications.Jacob Smith2019-06-213-44/+40
| | | | | | | | Update MANIFEST.
* | Merge branch 'develop' into bugfix/repack_external_storageJacob Smith2019-06-2014-781/+243
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| * HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-1810-141/+242
| | | | | | | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
| * Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-142-227/+0
| | | | | | | | | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
| * Modified Makefile.ams for h5repack, h5watch and gif2h5 to allowLarry Knox2019-06-123-413/+1
| | | | | | | | | | | | | | disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
* | First pass at repack consolidating external storage if layout given.Jacob Smith2019-05-311-3/+12
| | | | | | | | Checks out manually, tests still complain.
* | Formatting changes, mostly.Jacob Smith2019-05-301-58/+125
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* | Modify code comments for clarity.Jacob Smith2019-05-281-145/+218
| | | | | | | | Some minor reformatting.
* | refactor h5repack_main.c -- remove some redundancy, formattingJacob Smith2019-05-241-173/+134
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* | Fit help message to 80 character width and clarify some details.Jacob Smith2019-05-141-27/+44
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* Invalid position of declaration fixed.Allen Byrne2019-01-251-1/+2
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* Fixed HDFFV-10586 and HDFFV-10588Binh-Minh Ribler2019-01-151-1/+2
| | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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* Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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* HDFFV-10578 and HDFFV-10676Binh-Minh Ribler2019-01-061-3/+4
| | | | | | | | | | | | | | | | | | Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error. In H5O__chunk_deserialize, replaced an assert with an if statement and reporting error, per Neil's recommendation HDFFV-10676 - CVE-2018-13873 Also in H5O__chunk_deserialize, added an assertion to detect out of bound ids
* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-141-19/+26
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* TRILAB-81 fix typoAllen Byrne2018-10-241-1/+1
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* TRILAB-82 fixed errors found in reviewAllen Byrne2018-10-242-63/+63
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* TRILAB-81 Output error if filename length is greater then 255Allen Byrne2018-10-191-0/+5
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* TRILAB-81 Coverity fixAllen Byrne2018-10-191-18/+21
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* TRILAB-81 coverity fixesAllen Byrne2018-10-174-11/+12
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* VOL FEATUREDana Robinson2018-10-104-38/+38
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* CMake changes for SKIPPED and flush testsAllen Byrne2018-09-241-1/+1
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