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* Sync tools with develop (#3301)Dana Robinson2023-07-2810-0/+30
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* Add no subsets option to h5diff like h5dump (#2759)Allen Byrne2023-04-1810-0/+20
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* Onion VFD (#1953)Dana Robinson2022-08-029-0/+59
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Onion VFD feature * Fixes onion VFD errors with non-sec2 backing store VFDs * Disables the onion VFD tests w/ ph5diff * Disables non-sec2 VFDs as onion VFD backing stores * Committing clang-format changes * Formatted source * Typo * Adds onion VFD tools tests to CMake * Fixes for v16 API compatibility * Memset structs to avoid bad frees on errors * H5Dwrite() calls now use H5T_NATIVE_INT as the memory type vs LE * Properly decodes checksums on BE machines * Be more careful about uint64_t to haddr_t/hsize_t conversions * Another fix for BE data comparison * Removed double underscores from onion constants * Replace hard-coded onion header string w/ constant * Fixes cleanup paths in H5FD__onion_ingest_history() * Fixed use of size_t revision numbers * Fix h5dump revision count format string Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Move error-stack text to top of usage display (#1564)Allen Byrne2022-04-0110-20/+30
| | | | | | | | | * Move error-stack text to top of usage display * Add optional tag ti list * format changes * Revert incorrect change
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-0710-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* VFD plugins (#602)jhendersonHDF2021-09-2910-0/+120
| | | | | | | | | | | | | | | | | * Implement support for loading of Virtual File Drivers as plugins Fix plugin caching for VOL connector and VFD plugins Fix plugin iteration to skip paths that can't be opened * Enable dynamic loading of VFDs with HDF5_DRIVER environment variable * Temporarily disable error reporting during H5F_open double file open * Default to using HDstat in h5_get_file_size for unknown VFDs * Use macros for some environment variables that HDF5 interprets * Update "null" and "ctl testing" VFDs
* Primary change is HDFFV-11212 - new refs and JNI (#372)Allen Byrne2021-02-2510-0/+120
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
* TRILABS-277 Use JIRA number as #ifdefAllen Byrne2020-08-151-0/+30
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* Correct reference fileAllen Byrne2020-07-291-2/+2
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* Correct h5diff filenamesAllen Byrne2020-07-295-4/+4
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* Tools refactorAllen Byrne2020-07-1521-83/+329
| | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
* Fixed h5diff command-line parameters to use 1 and 2 instead of srcDana Robinson2020-04-2210-100/+100
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* Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.Dana Robinson2020-04-2110-0/+120
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* Correct flaws in test scripts and filesAllen Byrne2019-12-221-3/+3
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* HDFFV-10980 - h5diff uses new ref APIsAllen Byrne2019-12-193-0/+56
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* HDFFV=10632 test cleanupAllen Byrne2018-12-0611-28/+0
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* HDFFV-10632 - split stderr and stdout in cmakeAllen Byrne2018-12-039-26/+12
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* HDFFV-8745 remove obsolete filesAllen Byrne2018-01-102-0/+0
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* HDFFV-9745 Create test and files to verify fixesAllen Byrne2018-01-045-13/+72
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* HDFFV-8745 remove obsolete filesAllen Byrne2018-01-022-0/+0
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* HDFFV-8745 - fix implementation of 8625Allen Byrne2018-01-022-5/+10
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* Fix tools error handling and valgrind issuesAllen Byrne2017-10-181-7/+3
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* Fix error handling issuesAllen Byrne2017-10-179-12/+16
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* Correct test resultsAllen Byrne2017-10-172-2/+2
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* HDFFV-1097 Changed file columnsAllen Byrne2017-10-1616-2083/+2083
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* HDFFV-10297 add h5copy test and fix h5diff errorsAllen Byrne2017-10-1610-10/+10
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* HDFFV-9774 Apply standard mask to .err filesAllen Byrne2017-09-066-12/+12
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* HDFFV-10276 Add filter mask for standard errAllen Byrne2017-09-066-12/+12
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* HDFFV-9774 Add enable-error-stack argument to h5diffAllen Byrne2017-08-3122-0/+80
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* HDFFV-10246 Add check for string not null before useAllen Byrne2017-07-251-0/+16
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* HDFFV-9055 Correct file generatorAllen Byrne2017-05-185-2/+2
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* HDFFV-9055 add test filesAllen Byrne2017-05-173-0/+25
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* HDFFV-9995 Clarify help textAllen Byrne2017-05-1610-90/+120
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* HDFFV-10128 Fixed string length with no null fixedAllen Byrne2017-05-161-13/+1
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* HDFFV-10128 add test to check null termAllen Byrne2017-05-153-1/+13
| | | Test is another dataset
* Final merge of page buffering branch to developQuincey Koziol2017-03-143-14/+0
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* HDFFV-10128 fix string compare and add testsAllen Byrne2017-03-036-0/+87
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* HDFFV-10118 fixed plugin tests for toolsAllen Byrne2017-01-204-5/+5
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* HDFFV-9994 add UD tests for toolsAllen Byrne2017-01-174-0/+23
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* Bring SWMR-related tools changes from revise_chunks to develop.Quincey Koziol2016-12-113-0/+14
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* Split tools into src and test - add foldersAllen Byrne2016-10-27235-0/+16090
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