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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-4/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Onion VFD (#1953)Dana Robinson2022-08-021-0/+64
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Onion VFD feature * Fixes onion VFD errors with non-sec2 backing store VFDs * Disables the onion VFD tests w/ ph5diff * Disables non-sec2 VFDs as onion VFD backing stores * Committing clang-format changes * Formatted source * Typo * Adds onion VFD tools tests to CMake * Fixes for v16 API compatibility * Memset structs to avoid bad frees on errors * H5Dwrite() calls now use H5T_NATIVE_INT as the memory type vs LE * Properly decodes checksums on BE machines * Be more careful about uint64_t to haddr_t/hsize_t conversions * Another fix for BE data comparison * Removed double underscores from onion constants * Replace hard-coded onion header string w/ constant * Fixes cleanup paths in H5FD__onion_ingest_history() * Fixed use of size_t revision numbers * Fix h5dump revision count format string Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* H5repack tests should fail if a corrupted file causes h5repack to (#1138)Larry Knox2021-10-261-3/+14
| | | | | | * H5repack tests should fail if a corrupted file causes h5repack to segfault/core dump. * Add release note for HDFV-10590, CVE-2018-17432.
* Bmr dev hdffv 11223 (#640)bmribler2021-05-121-2/+7
| | | | | | | | | | | | | | | | | | | * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update license url part2 (#333)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test.
* Fixed typo!!Binh-Minh Ribler2020-11-121-1/+1
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* Fixed typo!Binh-Minh Ribler2020-11-121-1/+1
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* Added line for new fileBinh-Minh Ribler2020-11-121-0/+2
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* Miscellaneous updateBinh-Minh Ribler2020-11-111-1/+1
| | | | | - added test for CMake - renamed new input file to conform to the existing files
* Added test for the fix HDFFV-10590Binh-Minh Ribler2020-10-281-0/+32
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* Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-031-46/+248
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| * Add back function for VERIFY_EXTERNAL_CONSOLIDATIONAllen Byrne2020-08-251-0/+20
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| * HDFFV-9984 fix test logicAllen Byrne2020-08-141-2/+2
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| * HDFFV-9984 - add missing ref filesAllen Byrne2020-08-141-0/+12
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| * HDFFV-9984 Add options to merge/prune external links during repackAllen Byrne2020-08-141-65/+235
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* | Use the portable `-eq` operator instead of the bash-ism `==`. Fixes theDavid Young2020-07-071-1/+1
|/ | | | tests on NetBSD, where /bin/sh != bash.
* Skip testing of passthrough VOL connector in a Family File tools testJordan Henderson2020-04-031-1/+1
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* Merge branch 'develop' of ↵Jacob Smith2019-09-231-2/+7
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage
| * HDFFV-10905 fix test scripts for no zlibAllen Byrne2019-09-171-2/+7
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* | Refactor h5repackgentest to have more modular internals, for easierJacob Smith2019-09-231-9/+15
| | | | | | | | | | addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files.
* | Add forgotten files to include from h5repack testfiles for tests.Jacob Smith2019-06-201-0/+10
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* | Fix failing automated reporting.Jacob Smith2019-06-191-5/+7
| | | | | | | | Add 8-bit big-endian testfile.
* | First pass at repack consolidating external storage if layout given.Jacob Smith2019-05-311-1/+2
| | | | | | | | Checks out manually, tests still complain.
* | Add initial failing test for h5repack copying external data into new file.Jacob Smith2019-05-301-1/+92
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* Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-101-2/+6
| | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* Develop normalization with vol_integration.Dana Robinson2018-09-191-0/+1
| | | | | Mostly peripheral things like the tools and wrappers, with just enough core library code to support that.
* Misc improvementBinh-Minh Ribler2018-02-281-1/+3
| | | | | | | | | | | Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Improving testsBinh-Minh Ribler2018-02-171-2/+94
| | | | | | | | | | | | Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
* Add h5repack tests for paged aggregationVailin Choi2017-07-291-0/+103
| | | | Add tests to h5repack.sh.in to verify options added for paged aggregation work as expected.
* HDFFV-8611 add autotools testAllen Byrne2017-05-221-1/+7
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* Fix typo in name of ddl file in commandAllen Byrne2017-05-051-1/+1
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* Make test scripts fail if result files are createdAllen Byrne2017-05-021-16/+22
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Clean up whitespaceQuincey Koziol2017-02-071-15/+15
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* Split tools into src and test - add foldersAllen Byrne2016-10-271-0/+1265
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