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* [svn-r17210] Description:Quincey Koziol2009-07-212-4/+4
| | | | | | | | | | | | | | | | | | | | | Bring r17157:17209 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17085] Description:Quincey Koziol2009-06-181-1/+3
| | | | | | | | | | | | | | | | | | | | | Bring r17002:17084 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16825] Description:Quincey Koziol2009-04-2160-60/+60
| | | | | | | | | Bring revisions 16636:16821 from trunk to revise_chunks branch Tested on: FreeBSD/32 6.3 (duty) Mac OS X/32 10.5.6 (amazon) (h5committest not needed on this branch)
* [svn-r16634] Description:Quincey Koziol2009-03-312-12/+0
| | | | | | | | | | | | | | | | | | | | | Bring r16618:16633 back from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16619] Description:Quincey Koziol2009-03-262-0/+12
| | | | | | | | Bring r16606:16618 from trunk to the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) h5committest not necessary on this branch
* [svn-r16537] Description:Quincey Koziol2009-03-034-0/+36
| | | | | | | | | | | | | | | | | | | | | Merge r16500:16536 from trunk into revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16311] Description:Quincey Koziol2009-01-142-0/+36
| | | | | | | | | | | | | | | | | | | Bring revisions 16280:16307 back from trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15991] Merge with 1.8 rev 15969Pedro Vicente Nunes2008-10-291-2/+2
| | | | | | | | | | | | | | | Introduced a new feature in the tools library regarding command line parsing In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory) Used for the h5dump binary option -b It can be now 1) -b (defaults to NATIVE) 2) - b NATIVE 3) - b FILE 4) -b LE 5) -b BE Note: the keyword NATIVE replaces MEMORY This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files Tested: linux
* [svn-r15886] Purpose: Close bug 1332Neil Fortner2008-10-1616-20/+158
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15804] Purpose: Add option to h5ls to enable external link traversal.Neil Fortner2008-10-0713-6/+35
| | | | | | | | Description: Added -E option to h5ls. When set, this alows h5ls to enter external files (currently only through an external link). The -r option by itself will no longer allow h5ls to traverse external links. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15668] Purpose: Add feature requested in bug #1282Neil Fortner2008-09-219-9/+46
| | | | | | | | | | Description: Adds capability to h5ls to traverse external links when the -r (recursive) option is given. Changes to the way absolute path names are patched in h5trav.c. Changes to the way recursive traversal starting from a non-root group is handled (which also fixes some preexisting issues). Tests added for these cases. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15458] Purpose: Modify the library to take the proper action when ↵inactive/jpeg_converterNeil Fortner2008-08-1155-0/+0
| | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-071-3/+2
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15315] remove h5jam filesPedro Vicente Nunes2008-07-034-4/+0
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* [svn-r15314] moved h5jam test files to tools/h5jam/testfilesPedro Vicente Nunes2008-07-032-0/+0
| | | | tested: linux
* [svn-r15251] Moved all h5copy testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-202-432/+0
| | | | | | tools/h5copy/testfiles tested: linux
* [svn-r15247] Moved all h5repack testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-2016-1/+0
| | | | | | tools/h5repack/testfiles tested: linux
* [svn-r15238] Pedro Vicente Nunes2008-06-1975-5359/+0
| | | | | | Moved all h5diff testfiles from /tools/testfiles to tools/h5diff/testfiles Tested: linux, solaris
* [svn-r15222] moved the h52jpeg testfiles location from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-171-0/+0
| | | | | | | | /tools/h52jpeg/testfiles updated the shell script accordingly tested: linux
* [svn-r15219] added a test file and a test scriptPedro Vicente Nunes2008-06-161-0/+0
| | | | | | | for now, the test script just calls the tool binary with the command line parameters, with no special checking of the accuracy of the output contents (jpeg files) tested: linux
* [svn-r15143] Pedro Vicente Nunes2008-06-051-0/+0
| | | | | | | | | | Fix for #1169 http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1169 don't print attributes to stdout when doing binary output added an attribute to the file run on the binary output test tested: windows, linux
* [svn-r15133] Description:Quincey Koziol2008-06-041-0/+5
| | | | | | | | | | | | | | | | | | | Fixed bug in h5ls that prevented relative group listings (like "h5ls foo.h5/bar") from working correctly. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15124] Purpose:Albert Cheng2008-06-021-0/+0
| | | | | | | | | | | | | | bug fixes. Description: Added code to create an empty hdf5 (named h5diff_empty.h5) in order to test if h5diff compares correctly an empty hdf5 vs. a non-empty one. Tested: Tested in kagiso of h5diffgentest itself. Verified by h5dump that h5diff_empty.h5 was indeed empty. Then "h5diff h5diff_empty.h5 h5diff_basic1.h5" returned 0 (should have returned non-zero).
* [svn-r14976] Support for external links follow up. The format is to print ↵Pedro Vicente Nunes2008-05-123-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | the target object as part of TARGETPATH, noted with some extra indentation The previous printing of LINKCLASS 64 was removed HDF5 "textlinksrc.h5" { GROUP "/" { EXTERNAL_LINK "ext_link1" { TARGETFILE "textlinktar.h5" TARGETPATH "dset" DATASET "dset" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 6 ) / ( 6 ) } DATA { (0): 1, 2, 3, 4, 5, 6 } } } } } There is no script test for this behavior so far, because test script uses complete paths that vary from test to test, making not possible to define a valid TARGETFILE in the file tested: windows, linux, solaris
* [svn-r14935] correct an error in the usage textPedro Vicente Nunes2008-05-051-1/+1
| | | | tested: windows, linux, solaris
* [svn-r14934] Add a test for the floating point user defined printf formatPedro Vicente Nunes2008-05-053-0/+23
| | | | | | | | | | | | | | | | Usage is -m T, --format=T Where T - is a string containing the floating point format, e.g '%.3f' The test consists of writing a number with 7 fractional digits (default precision display of %f is 6 digits) and have the 7 digits displayed with -m %.7f fpformat.h5 Tested: windows, linux, solaris Note: the output file was generated in linux, it may be possible that platforms other than the ones tested have a different representation of the number
* [svn-r14905] Introduced a ratio formula compression ratio = uncompressed ↵Pedro Vicente Nunes2008-05-015-5/+5
| | | | | | | | size / compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux, solaris
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-3015-9/+324
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-3015-324/+9
| | | | New fortran wrappers added.
* [svn-r14892] RFC display compression ratio in h5dumpPedro Vicente Nunes2008-04-295-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Here's the current behavior of h5dump regarding the printing of the dataset creation property list For example ./h5dump -H -p -d filters HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } The proposed behavior is to add this information after SIZE SIZE 385 (51.9%COMPRESSION) That percentage is obtained trough Per = (b-a) / a Where a = theoretical size obtained by multiplying datum size times number of elements b = size obtained with H5Dget_storage_size The final print would look like HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 (51.9%COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } tested: windows, linux, solaris
* [svn-r14792] bug fix: #1106 h5dump -b will dump ASCII values for datasets ↵Pedro Vicente Nunes2008-04-032-1/+1
| | | | | | after the first one. One variable that controls the binary output was incorrectly reset to zero after a binary output was done a first time. The effect was that on cases of several datasets, the ones after the first were not binary written. Eliminated the resetting of that variable and tested a file with several datasets. Modified the test file so that it is easier to test with the tool binread, that reads the binary output of h5dump. tested: windows, linux
* [svn-r14690] Description:Quincey Koziol2008-02-288-3/+318
| | | | | | | Handle comparing datasets & attributes w/variable-length strings properly. Tested on: Linux/64 2.6.9 (chicago)
* [svn-r14437] bug fix for h5dump subsetting (deal with blocks)and new test runsPedro Vicente Nunes2008-01-164-42/+52
| | | | | | | | | | | | | | | | | | | | | | | | | add a check for block overlap after the command line parsing * Algorithm * * In a inner loop, the parameters from SSET are translated into temporary * variables so that 1 row is printed at a time (getting the coordinate indices * at each row). * We define the stride, count and block to be 1 in the row dimension to achieve * this and advance until all points are printed. * An outer loop for cases where dimensionality is greater than 2D is made. * In each iteration, the 2D block is displayed in the inner loop. The remaining * slower dimensions above the first 2 are incremented one at a time in the outer loop * * The element position is obtained from the matrix according to: * Given an index I(z,y,x) its position from the beginning of an array * of sizes A(size_z, size_y,size_x) is given by * Position of I(z,y,x) = index_z * size_y * size_x * + index_y * size_x * + index_x * tested: windows, linux
* [svn-r14414] revert the subsetting calls of h5dump to 1 size block, still a ↵Pedro Vicente Nunes2008-01-152-11/+7
| | | | | | bug with size > 1 tested: linux
* [svn-r14412] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-17/+9
| | | | | | modified the 3D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14411] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-11/+9
| | | | | | | modified the 2D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14409] more progress on the block hyperslab bug, clean code Pedro Vicente Nunes2008-01-141-8/+6
| | | | | | modified the 1D test case for subsetting with block and stride factors tested: windows, linux
* [svn-r14384] new file with output regarding the new binary filePedro Vicente Nunes2008-01-081-0/+2
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* [svn-r14383] new binary file: with double dataset with NaN valuesPedro Vicente Nunes2008-01-081-0/+0
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* [svn-r14353] Description:Quincey Koziol2007-12-201-80/+80
| | | | | | | | | | | | | | | | | | | | | | | | | - Add hash value for skip list string types, to reduce # of string comparisons. - Fixed bug with metadata/small data block aggregator adding size == 0 block into file free space list. - Refactored metadata/small data block aggregator code into single set of common routines. - Changed block aggregator code to be smarter about releasing space in the 'other' block when the 'other' block has aggregated enough data. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14339] bug fix: aligned a line in usage that was not alignedPedro Vicente Nunes2007-12-121-1/+1
| | | | tested: linux
* [svn-r14324] bug fix: #786 (E3) h5dump refers to the user block as "boot block"Pedro Vicente Nunes2007-12-061-1/+1
| | | | | | replaced usage message with "super block" tested: linux
* [svn-r14284] Description:Quincey Koziol2007-11-2424-157/+73
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit_by_name() API routine to library. Eliminated all (five!) other group traversal routines and changed them all to use the new API routine. Cleaned up output of h5ls & h5stat: - Issue error when requesting recursive traversal of a file with the "group info" flag, but no group given - Print info about root group in all(?) appropriate situations - Don't print "verbose" information about root group until the root group is in the list of objects to display (mostly because h5ls & h5stat had a different twist on traversing the groups in a file that the other utilities) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14273] new feature: added some long options to the testsPedro Vicente Nunes2007-11-203-3/+3
| | | | tested: linux
* [svn-r14267] enhancement: formatted h5diff usage Pedro Vicente Nunes2007-11-1917-272/+425
| | | | tested: linux
* [svn-r14266] enhancement: format usage messagePedro Vicente Nunes2007-11-191-1/+2
| | | | tested: linux
* [svn-r14264] new features: 1) new usage for h5diff " A la" h5dump formatPedro Vicente Nunes2007-11-1617-357/+289
| | | | | | 2) new usage for h5repack and new command line parsing using the tools library parsing code tested: windows, linux, solaris
* [svn-r14259] New feature: removed one test and file from the h5diff shell ↵Pedro Vicente Nunes2007-11-131-54/+0
| | | | | | script that prints an error message that has an absolute path (invalid option), thus not suitable for the multi platform test
* [svn-r14258] new feature: make h5diff use the same command line parsing code ↵Pedro Vicente Nunes2007-11-1361-82/+105
| | | | | | | | | and syntax than h5dump usage is now h5diff [OPTIONS] file1 file2 [obj1[obj2]] tested: windows, linux, solaris
* [svn-r14216] add a -V version information for h5diffPedro Vicente Nunes2007-10-2218-0/+18
| | | | tested: windows, linux
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