| Commit message (Collapse) | Author | Age | Files | Lines |
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Bring r22287 from trunk to 1.8 branch:
Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward
the final design (as exemplified by the H5EA & H5FA code).
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & parallel
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update for HDFFV-7523 JPSS: h5dump fails to open an attribute when using the -a option to specify an attribute with a slash in the name
Description:
Added capability for "-a" option to show attributes containing "/"
by using an escape character. For example, for a dataset "/dset"
containing attribute "speed(m/h)", use "h5dump -a "/dset/speed(\/h)"
to show the content of the attribute.
Merged from HDF5 trunk r22052, r22063, r22108
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
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Tested: local linux after week in trunk
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Add tools error stack and check return from H5Dreference call.
Add missing file update
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If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command.
Updated test file results with error stack when link not found.
Tested: trunk
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Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack
Description:
h5repack sometimes became very slow when handling big chunked datasets in
certain cases. (when chunk boundary doesn't match with a hyperslab boundary.)
The main issue was from figuring out a hypeslab without considering chunk
boundary to read from and write to such datasets.
The update was made to figure out a better hyperslab unit with considering
chunk boundary to improve performance for such cases prior to the update.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
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Merge 1.8 and h5dump/tools and tests based on tools library from trunk.
Reduced warnings.
HDFFV-7949:
Remove duplicated functions in h5ls
Tested: local linux,h5committest
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Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option
Description:
Segfault occurred when h5ls access region reference data in an attribute.
This didn't occurred when -v option was used.
The cause was "h5tool_format_t info;" struct variable members were accessed
without proper values were assigned (was NULL), so printf failed later in the code.
Merged from HDF5 trunk r21865.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), , cmake-Windows (32-LE)
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attributes at root
Tested: local linux
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Replace contents of tnofilename.ddl with contents from tnofilename-with-packed-bits.ddl and use tnofilename.ddl in h5dump test scripts
Test local linux: cmake
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HDFFV-5878 - GMQS: h5dump - incorrect output format for array type with multiple elements in an index
Description:
Merged from HDF5 trunk r21014.
Fixed h5dump to display the first line of each element into correct
position for multiple dimention array type.
Before this fix, the first line of each element in array were displayed
after the last line of previous element without moving to the next
line (+indentation)
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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say which filter isn't registered. The fix is simple. Most of the effort is on the test. The file with filter enabled is created in gen_filter.c. The verification of the error message is in test_error.c. The output is compared against the standard output.
Tested on jam, koala, and heiwa.
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HDFFV-7607: h5ls - improve efficiency of test scripts - removing top 3 extra lines from expected output files
Description:
Merged from hdf5 trunk r20927.
This is a subtask from 'HDFFV-7514 - gmqs: h5dump - improve effectiveness of testing scripts for handling expected output files'.
This is prerequisite for 'HDFFV-7602 tools - upgrade tools' test scripts to share test files among tools, providing framework for test file re-usability.'
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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hdffv-7514 - GMQS: h5dump - improve effectiveness of testing scripts for handling expected output files
description:
Removed top 3 lines from expected output file and update testing scripts
accordingly. These lines started to become maintainence headaches.
First phase for h5dump test update. Next phase will be for h5ls.
this is prerequisite for 'hdffv-7602 tools - upgrade tools' test scripts to share test files among tools, providing framework for test file re-usability.'
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake (jam)
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Tested: local linux
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Change case of tools subtests to not conflict with tools tests.
Add SOVERSION for linux
Remove PACKED BITS define/idef blocks
Bring r20721 from trunk
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HDFFV-5948 - CHICAGO: Tools - implement missing external link test cases
Description:
Merged from HDF5 trunk r20595 and r20600.
Add three test cases for h5dump and h5ls.
- h5ls: external link to soft link with follow symlink.
- h5dump: external link to soft link with follow symlink.
- h5ls: external link to soft link without follow symlink.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
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cases in the tests for h5dump and h5diff. I also added the
test cases in the CMAKE script.
Tested on jam. But I tested the same change in the trunk with h5committest.
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Fixed HDFFV-4342 : GMQS: h5dump test fails when source directory is read-only
Description:
Merged from HDF5 trunk r20488 and r20490.
Updated h5dump test case script to prevent entire test failure upon
source code directory is read-only.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, windows)
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Bug 2182 - h5ls and h5dump: update to use --enable-error-stack among tools, also update related descriptions
Description:
Merged from HDF5 trunk r20378 and r20379
Decided to use --enable-error-stack long option name only to
display error stack messages from HDF5 lib among tools.
Updated to unify option name to '--enable-error-stack' for printing
HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now.
For h5ls, this replaces "-e/--errors" option, which is deprecated.
For h5dump, remove -E from help page and RM , which was added by mistake
before release1.8.7.
Help page and RM got updated.
Updated test case.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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bring r20349 from trunk
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Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output
Description:
Merged from HDF5 trunk r20231.
Fixed incorrect content and improved help page for -a option of h5ls.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
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Brought from trunk after one week of tests.
Tested: local linux
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Fixing Bug 2092 - h5dump does not display index for a dataset
Description:
Merged from HDF5 trunk r20108 and r20132.
h5dump skip displaying array indices every certain number when the
array type dataset is relatively big. The certain number varies
according to the size of each array.
This checkin fix the skipping array indices problem. This fix also
correct indentation of the dataset data output.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
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Bring 20044 from trunk
Tested: local linux
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h5dump: add dangling external link test case as part of Chicago project.
Merged from hdf5 trunk r19971.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), linew (solaris-BE)
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h5dump test to verify that signed/unsigned datasets print correctly.
Solves problem on heiwa with Signed char of 8 bits
Tested: local linux, heiwa
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Tested: local Linux
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Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is
difficult to parse.
Description:
Update to add curly brackets for the nested compound members, when
S (--simple) option is used with -l (--label), so user can tell
which members blong to which compound type.
Merged from hdf5 trunk r19751.
Tested:
jam (linux32-LE), amani (linux64-LE)
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(Missed edit from local test)
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linux script needed -R and double compare:
Tested: local linux
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Bring r19252 & 19253 from trunk to 1.8 branch:
Bring Coverity changes from branch to trunk:
r19161:
Fixed the part for matching the subset info with dataset
r19189:
BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset
Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump.
Changed all references to use new data structure.
Added tests for each subset parameter.
r19190:
Added new h5dump ddl files
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(h5committested on Coverity branch)
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the "h5dump_output_option" RFC. This required that the region reference code be duplicated and reduced to allow the do_bin_output() function to understand region references. The container type-id also needed to be propagated into the do_bin_output() function and functions referenced (render_bin_output*).
Existing tests tested the binary function, so only one test was added to test the region reference generated file.
Tested: local linux
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Bring r19179 from trunk to 1.8 branch:
Bring changes from Coverity branch back to trunk:
r19079 & 19080:
[BZ1942] h5dump -u to generate XML, it does not respect the -m option
xml version of dump_data function didn't check for use of fp_format variable.
Added new test expected file for committed bug 1942
r19103, 19104 & 19105:
[BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option.
Added new test file for solution to BZ1821
BZ1821 - Bring test changes from the shell script actually used.
Tested on:
Mac OS X/32 10.6.4 (amazon) debug & production
(h5committested on branch)
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Add --no-dangling-links option to h5ls.
Description:
Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code."
If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error).
Merged from hdf5 trunk r19051
Tested:
jam, amani, heiwa
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Support follow symbolic links.
Description:
Merged from hdf5 trunk r18943.
Add '--follow-symlinks' option to follow symbolic links (soft and external).
Update help page according to RM.
Remove some warning messages from compiler.
Tested:
jam
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Revised the online help page of h5dump to explain the packed bits feature and
added an example too.
Tested: h5committest plus jam tested with --disable-h5dump-packedbits.
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Tested: AlbertPax. Will do h5committest after check in.
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any more. Changed algorithm of creating mask which now sits
at the least significant bits. Display data by down shift
first and then mask it for display. Changed the variable
names to reflect the new purpose better.
Tested: AlbertPax (linux)
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Install packed-bits feature for h5dump.
testfiles/packedbits.h5:
New HDF5 test data file. Generated by h5dump/h5dumpgentest.
testfiles/tpbitsLengthPositive.ddl:
testfiles/tpbitsMaxExceeded.ddl:
testfiles/tpbitsSigned.ddl:
testfiles/tpbitsOffsetNegative.ddl:
testfiles/tpbitsUnsigned.ddl:
testfiles/tpbitsMax.ddl:
testfiles/tpbitsIncomplete.ddl:
testfiles/tpbitsOverlapped.ddl:
testfiles/tpbitsLengthExceeded.ddl:
testfiles/tpbitsOffsetExceeded.ddl:
Expected output files created to test various
components of the packed-bits feature.
testfiles/tpackedbits2.ddl:
testfiles/tpackedbits.ddl:
Previous output files no longer used.
Tested: albertPax (linux)
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Install packed-bits feature for h5dump.
Allen has installed the feature in the NPOESS feature branch.
I ported it back to the v1.8 branch for v1.8.5 release.
tools/h5dump/testh5dump.sh.in:
Added tests for the packed-bits feature.
tools/h5dump/h5dump.c
tools/h5dump/h5dump.h
Added code to parse and handled the packed-bits request.
tools/lib/h5tools.h
tools/lib/h5tools_str.c
tools/lib/h5tools.c
Added code to print packed-bits.
tools/testfiles/tpackedbits2.ddl
tools/testfiles/tnofilename-with-packed-bits.ddl
tools/testfiles/tpackedbits.ddl
Expected output files for packed-bits feature.
Tested:
h5committested the NPOESS branch.
Tested in the linux VM machine in my Dove.
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Tested: h5committest, local linux
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The test generates an array datatype of ints larger than the display buffer. The bug was exposed when the buffer was reallocated.
Tested: linux
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as on disk. I changed it
to undefined and let the caller functions decide the location of the datatype. For
H5Tdecode, it should mark the datatype as in memory. For other callers like H5Dopen or
H5Aopen, they should makr it as on disk.
Tested it on jam, smirom, linew.
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Also updated usage output.
Tested: linux
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