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* [svn-r13334] Added a new function to print the dimensions sizesPedro Vicente Nunes2007-02-1939-330/+266
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* [svn-r13321] revised attribute ordering done for the library makes h5diff to ↵Pedro Vicente Nunes2007-02-161-681/+681
| | | | | | output attributes in another order
* [svn-r13306] Description:Quincey Koziol2007-02-141-55/+55
| | | | | | | | | | | Mask off the storage utilization for the h5ls output, so that the h5ls output is more portable (VL datatype size is reported as the memory size instead of the file size, making the storage utilization incorrect - entered in bugzilla) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13303] Description:Quincey Koziol2007-02-141-55/+55
| | | | | | | | | Blank out the modification time, to eliminate another portability issue. Tested on: Linux/32 2.6 (chicago) FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13302] Description:Quincey Koziol2007-02-141-108/+108
| | | | | | | | Use the '-S' command line flag for h5ls, to make the output portable. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13301] Description:Quincey Koziol2007-02-144-370/+484
| | | | | | | | | | | Add '-p' flag to h5copy tool, to create intermediate "parent" groups that don't exist in destination file yet. Add more tests to h5copy script. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13297] Description:Quincey Koziol2007-02-1410-0/+103
| | | | | | | | | | | | | | | | Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command line, allowing the group structure for a file to be created in a script. This tool closely follows the 'mkdir' command line tool in UNIX/Linux. Allow tool library applications to pass a FAPL to the h5tool_fopen() call, giving some additional flexibility to tools which are adding objects to an existing HDF5 file (like h5copy & h5mkgrp). Fix missing files in MANIFEST from previous checkin(s). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13296] Pedro Vicente Nunes2007-02-142-1/+1
| | | | temporary fix for a daily test failure
* [svn-r13294] Description:Quincey Koziol2007-02-133-7/+322
| | | | | | | | | | | | Add empty & "full" groups to source HDF5 file and test copying them. Test renaming objects during copy Test specifying root group path for source & destination objects Tested on: Linux/32 2.6 (chicago) Too minor to require more tests
* [svn-r13293] Description:Quincey Koziol2007-02-131-2/+2
| | | | | | | | | | | Refactor h5copy testing script to abstract out some of the common behavior, obey the "HDF5_NOCLEANUP" environment variable, delete any output file left over from a previous run, add a "test variation" parameter to output file name for adding next sequence of test variations, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13292] Description:Quincey Koziol2007-02-131-0/+55
| | | | | | | | | | | | | | | Add feature to h5copy to allow it to add an object to an existing file, instead of blowing away existing file. Modify h5tools_fopen() routine to take access flags, so it can be used to open an existing file for writing. Added check to h5copy test script that verifies it has produced a file with the correct structure. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13288] Description:Quincey Koziol2007-02-133-986/+986
| | | | | | | | | | | | | Fix core dump for iterating over attributes and not passing in a "starting point". Update output files missed in previous checkin. This change essentially reverses a previous change of attribute ordering, leaving the output of h5dump & h5ls compatible with 1.6.x Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13286] Pedro Vicente Nunes2007-02-131-0/+0
| | | | replaced a dataset type from H5T_NATIVE_CHAR to H5T_NATIVE_SCHAR
* [svn-r13285] Pedro Vicente Nunes2007-02-122-15/+0
| | | | remove a test that was incorrectly added previously, that was not the feature that had to be tested
* [svn-r13283] Pedro Vicente Nunes2007-02-122-0/+15
| | | | added a test for the printing of long long numbers greater than 4GB
* [svn-r13280] Pedro Vicente Nunes2007-02-127-12024/+6572
| | | | 2 tests that were previously incorporated inside the array indices test file were separated from it. These are a test with a dataset with dimensions greater tan 4GB and a test to read by hyperslabs
* [svn-r13179] Pedro Vicente Nunes2007-01-2356-56/+56
| | | | replaced the path to XML schema from NCSA page to hdfgroup.org
* [svn-r13139] Fixed the MULTI problem (Bug #731) that corrupted the data. ↵Raymond Lu2007-01-126-0/+0
| | | | | | | The problem came from the EOA for the whole MULTI file. It's taken out because it's meaningless for MULTI file. Instead, each individual file has its EOA.
* [svn-r13134] Pedro Vicente Nunes2007-01-107-84/+71
| | | | | | | | | | New version of the function h5tools_dump_simple_subset, to display subsetting. The new algorithm is: Introduced an outer loop for cases where dimensionality is greater than 2D. In each iteration a 2D block is displayed by rows in a inner loop. The remainning slower dimensions above the first 2 are incremented one at a time in the outer loop Note: when blocks are introduced, the display is not correct. This is a bug that requires an improvement of the algorithm.
* [svn-r13132] Pedro Vicente Nunes2007-01-101-0/+32
| | | | Fixed #720 h5dump: improve how region references are displayed. h5dump now uses the new API function H5Rget_name to display the name of the dataset referenced instead of its ID. Added a case to the script test file
* [svn-r13075] Description:Quincey Koziol2006-12-194-1667/+1667
| | | | | | | | Fix display order of attributes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13064] Pedro Vicente Nunes2006-12-1411-310/+450
| | | | | | | | | | | | | | | | | | | Fix several bugs 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by Position of I(z,y,x) = index_z * size_y * size_x + index_y * size_x + index_x And pass that position to the function that dumps data, h5tools_dump_simple_data. 3) several index counters were declared as int, use hsize_t instead 4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
* [svn-r13042] Pedro Vicente Nunes2006-12-1119-0/+129
| | | | | added a size of array information when printing differences modified print_pos and diff_datum for having one extra argument *dims
* [svn-r13032] Pedro Vicente Nunes2006-12-071-4/+4
| | | | introduced a new macro PDIFF to calculate differences for unsigned types
* [svn-r13003] Pedro Vicente Nunes2006-12-011-4/+4
| | | | | | | | Cleaned warnings h5diff_array.c:804: warning: passing arg 1 of `fabs' as floating rather than integer due to prototype introduced double precision arithmetic when possible instead of single precision
* [svn-r12986] remove and insert these files, somehow their end of line ↵Pedro Vicente Nunes2006-11-273-0/+1060
| | | | terminator is not correct
* [svn-r12985] Pedro Vicente Nunes2006-11-273-1060/+0
| | | | remove and insert these files, somehow their end of line terminator is not correct
* [svn-r12984] Pedro Vicente Nunes2006-11-2722-221/+250
| | | | | | | Added a relative error formula to deal with floating point uncertainty in the comparison of floats and double types. Added new tests for this feature to the file generator program and to the shell script
* [svn-r12980] Pedro Vicente Nunes2006-11-2718-18/+18
| | | | | changed the usage message relative to the relative error formula to a more common and easy to understand form | (b-a) / a |
* [svn-r12917] Pedro Vicente Nunes2006-11-1516-0/+0
| | | | | | | | h5repack revision: 1. added a new test due to the introduction of H5Ocopy in the copy of objects (compressed dataset with references, that still must go a second sweep of the file to be regenerated). 2. Moved all the source files from the h5repack test program to a new file h5repacktst.c and removed the old ones (testh5repack*.c). 3. Renamed the binary files from test*.h5 to h5repack*.h5 for easy reference. 4. Modified the shell script to use variables for file names instead of hard coded names
* [svn-r12883] Pedro Vicente Nunes2006-11-084-10/+17
| | | | | | h5dump bug 701. Symptom: The creation of a hardlink pointing to the root group "/" causes h5dump to display it as a link pointing to itself. Cure: the root group was not being inserted in the table that keeps track of object names and links. Added a test for this in the test generation program, the creation of a hardlink to the root
* [svn-r12826] Pedro Vicente Nunes2006-10-303-9/+6
| | | | | added a new test for h5diff relative error for the file generator program
* [svn-r12819] Pedro Vicente Nunes2006-10-265-17/+22
| | | | | | | h5diff: print a message of "not comparable" in a case where the relative error compare is not possible, due to the denominator being zero. Modified the test file generator program to include a example for this and a new test on the shell script
* [svn-r12815] Pedro Vicente Nunes2006-10-2576-80/+1118
| | | | | | | | | | | | | | 1) added a new parameter to the h5diff function diff_array that contains the beginning position of the hyperslab, so that the total position in the array is printed correctly when reading by hyperslabs. 2) added a new test to h5diff that reads and diffs by hyperslabs. The test reads a 1GB dataset, from which a 1KB hyperslab was written with differences . 3) added the generation of 2 files to the generator program to test the h5diff hyperslab read. 4) changed the h5diff binary pre-generated file names to be more descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5) 5) changed the name of the h5repack options text file to info.h5repack
* [svn-r12784] Pedro Vicente Nunes2006-10-191-0/+0
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12772] Pedro Vicente Nunes2006-10-171-0/+0
| | | | added more tests for h5copy (compressed datasets, vl named datatypes )
* [svn-r12762] Pedro Vicente Nunes2006-10-161-5/+4
| | | | rewrote the -b option to make it more clear
* [svn-r12743] Took out printout for driver information because the driver ↵Raymond Lu2006-10-112-2/+0
| | | | | | used can be different from the driver used for standard output.
* [svn-r12742] Updated this output for a new driver "direct" has been added.Raymond Lu2006-10-111-1/+1
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* [svn-r12736] Description:Quincey Koziol2006-10-0921-50/+50
| | | | | | | | | | | | | | | | | | | Add "use the latest format" support for dataspace object header encode/ decode routines and clean up format a bit for the latest format (new to 1.8.x releases) Remove storing 'perm' parameter for array datatypes in memory and the file, and add test to make certain that if any user applications are attempting to store them, we get some reports back. (Should be unlikely, since the RefMan says that the parameter is not implemented and is unsupported). Carry those changes into the tests, etc. Clean up a bunch more compiler warnings. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-1.6-compat
* [svn-r12726] Pedro Vicente Nunes2006-10-061-0/+0
| | | | added calls for the scale offset filter to the h5repack test script
* [svn-r12722] Pedro Vicente Nunes2006-10-051-0/+0
| | | | added new tests for h5copy script, generated in the test file generator program
* [svn-r12713] Pedro Vicente Nunes2006-10-035-10/+10
| | | | | | added new tests with different datatypes for h5dump binary output tested: kagiso
* [svn-r12707] Description:Quincey Koziol2006-10-0211-3/+3
| | | | | | | | | Further minor modifications to the file format for tracking links in groups. This is tentatively the "final" file format for groups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12700] Alert:Quincey Koziol2006-10-0213-47/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12687] reverted back some changes that inadvertedely added some ↵Pedro Vicente Nunes2006-09-2642-42/+0
| | | | | | | | output to the parallel part of h5diff tested : heping parallel
* [svn-r12684] Pedro Vicente Nunes2006-09-261-1/+1
| | | | corrected usage message to have an example of the new binary parameters
* [svn-r12683] Pedro Vicente Nunes2006-09-266-20/+20
| | | | | | | | | | | | | | | | | | revised binary flags, added a new file to the test generator program to be used in the binary tests usage is now -o F, --output=F Output raw data into file F -b F, --binary=F Binary output, of form F (into file -o F). Recommended usage is with --dataset=P Form F of binary output is: MEMORY for memory type, FILE for the disk file type, LE or BE for pre-existing little or big endian types example ./h5dump -d integer -b MEMORY -o out.bin tbinary.h5
* [svn-r12678] bug fixPedro Vicente Nunes2006-09-2542-0/+42
| | | | | the number of atribute differences was not added to the total sum of differences
* [svn-r12675] Pedro Vicente Nunes2006-09-201-8/+13
| | | | | added a new output file for the case of missing file name, conforming to the new usage message
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