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* [svn-r14051] Pedro Vicente Nunes2007-08-072-6/+2
| | | | | | Make the compare to itself file test be another due to the recently introduced file with Nans Tested: linux, solaris
* [svn-r14048] Pedro Vicente Nunes2007-08-074-160/+221
| | | | | | Added a dataset with NaN values to the h5diff file generator program and new binary file Tested: linux
* [svn-r14044] Pedro Vicente Nunes2007-08-071-1/+1
| | | | | | updated the usage message to say the STR option is implemented tested: windows, linux
* [svn-r14039] Pedro Vicente Nunes2007-08-076-3/+209
| | | | | | | | | | | | | New feature: implementation of h5import conversion of an ASCII plain-text file containing text data The string type H5T_C_S1 is used to define the data (the datum is defined here as one line of text in the text file). The size is set to variable length (H5T_VARIABLE) The space used is a 1D array with as many elements as there are lines in the ASCII file (a line is defined by the inclusion of an end of line character, ASCII number 10). A first traversal of the input text file must be made to determine the number of lines in the file and thus the dimensionality of the dataset. New test to the test script added text input files and teststr.h5 for h5dump to compare added Tested: windows, linux, solaris
* [svn-r14023] Purpose:Vailin Choi2007-07-2722-37/+961
| | | | | | | | | | reorganization. Description: move the h5stat tool into its own directory. Platform tested: kagiso.
* [svn-r14001] Pedro Vicente Nunes2007-07-231-1/+1
| | | | | | fixed comments tested: linux
* [svn-r14000] Pedro Vicente Nunes2007-07-231-2/+2
| | | | | | | bug fixes: help message had incorrections, typos tested: linux
* [svn-r13999] Pedro Vicente Nunes2007-07-231-279/+279
| | | | | | | purpose: bug 791 redirect help output to stdout rather to stderr tested: windows, linux
* [svn-r13998] Pedro Vicente Nunes2007-07-231-3/+3
| | | | | | typo fixes in error messages tested: linux
* [svn-r13984] Description:Quincey Koziol2007-07-176-527/+423
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13980] Cast num_objs, num_attrs and dims to "size_t" due to the ↵Vailin Choi2007-07-141-4/+11
| | | | | | -Mbounds problem of the pgi-32 bit on indexing.
* [svn-r13979] purpose:Vailin Choi2007-07-135-0/+230
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13978] purpose:Vailin Choi2007-07-138-74/+346
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13975] Add --latest, -compact=<size>, ... options to use the lastest ↵Peter Cao2007-07-135-6/+210
| | | | | | file format. Add test for the options to the daily test.
* [svn-r13972] Description:Quincey Koziol2007-07-1310-0/+10
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-1210-0/+10
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13948] Description:Quincey Koziol2007-07-052-2/+2
| | | | | | | | | Make h5dump more gracious and informative about objects it doesn't understand. Tested on: Mac OS X/32 10.4.10 (amazon) No need for h5committest - very minor
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-2910-29/+19
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13926] Description:Quincey Koziol2007-06-291-2/+2
| | | | | | | | | | | | Add small interface to "wrap" a static buffer (usually on the stack), but still allow for buffers larger than the static buffer to be allocated. This can eliminate _many_ short-lived buffer allocations in situations where the buffer is a predictable size (or at least a "very likely" size). Also, some minor code cleanups, particularly in the SOHM caching code. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-2810-19/+32
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13914] Description:Quincey Koziol2007-06-264-1/+26
| | | | | | | Clean up files generated during testing. Tested on: Linux/32 2.6 (chicago)
* [svn-r13905] Purpose:Albert Cheng2007-06-251-43/+45
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The "h5dump -o ..." test generates temporay files in the testfiles of the source code and later on remove them. This could cuase a racing condition if more than one --srcdir build is using the same copy of the source code. Since they use the same file name in the testfiles, they may conflict with each other. Solution: Changed to generate the temporary files in the build-dir's own testfiles directory. Since the build-dir can have different names, the CMP of expected output now skip the first three lines which are label lines that contains the location of the temporary. Also removed the CREATE code since actual files created now cannot be blindly copied to the expect files. Also, expected files should be create by explicit action and careful inspection of files generated. Tested platform: Done in kagiso, both by --src-dir and in-place build.
* [svn-r13894] Description:Scott Wegner2007-06-203-4/+4
| | | | | | | | | | | On Windows, Mingw interprets all parameters starting with '/' as paths, and replaces the '/' with its home directory, "C:\Windows\msys\". This was a problem in h5diff tests such as: h5diff h5diff_101.txt $FILE1 $FILE1 /g1/d1 g1/d2 -v I've removed the leading '/', as h5diff will interpret it the same either way. Tested: kagiso, linew, and smirom, via h5committest mingw on Windows XP
* [svn-r13874] Pedro Vicente Nunes2007-06-184-10/+9
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13850] Description:Quincey Koziol2007-06-111-0/+4
| | | | | | | | | | | Hook "default VFD" configure macros into library. Also, make "default VFD" default to sec2 instead of nothing. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-0810-10/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13845] Description:Quincey Koziol2007-06-081-31/+32
| | | | | | | Formatting cleanups Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-0710-0/+10
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
* [svn-r13829] Some systems (only SGI Altix ProPack 4 discovered so far) ↵Raymond Lu2007-06-0210-0/+10
| | | | | | | | | | | | doesn't return correct file size from MPI_File_get_size. Bypass this problem by replacing it with stat. Add an option --disable-mpi-size in configure to indicate this function doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong file size, print out a warning. Tested on kagiso (parallel) because already tested the same change to v1.6 on several platforms (kagiso, cobalt, copper, and sol).
* [svn-r13815] Description:Quincey Koziol2007-05-2910-0/+20
| | | | Regenerate configuration files after latest checkin
* [svn-r13810] Pedro Vicente Nunes2007-05-244-18/+56
| | | | | | | | Minor tunings to output verbose messages: 1)when there is not a filter request do not print a message saying the filter was not apllied when the dataset was too small 2) avoid printing the message that has a list of objects to modify when there is none Tested:linux
* [svn-r13805] Pedro Vicente Nunes2007-05-244-3/+6
| | | | | | Early detection of no arguments, print usage and exit Tested: linux
* [svn-r13793] Pedro Vicente Nunes2007-05-223-11/+16
| | | | | | | | Clean temporary test files Tested: linux, SunOS Note: the files outside tools were generated by bin/reconfigure
* [svn-r13775] Pedro Vicente Nunes2007-05-214-19/+109
| | | | | | | Modified the current h5dump test script to use h5import/h5diff calls to validate the binary output. At this moment it can only be used with the native test, since h5import does not deal with input endianess. tested: linux, sunos 5.10
* [svn-r13766] In Visual Studio 2005 for 64-bit, _WIN32 is defined, but not ↵Scott Wegner2007-05-187-27/+27
| | | | | | | WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform. Tested: Visual Studio (32- and 64-bit) on Win XP
* [svn-r13760] This will only affect windows platform,MuQun Yang2007-05-161-6/+6
| | | | | | | change _int64 to __int64 within windows macro. Windows can tolerant _int64 but mingw cannot. So we need to use __int64 to make HDF work on Mingw. Compiled at linux and Mingw.
* [svn-r13757] Pedro Vicente Nunes2007-05-164-49/+111
| | | | | | | | | | | h5repack and h5diff hyperslab I/O changed the limit on which hyperslab I/O is done from 1GB to 128MB h5repack currently tests this feature by defining a dataset with dimensions of 128MB + 1byte (the datum being 1 byte integer), in which a 1Kb hyperslab was written. tested: linux there were some errors in running the tests, but these were in the library, due to a recent check-in that will be fixed shortly (at least we hope :-) )
* [svn-r13745] Description:Quincey Koziol2007-05-101-1/+1
| | | | | | | | | | | | Take further advantage of the readers/writer locking in the metadata cache and push the locking of the local heap up to the routines which call B-tree routines, which should drastically lower the number of metadata cache protect/ unprotect calls. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13720] Pedro Vicente Nunes2007-05-011-1/+1
| | | | | | | | Bug fix The parsing routine -b was not correctly affecting one of the variables that sets the binary output Tested linux
* [svn-r13648] Description:Quincey Koziol2007-04-128-59/+61
| | | | | | | | | | Rename new error handling API routines from H5E<foo>_stack() to H5E<foo>2(). Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13647] Purpose:Albert Cheng2007-04-111-2/+9
| | | | | | | | | | | | bug fix. Description: If a non-existing or empty source file is used with -c option, the script ended up doing nothing and exit 0--a false success. Changed code so that it would do compile and end in error. Tested: Kagiso.
* [svn-r13636] Description:Quincey Koziol2007-04-115-20/+14
| | | | | | | | | | | | | | Change H5[D|G|T]<foo>_expand() "temporary" API routines to H5[D|G|T]<foo>2() "versioned" routines. Also added H5[D|G|T](create|commit)_anon() routines to continue to allow "anonymous" objects to be created in a file. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13616] This check-in updates the bin/reconfigure file to point to the ↵Mike McGreevy2007-04-0910-776/+639
| | | | | | | | most recent versions of the autotools. Updated autotool versions are: autoconf 2.61, automake 1.10.0, and libtool 1.5.22. Tested on kagiso.
* [svn-r13589] Pedro Vicente Nunes2007-04-0415-279/+259
| | | | | | h5repack code cleaning (required reconfigure) tested: linux (32, 64, parallel), solaris
* [svn-r13582] Pedro Vicente Nunes2007-04-033-16/+13
| | | | | | | | Bug fix Substitute a malloc call for a calloc call while allocating a reference buffer Add a test for an empty reference case Tested linux
* [svn-r13580] Description:Quincey Koziol2007-04-0311-71/+59
| | | | | | | | | | | | Add version # and flags to external link format (as fields in a single byte), in order to accomodate future changes/expansions. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13578] Pedro Vicente Nunes2007-04-031-1/+1
| | | | | | Cast a malloc call to the correct type Tested linux
* [svn-r13576] Pedro Vicente Nunes2007-04-031-1/+1
| | | | | | | | bug fix a call was made to printf instead of parallel_print tested linux parallel
* [svn-r13573] Pedro Vicente Nunes2007-04-027-21/+98
| | | | | | | | | | | | Bug fixes Reset external file list slots name_offset to a state when created (0) in H5P_dcrt_copy so that it conforms to an assertion in H5D_update_entry_info that assumes the name_offset is 0 at this point this fixes the problem of h5repack and external files, add a new test and files for an external file h5diff, check for an error return in H5D_get_storage_size tested linux 32, 64
* [svn-r13549] Description:Quincey Koziol2007-03-272-12/+14
| | | | | | | | | Check in changes from Elena and I to get pgcc compiler working again. Primarily (all?) changes to move from using 'hsize_t' as array index to using something else ('size_t') mostly. Tested on: Linux/32 2.4 kagiso w/pgcc
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