| Commit message (Collapse) | Author | Age | Files | Lines |
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Bring r16982:16997 from trunk into revise_chunks branch.
Tested on:
Mac OS X/32 10.5.7 (amazon)
h5committest not needed on this branch
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Merge r16960:16975 from trunk into revise_chunks branch.
Tested on:
Mac OS X/32 10.5.7 (amazon)
(h5committest not required on this branch)
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Bring r16821:16875 back from trunk to revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring revisions 16636:16821 from trunk to revise_chunks branch
Tested on:
FreeBSD/32 6.3 (duty)
Mac OS X/32 10.5.6 (amazon)
(h5committest not needed on this branch)
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Bring r16618:16633 back from trunk to revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring r16606:16618 from trunk to the revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty)
h5committest not necessary on this branch
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Bring r16536:16600 from trunk back into revise_chunks branch
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Merge r16500:16536 from trunk into revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Merge r16440:16500 from trunk into revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring r16412:16440 from trunk into revise_chunks branch.
Tested on:
FreeBSD/32 6.3(duty)
(h5committest not required on this branch)
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Bring r16395:16402 back from trunk (and adjust slightly for layout
version changes).
Tested on:
FreeBSD/32 6.3 (duty)
(h5committest not required on this branch)
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Bring r16367:16391 back from trunk into revise_chunks branch.
Tested on:
FreeBSD 6.3/32 (duty)
(h5committest not required on this branch)
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Bring r16347:16367 from trunk into revise_chunks branch.
Tested on:
FreeBSD/32 6.3 (duty)
(h5committest not required on this branch)
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Bring r16307:16347 back from trunk into revise_chunks branch
Tested on:
FreeBSD/32 6.3 (duty)
(h5committest not required on this branch)
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Refactor internal layout information, making it easier to add another
type of chunk index.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring revisions 16280:16307 back from trunk.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring revisions 16206:16218 back from trunk
Tested on:
Mac OS X/32 10.5.6 (amazon)
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Rename internal routines, variables, macros, typedefs, etc. for chunked
dataset storage from "istore" to some variant of "chunk" or "btree".
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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tested: windows, linux
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currently as the same size of hyperslab (that compares the dimension sizes against a predefined constant size and chooses the minimum between the two)
Tested : linux, windows
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h5diff return value (not done for 1.8)
* Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008
* Compare the graph and make h5diff return 1 for difference if
* 1) the number of objects in file1 is not the same as in file2
* 2) the graph does not match, i.e same names (absolute path)
* 3) objects with the same name are not of the same type
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difference is found instead of a non-existing array position
Tested: windows
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When -b was requested and no -o (file name) binary output was made to stdout
Had a check after command line parsing to verify if -o is present, otherwise exit
Tested: windows, linux
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Merge with 1.8 rev 15985
reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code
Tested: linux
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make -b accept both MEMORY and NATIVE
Tested: linux
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Introduced a new feature in the tools library regarding command line parsing
In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory)
Used for the h5dump binary option -b
It can be now
1) -b (defaults to NATIVE)
2) - b NATIVE
3) - b FILE
4) -b LE
5) -b BE
Note: the keyword NATIVE replaces MEMORY
This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files
Tested: linux
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regarding the return value of h5diff (0, no difference in files, 1 difference )
objects with the same name must be of the same type
tested: linux
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Regarding use of unsigned long long print format
Tested: linux
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Regarding h5diff, h5copy
Tested: linux
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Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status
tested: linux
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tested: linux
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long long)
tested: windows, linux
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Description:
- Remove need to set LD_LIBRARY_PATH when using shared szip library.
- Libtool 2.2.6a is now used to generate libraries.
- 'make check install' dependency bug is fixed, and should no longer
break the build.
- removed hard coding of shell in config/commence.am, as this causes
problems on Solaris with the new version of libtool.
- RELEASE.txt with appropriate changes.
Tested:
- kagiso, smirom, linew (merged from 1.8, pretty quick tests)
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Description: Improved external link traversal of h5dump. h5dump will now
properly avoid all cycles, even those spanning multiple files. Improvement
to the output of committed datatypes. Committed datatypes are now checked
for uniqueness (like other objects). Tests added for these cases.
Tested: kagiso, linew, smirom (h5committest)
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The custom rules for installing h5cc, h5fc, and the fortran modules in fortran
and in hl/fortran don't use $(DESTDIR). Added it to all those rules.
Tested: kagiso both serial and parallel with fortran and cxx enabled.
Tested by:
make install
make DESTDIR=/tmp/acheng install
diff -r /tmp/acheng/.../hdf5 hdf5
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1. Fixed segmentation fault in print_group_info()
2. Call print_statistics() in main() when objects/links are successfully traversed;
otherwise, return warning message.
line, and those below, will be ignored--
M h5stat/h5stat.c
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Description: Added -E option to h5ls. When set, this alows h5ls to enter
external files (currently only through an external link). The -r option by
itself will no longer allow h5ls to traverse external links.
Tested: kagiso, linew, smirom (h5committest)
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option was not taken in consideration when printing the compression ratio
Tested: windows, linux
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Add support for extensible array "super block".
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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windows shell script only Note: for the unix shell script this file is not used
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make a test generate a LE output for test portability
tested: linux, solaris
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The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted.
Solution:
remove TEXTFPE from the help system and have the TEXTFPE input type do
the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f)
added a test
tested: windows, linux
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tested: windows, linux
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Centralize all macros for declaring "magic numbers"/signatures for
objects in the file into src/H5Fprivate.h, so it's easier to know what values
have already been defined, etc.
Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Add base support for extensible array "data blocks" to code, tests and
h5debug.
Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Description: Adds capability to h5ls to traverse external links when the -r
(recursive) option is given. Changes to the way absolute path names are patched
in h5trav.c. Changes to the way recursive traversal starting from a non-root
group is handled (which also fixes some preexisting issues). Tests added for
these cases.
Tested: kagiso, smirom, linew (h5committest)
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tested: linux
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tested: windows, linux
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Bug fix: do not print print compression ratio when the requested filter is NONE
Tested: windows, linux
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Bug fix: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call
Tested: windows, linux
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