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* [svn-r29694] HDFFV-9756,9766,9719:Allen Byrne2016-04-1421-99/+397
| | | | | | 9756-fix h5diff VDS 9766-fix h5repack VDS 9719 - reconcile tools differences
* [svn-r29497] Merge of r26492 from revise_chunksDana Robinson2016-03-221-6/+6
| | | | | | Changes some Visual Studio #ifdefs to Win32. Fixes MinGW issues. Tested on: 64-bit Windows 10 w/ Visual Studio 2015 Pro
* [svn-r29381] Re-ran autogen.sh on THG machines to update autotools outputDana Robinson2016-03-0914-0/+14
| | | | | | | | files. Added java Makefile.in files. Tested on: jam
*-. [svn-r29378] Bring alpha2 in line with revise_chunks (up to r29365)Dana Robinson2016-03-0962-471/+1331
|\ \ | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran autotools parallel w/ Fortran CMake serial w/ C++ and Fortran
| | * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-23/+23
| | | | | | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| | * [svn-r28918] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28885] Change TOOLTEST5 to TOOLTEST3, which does not post-process the ↵Allen Byrne2016-01-131-1/+1
| | | | | | | | | | | | files.
| | * [svn-r28868] HDFFV-9639: autotools script updateAllen Byrne2016-01-121-30/+35
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| | * [svn-r28865] HDFFV-9639: Fix double-free error by setting freed var to NULL.Allen Byrne2016-01-124-44/+91
| | | | | | | | | | | | | | | Verified issue with "h5dump tgroup.h5 non_existing.h5" Applied patch and retested.
| | * [svn-r28769] Description:Quincey Koziol2016-01-031-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28761] Description:Quincey Koziol2016-01-011-4/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28742] Description:Quincey Koziol2015-12-291-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-171-16/+8
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| | * [svn-r28669] Changes to correct errors found with -ansi flag.Larry Knox2015-12-151-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | h5tools_dump.c Removed 3 lines commented out with //. h5_vds-percival-unlim.c Changed C++-style comment to C-style comment. Tested with h5committest.new.
| * | [svn-r29291] Merge of r29226-29259 from trunk.Dana Robinson2016-03-0620-234/+174
| | | | | | | | | | | | | | | | | | | | | Mostly java JNI + a few smaller merges. Tested on: h5committest.new jam w/ java
| * | [svn-r29289] Merge of r29222, 29261, 29270, 29272, 29274, 29275 from trunkDana Robinson2016-03-0630-139/+555
| | | | | | | | | | | | | | | | | | | | | tools patches Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
| * | [svn-r29282] Merge of r29081 from trunk (phdf5_metadata_opt branch merge)Dana Robinson2016-03-061-23/+23
| | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r29253] Merge of r29057 from trunk (dxpl checks in debug builds)Dana Robinson2016-03-031-28/+28
| | | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran bin/cmakehdf5 (CMake 3.3.2)
* | | [svn-r29225] Re-ran autogen.sh on THG machines to update autotools outputDana Robinson2016-02-2914-0/+14
| | | | | | | | | | | | | | | | | | files. Tested on: jam
* | | [svn-r29224] Brought alpha2 branch in sync with revise_chunks (up to r29219)Dana Robinson2016-02-2991-690/+2833
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | Note: generated autotools files are from a VM and not THG machines. These will be updated immediately after check-in. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (cmakehdf5 w/ CMake 3.3.2)
| * | [svn-r29206] Merge h5dump VDS support from trunk:Dana Robinson2016-02-2529-139/+1244
| | | | | | | | | | | | | | | | | | | | | | | | | | | r29186, r29190, r29198 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial cmakehdf5 (CMake 3.2.2) chkmanifest
| * | [svn-r29048] Fix to h5format_convert tool:Vailin Choi2016-02-0545-453/+1470
| | | | | | | | | | | | | | | | | | (1) Downgrade layout version to 3 for contiguous and compact dataset (2) Add new test files for testing with/without messages in superblock extension. Tested on jam, osx1010test, platypus, quail, ostrich, kite, moohan, kituo, mayll, emu.
| * | [svn-r29014] h5format_convert(): fix to downgrade superblock version and ↵Vailin Choi2016-01-297-36/+14
| | | | | | | | | | | | | | | | | | | | | | | | persistent file space so 1.8 library can open/read the file. Tested on ostrich, kituo, platypus, moohan, quail, emu. More tests will be added later.
| * | [svn-r28940] Merge revision #28852 from hdf5_1_10_alpha1 to revise_chunks.Vailin Choi2016-01-208-2/+62
| | | | | | | | | | | | | | | | | | This is the fix to downgrade superblock version for the tool h5format_convert so DLS can use 1.8 h5dump on the converted file. Tested on jam, platypus, moohan, osx1010test.
| * | [svn-r28920] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r28918 from trunk to the revise_chunks branch: I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28889] Merge of r28865, 28866, 28868, 28885 from trunk (h5dump bugfix).Dana Robinson2016-01-135-74/+126
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| * | [svn-r28770] Description:Quincey Koziol2016-01-031-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r28769 from trunk to revise_chunks branch: More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28762] Description:Quincey Koziol2016-01-011-4/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bring r28761 from the trunk to the revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28744] Description:Quincey Koziol2015-12-291-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r28742 from trunk, adjusting to shadow B-tree nodes for SWMR: Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28698] Minor normalization with trunk.Dana Robinson2015-12-171-7/+2
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28692] Merge of r28669 from trunk. Minor // comment removal.Dana Robinson2015-12-161-3/+0
| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28605] Description:Quincey Koziol2015-12-131-0/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28490] Cleaned up some warnings in the VDS test code.Dana Robinson2015-12-039-11/+11
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28456] Merge 28371, 28377, and 28403 from trunk. (CMake changes)Dana Robinson2015-11-241-24/+24
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28433] Misc warning and cleanup fixes.Dana Robinson2015-11-214-21/+26
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28431] Misc warning and cleanup fixes.Dana Robinson2015-11-206-246/+214
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28426] Fixed all maybe-uninitialized warnings from gcc 5.2.Dana Robinson2015-11-201-5/+5
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28423] Description:Quincey Koziol2015-11-201-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against trunk. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28410] Removed a few TRUE/FALSE redefinitions in the tools.Dana Robinson2015-11-193-7/+0
| | | | | | | | | | | | | | | Tested on Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * | [svn-r28330] Implementation for version 3 superblock and latest version support.Vailin Choi2015-11-1311-255/+205
| | | | | | | | | | | | Tested on quail, kite, osx1010test, platypus, ostrich, moohan, emu, jam.
| * | [svn-r28218] Merge of r28138, 28196, and 28204 from trunk.Dana Robinson2015-10-264-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | hbool_t changes Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial w/ Fortran and C++ parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r28216] Merge of r27969:28132, 28144:28193 from trunk.Dana Robinson2015-10-261-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Mostly CMake changes, but there's also a few minor library changes. Temporarily commented out the accum test. The test builds but one of the sub-tests fails due to a file issue. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial w/autotools serial w/CMake (3.3.2, w/ fortran and C++)
| * | [svn-r28214] Merge of r28075, 28086, 28115, 28151 from trunk.Dana Robinson2015-10-261-0/+0
| | | | | | | | | | | | | | | Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial and parallel (MPICH 3.1.4)
| * | [svn-r28206] 1) Implementation for Single Chunk indexing type.Vailin Choi2015-10-2315-51/+73
| | | | | | | | | | | | 2) Fix for changing h5format_convert testfiles for in-place build.
| * | [svn-r28099] Description:Quincey Koziol2015-10-1687-109/+5435
| | | | | | | | | | | | | | | | | | | | | | | | Bring r27958 from trunk to branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28094] Description:Quincey Koziol2015-10-167-209/+202
| | | | | | | | | | | | | | | | | | | | | | | | Bring r27849 & 27851 from trunk to branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28093] Merge of r27768 and r27774 from trunkDana Robinson2015-10-1613-55/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial and parallel (MPICH 3.1.4)
| * | [svn-r28092] Description:Quincey Koziol2015-10-165-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Merge the storage message back into the layout message. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28049] Merge of r27997-28047 from the trunk.Dana Robinson2015-10-131-4/+4
| | | | | | | | | | | | | | | | | | Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) gcc 4.9.2 serial w/ Fortran and C++ parallel (MPICH 3.1.4) w/ Fortran
| * | [svn-r28043] Description:Quincey Koziol2015-10-121-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | Merge r27818 from trunk to branch. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)