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* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-3121-840/+5005
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24895] Add INTERFACE properties to libsAllen Byrne2014-03-251-1/+4
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* [svn-r24869] Description:Quincey Koziol2014-03-232-106/+96
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24864] Description:Quincey Koziol2014-03-2113-84/+24
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r24859] Remove unnecessary use of $(srcdir).before_removing_mpiposix_vfdAllen Byrne2014-03-212-12/+6
| | | | Tested: local linux, h5committest
* [svn-r24826] HDFFV-8700 -Allen Byrne2014-03-181-3/+3
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24824] HDFFV-8700 -Allen Byrne2014-03-1810-27/+124
| | | | | | | | KitWare recommendations: Change CMake commands to lower case. Bump up CMake minimum versions. Split test file into separate file for h5repack test. Tested: local linux
* [svn-r24804] Description:Quincey Koziol2014-03-164-78/+55
| | | | | | | | | | | | | | | | | | | | | | | | Brought changes from Coverity branch back to trunk, and cleaned up misc. other warnings & formatting issues: r20833: Fixed Coverity 667 and 668 with real integer overflow tests this time. r20834: Use HDstrncpy and HDstrncat. --gh r20835: Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159 r20836: Fixed coverity 585 by casting output of fgetc() to a char. r20837: Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r24803] Description:Quincey Koziol2014-03-164-56/+22
| | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
* [svn-r24789] Bump up the minimum cmake versionAllen Byrne2014-03-1310-10/+10
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* [svn-r24782] HDFFV-8700 -Allen Byrne2014-03-1117-356/+356
| | | | KitWare recommendations: Change CMake commands to lower case.
* [svn-r24781] HDFFV-8700 -Allen Byrne2014-03-1122-1000/+1000
| | | | | | | KitWare recommendations: Change CMake commands to lower case. Remove INCLUDE_DIRECTORIES in src for target level includes. Change ADD_DEFINITIONS package debug defines into CMake option. Remove -DNDEBUG
* [svn-r24726] Description:Quincey Koziol2014-02-203-68/+83
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24725] HDFFV-8629: h5repack will not attempt to remove UD filters. ↵Allen Byrne2014-02-202-145/+146
| | | | | | h5repack requires a check for UD filters that also must check if the filter can be dynamically loaded. This require a change in the library that checks for this. Tested: locally and reviewed
* [svn-r24682] Add IF SHARED block around Windows PDB file generation command.Allen Byrne2014-02-041-2/+3
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* [svn-r24670] HDFFV-8567: Fix cmake tests for changes in reference files due ↵Allen Byrne2014-01-312-23/+23
| | | | | | to test script changes in autotools test scripts. Tested: local linux
* [svn-r24666] Fix test folder deletion issueAllen Byrne2014-01-305-50/+72
| | | | Tested: local linux autotools
* [svn-r24646] HDFFV-8640: Remove xlate_utility by fixing reference files to ↵Allen Byrne2014-01-2733-98/+2
| | | | | | not add extra lines. Tested: cmake and autotools local linux
* [svn-r24504] HDFFV-8629: disable test until review is completeAllen Byrne2013-12-051-1/+1
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* [svn-r24487] HDFFV-8629: repack plugin_none test files.Allen Byrne2013-12-034-0/+147
| | | | CMake only until library updates approved.
* [svn-r24484] Update version and test name.Allen Byrne2013-12-021-2/+3
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* [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that ↵Allen Byrne2013-12-024-420/+54
| | | | | | have szip compression. Tested local linux with cmake and autotools
* [svn-r24481] HDFFV-8635: disable test because of szip causing different read ↵Allen Byrne2013-12-021-4/+5
| | | | call then expected.
* [svn-r24480] Description:Quincey Koziol2013-11-303-148/+153
| | | | | | | | | | | Bring r24479 from 1.8 branch to trunk: Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel (too minor to require h5committest)
* [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests ↵Allen Byrne2013-11-2710-21/+2533
| | | | | | including the test to read filter data. Tested: cmake and autotools - local linux
* [svn-r24467] tfilters.h5 was created and checked in on 21 Feb 05, rev 10060, ↵Allen Byrne2013-11-263-3/+3
| | | | | | | | and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384. The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20). Regenerated file and replacement ddls updated. New h5dump test will be added to read the data.
* [svn-r24411] Correct file generationAllen Byrne2013-11-073-394/+405
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* [svn-r24408] Add compound integer tests filesAllen Byrne2013-11-066-0/+2008
| | | | Tested: local linux cmake
* [svn-r24403] Cleanup temp test filesAllen Byrne2013-11-041-2/+2
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* [svn-r24400] Maintenance: When the libraries are built and tested in place, ↵Elena Pourmal2013-11-034-4/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | several files are left behind by "make distclean" (see below); modified appropriate Makefile.am files and ran bin/reconfigure to create Makefile.in to fix the problem. Here is the list of the files "make disclean" doesn't remove: tools/h5dump/testfiles tools/h5repack/testfiles/h5diff_attr1.h5 tools/h5repack/testfiles/tfamily00000.h5 tools/h5repack/testfiles/tfamily00010.h5 tools/h5repack/testfiles/tfamily00002.h5 tools/h5repack/testfiles/tfamily00004.h5 tools/h5repack/testfiles/tfamily00006.h5 tools/h5repack/testfiles/tfamily00008.h5 tools/h5repack/testfiles/tfamily00001.h5 tools/h5repack/testfiles/tfamily00003.h5 tools/h5repack/testfiles/tfamily00005.h5 tools/h5repack/testfiles/tfamily00007.h5 tools/h5repack/testfiles/tfamily00009.h5 tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav tools/h5jam/testfiles/h5jam-help.txt.err-sav tools/h5jam/testfiles/h5unjam-help.txt.err-sav tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav tools/h5jam/testfiles/h5jam-help.txt.out-sav tools/h5jam/testfiles/h5unjam-help.txt.out-sav hl/fortran/test/dsetf5.h5 c++/test/tattr_multi.h5 c++/test/tattr_scalar.h5 c++/test/tfattrs.h5 c++/test/tattr_basic.h5 c++/test/tattr_compound.h5 c++/test/tattr_dtype.h5 Tested on jam and emu in place and using srcdir with the svn stat command. This fix doesn't address two problems: tool/h5dump/testfiles directory is not removed by "make distclean" and it should be tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-0115-8/+225
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-318-47/+47
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24285] Eliminate several "passing argument ... with different width ↵Larry Knox2013-10-102-14/+14
| | | | | | due to prototype" warnings by casting constants to size_t where expected by string functions. Tested on jam, koala,ostrich and platypus with h5committest.
* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-092-2/+3
| | | | tested with h5committest
* [svn-r24224] HDFFV-8529: Space separate define stringsAllen Byrne2013-09-303-8/+8
| | | | Tested: h5committest
* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-2411-0/+11
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24172] Position trunk/1.8 vars in similar location for comparison.Allen Byrne2013-09-191-3/+3
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* [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.Allen Byrne2013-09-192-13/+27
| | | | | | | Add more usage info for UserMacros. Add new option information about the Plugin default path. Tested: local linux, jam
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-136-23/+24
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r24137] Cast constants to specified type. Allen Byrne2013-09-131-35/+35
| | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Tested: local linux
* [svn-r24124] HDFFV-8345: Changed usage txt to use dsetN instead ofletters ↵Allen Byrne2013-09-112-79/+42
| | | | | | for objects in examples. Tested: local linux
* [svn-r24120] HDFFV-8345: plugin test properly checks static-exec result to ↵Allen Byrne2013-09-103-4/+6
| | | | | | include test. Tested: jam
* [svn-r24118] Comment out test until configure sets conditional correctlyAllen Byrne2013-09-091-1/+1
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* [svn-r24116] Correct indentation and create single exit point.Allen Byrne2013-09-094-3426/+3270
| | | | Tested : local linux
* [svn-r24115] Reduce warnings for conversions of different widths.Larry Knox2013-09-063-571/+571
| | | | h5committested on jam, ostrich, koala, and platypus.
* [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.Allen Byrne2013-09-0619-540/+2104
| | | | | | Reviewed in H5T-61 Tested: local linux - cmake and autotools
* [svn-r24101] Description:Quincey Koziol2013-09-055-33/+43
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24077] Updated -help output for compile scripts for changing default ↵Larry Knox2013-08-271-4/+6
| | | | | | from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static). Tested with h5committest on jam, koala, ostrich and platypus.
* [svn-r24066] Eliminate switch default warning by printing err message.Allen Byrne2013-08-232-10/+106
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* [svn-r24058] Coorect usage text wrt dataset subsettingAllen Byrne2013-08-229-9/+9
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