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* Check in files generated by autogen.sh for hdf5_1_10_5 release branch.Larry Knox2019-02-1626-0/+39194
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* TRILAB-111 Update MPI CMakeAllen Byrne2019-02-132-10/+10
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* Refactor TIMEOUT valuesAllen Byrne2019-02-061-1/+1
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* HDFFV-10697 Disable compression option if source unavailableAllen Byrne2019-02-051-4/+2
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* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-311-9/+16
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * Merge pull request #1480 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-281-1/+16
| |\ | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 * commit '2880ef43eb03526e7d75551720547b85e66a3086': Fixed HDFFV-10578
| * | Fix CMake policy 54 warningsAllen Byrne2019-01-181-9/+16
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* | | Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-2/+4
| |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* | Fixed HDFFV-10578Binh-Minh Ribler2019-01-151-1/+16
|/ | | | | | | | | | | Description: - HDFFV-10578 - CVE-2018-17234 Memory leak in H5O__chunk_deserialize() Actually, the leak was in h5tools_util. Applied Neil's fix. - Changed an assert to if/HGOTO_ERROR to fail gracefully. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* HDFFV-10669 merge from developAllen Byrne2018-12-311-2/+2
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* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-12-3111-138/+102
| | | | orginally intended to support the full SWMR feature (from develop).
* Merge CMake changes from developAllen Byrne2018-12-202-39/+74
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* Add H5I_INVALID_HIDAllen Byrne2018-12-151-1/+1
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* Tools cleanupAllen Byrne2018-12-133-108/+80
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* HDFFV-10632 separate stderr and stdout in testsAllen Byrne2018-12-1382-293/+527
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* Moved fixes for incorrectly installed header files to 1.10.Dana Robinson2018-12-061-12/+0
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* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-234-28/+49
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* Fix target for commandsAllen Byrne2018-11-091-2/+2
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* TRILAB-82 fix coverity high-impact issuesAllen Byrne2018-11-0818-576/+560
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* TRILABS: Merge CMake changes from developAllen Byrne2018-11-076-83/+95
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* Merge CMake changes from developAllen Byrne2018-10-231-1/+1
| | | Improved cross-compiling and toolchains
* HDFFV-10594, 10332, 10531Allen Byrne2018-09-269-108/+126
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* Update versionLarry Knox2018-09-051-7/+7
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* Fix Java library location for testingAllen Byrne2018-08-311-3/+0
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* Update system commands with HD prefix and whitespaceAllen Byrne2018-08-286-236/+236
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* Rearrange issues by date orderJordan Henderson2018-08-091-7/+7
| | | | | Update version. Update .so versions to match 1.10.3.
* Merge from developAllen Byrne2018-07-312-3/+3
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* Add swmr tests, fix java scriptAllen Byrne2018-07-274-1/+422
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* Revert Sencode h5dump testAllen Byrne2018-07-275-101/+0
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* Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-261-0/+2
| | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* Changes based on feedback from pull request.Vailin Choi2018-07-262-3/+2
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* Modifications made based on feedback from pull request.Vailin Choi2018-07-264-12/+31
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* Fix for HDFFV-10333:Vailin Choi2018-07-2616-132/+420
| | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-0419-54/+740
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| * Merge pull request #1043 in HDFFV/hdf5 from ↵Dana Robinson2018-05-311-0/+684
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop * commit '1da9c5545c013ebc540ba3044810889d4acfa5be': Restored some unused #defines to the deprecated section of H5Dpublic.h. Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers. Updated commenting in the H5DO compat test. Stripped out most of the duplicated functionality in the H5DO compat test. * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines. * Fixed the error tests * Moved common functionality into helper functions Normalize with trunk prior to update merge Fixed a warning. Finished move of H5DOread/write_chunk calls to H5D. First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| | * Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-05-1527-246/+205
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| | * \ Merge branch 'develop' into h5do_direct_chunk_hl_to_srcDana Robinson2018-04-3027-364/+280
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| | * | | First stage of moving H5DOread/write_chunk() to src/ and makingDana Robinson2018-04-301-0/+684
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-2322-52/+56
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * | | | | Changes made based on feedback from pull request #1039.Vailin Choi2018-05-1415-43/+42
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| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-1428-248/+211
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| * | | | | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-2418-54/+57
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* | | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-2222-52/+56
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| * | | | | Fix MPI on Windows by adding MPI include folderAllen Byrne2018-05-0922-52/+56
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* | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-1027-246/+205
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| * | | | Text cleanupAllen Byrne2018-05-082-42/+18
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| * | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-04-301-2/+6
| |\ \ \ \ | | | |_|/ | | |/| | | | | | | | | | | | | | | | | | | | | | * commit '1f8cb03e11a46f853881f45dac18eff2dd68401e': Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean') Further minor cleanups Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
| * | | | TRILABS-19 remove add_defintions and use generator expressionsAllen Byrne2018-04-2625-204/+187
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* | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-0853-628/+603
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| * | | Fix errors in Makefile.am files that cause "make check" to repeat test, evenQuincey Koziol2018-04-291-2/+6
| |/ / | | | | | | | | | | | | when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
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