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* [svn-r15292] moved h52jpeg to /hl/tools/h52jpegPedro Vicente Nunes2008-06-288-223514/+0
| | | | tested: linux
* [svn-r15291] Implementation of generating more use cases (datasets of ↵Pedro Vicente Nunes2008-06-273-24/+220
| | | | | | | | several types) for the test generator program and file Implementation of transforming 2D datasets with integer and float classes to 8bit acceptable by the jpeg library. tested: windows, linux
* [svn-r15280] code cleaning (for some reason svn has been duplicating blocks ↵Pedro Vicente Nunes2008-06-251-29/+0
| | | | of code)
* [svn-r15279] more code cleaningPedro Vicente Nunes2008-06-251-0/+15
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* [svn-r15278] code cleaning and commentsPedro Vicente Nunes2008-06-251-5/+19
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* [svn-r15277] added code for reading an image type from the command line Pedro Vicente Nunes2008-06-252-6/+35
| | | | | | added a new test run for the shell script with image name specified tested: windows, linux
* [svn-r15276] added the code for using an image name from the command linePedro Vicente Nunes2008-06-251-179/+250
| | | | tested: windows, linux
* [svn-r15251] Moved all h5copy testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-203-1/+1
| | | | | | tools/h5copy/testfiles tested: linux
* [svn-r15247] Moved all h5repack testfiles from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-2017-6/+6
| | | | | | tools/h5repack/testfiles tested: linux
* [svn-r15246] Changed the shell script to avoid doing a cd $srcdirPedro Vicente Nunes2008-06-2065-391/+96
| | | | | | | | | | | | The name of the files are now given by its full name relative to $srcdir To avoid the printing of the complete full path of the test file, that hides all the other parameters for long paths, the printing of the command line is done first in TESTING with the name only of the test file, not its full path the printing in the expected output that had the file name was removed as well as 3 tests that tested error messages in which the file name was present tested: linux (in 2 different build directories relative to $srcdir), solaris
* [svn-r15238] Pedro Vicente Nunes2008-06-1976-5/+6
| | | | | | Moved all h5diff testfiles from /tools/testfiles to tools/h5diff/testfiles Tested: linux, solaris
* [svn-r15225] added a function that calls the jpeg library and writes a jgeg ↵Pedro Vicente Nunes2008-06-171-12/+180
| | | | | | file for each HDF5 image tested: windows, linux
* [svn-r15222] moved the h52jpeg testfiles location from /tools/testfiles to ↵Pedro Vicente Nunes2008-06-172-10/+2
| | | | | | | | /tools/h52jpeg/testfiles updated the shell script accordingly tested: linux
* [svn-r15219] added a test file and a test scriptPedro Vicente Nunes2008-06-164-26/+126
| | | | | | | for now, the test script just calls the tool binary with the command line parameters, with no special checking of the accuracy of the output contents (jpeg files) tested: linux
* [svn-r15217] added a HDF5 file generator program that reads 2 realistic ↵Pedro Vicente Nunes2008-06-163-23/+221662
| | | | | | | | images from ASCII files, a true color and a gray color image the HDF5 file generated is used by h52jpeg to generate jpeg images tested: windows
* [svn-r15216] added code for the jpeg library to be linked in linux systemsPedro Vicente Nunes2008-06-162-4/+5
| | | | | | for now, just added "-ljpeg" to the list of libraries, until a permanent solution is added to configure --with-jpeg= that would allow users to specify their own jpeg libary tested: linux (kagiso, that has a jpeg library installed)
* [svn-r15190] added code to read datasets, concatenate output namesPedro Vicente Nunes2008-06-101-28/+120
| | | | tested: windows
* [svn-r15187] Purpose: Disabling h52jpeg directory from being built while ↵Mike McGreevy2008-06-102-2/+2
| | | | | | | | issues surrounding its location and its dependencies are worked out. Tested: kagiso
* [svn-r15184] added the configure and Makefile changes to build h52jpeg in ↵Pedro Vicente Nunes2008-06-095-6/+943
| | | | | | unix systems tested: linux, solaris
* [svn-r15183] Purpose: _WIN32 macro cleanupScott Wegner2008-06-095-32/+1
| | | | | | | | | | Description: As part of our Windows cleanup, we try to remove windows-specific tweaks in the source code. There are many instances where Windows code is introduces via ifdef's. We re-evaluate whether they are still required, and found that many of them are not. Others we change to "feature"-specific code, rather than Windows-specific. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagisopp, smirom, linew)
* [svn-r15178] added the routine h52jpeg that traverses the file in the same ↵Pedro Vicente Nunes2008-06-091-15/+168
| | | | | | way of h5diff/h5repack tested: windows
* [svn-r15150] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-058-33/+33
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
* [svn-r15143] Pedro Vicente Nunes2008-06-053-8/+16
| | | | | | | | | | Fix for #1169 http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1169 don't print attributes to stdout when doing binary output added an attribute to the file run on the binary output test tested: windows, linux
* [svn-r15133] Description:Quincey Koziol2008-06-044-41/+45
| | | | | | | | | | | | | | | | | | | Fixed bug in h5ls that prevented relative group listings (like "h5ls foo.h5/bar") from working correctly. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15131] Description:Quincey Koziol2008-06-031-1/+1
| | | | | | | | | | | | | | | | | | | | | | Finish omnibus chunked dataset I/O refactoring, to separate general actions on chunked datasets from actions that are specific to using the v1 B-tree index. Cleaned up a few bugs and added some additional tests also. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15124] Purpose:Albert Cheng2008-06-022-5/+16
| | | | | | | | | | | | | | bug fixes. Description: Added code to create an empty hdf5 (named h5diff_empty.h5) in order to test if h5diff compares correctly an empty hdf5 vs. a non-empty one. Tested: Tested in kagiso of h5diffgentest itself. Verified by h5dump that h5diff_empty.h5 was indeed empty. Then "h5diff h5diff_empty.h5 h5diff_basic1.h5" returned 0 (should have returned non-zero).
* [svn-r15122] command line parsing and usagePedro Vicente Nunes2008-06-021-0/+128
| | | | tested: windows
* [svn-r15117] added repo entries for the h52jpeg test generator programPedro Vicente Nunes2008-06-021-0/+4
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* [svn-r15099] location for h52jpegPedro Vicente Nunes2008-05-301-0/+4
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* [svn-r15052] Add a test for the 1.6.7 -i infile -o outifle for backward ↵Pedro Vicente Nunes2008-05-211-0/+37
| | | | | | | | compability Used the function TOOLTEST from 1.6.7 Tested: linux
* [svn-r15047] bug fix regarding change from -i to -d regarding number of ↵Pedro Vicente Nunes2008-05-201-1/+1
| | | | | | links in indexed format tested: windows
* [svn-r15044] backward compatibility for old -i infile -o outfile optionsPedro Vicente Nunes2008-05-202-18/+195
| | | | | | | | | | | | | | | | | if these are detected this syntax is used, otherwise the one in usage is used there was another -i option for -i L2, --indexed=L2 Minimum number of links in the indexed format That was changed to -d -d L2, --indexed=L2 Minimum number of links in the indexed format Tested: windows, linux
* [svn-r15036] Bug fix.Albert Cheng2008-05-1911-44/+44
| | | | | | | | | | | | | | | | | | | Description: The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the Fortran API source so that conclude.am will give fortran api prefix in the test output. The symbox HDF_FORTRAN is also used in configure for a different purpose (indicated --enable-fortran). They conflicted. Similar problem for the symbol HDF_CXX. Solution: Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is a more appropriate name. Same for CXX_API. Along the way, discovered that the Makefile.am of hl/fortran/test and hl/cxx/test did not have those symbols at all. Added them in. Platform tested: Kagiso only. It is a trivia change.
* [svn-r15007] Purpose: configure cleanupMike McGreevy2008-05-1511-11/+0
| | | | | | | Description: cleaning up configure related to removal of --disable-hsizet flag, which we no longer support. Tested: kagiso
* [svn-r15003] Purpose:Albert Cheng2008-05-1511-0/+165
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Improvement. Description: src/libhdf5.settings was the initial configure summary and is installed. Then configure is changed to dump a summary of the configure settings to the output and also append it to src/libhdf5.settings. That created two different output formats and duplicated information. This is the initial attempt to clean up this confusion and unify the output format. It is decided to use the src/libhdf5.settings template as the unified means. This requires more macros symbols be defined. The following symbols are all related to generating the src/libhdf5.settings file. AC_SUBST(EXTERNAL_FILTERS) AC_SUBST(MPE) MPE=no AC_SUBST(STATIC_EXEC) STATIC_EXEC=no AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no AC_SUBST(FC) HDF_FORTRAN=no AC_SUBST(HDF_CXX) HDF_CXX=no AC_SUBST(CXX) HDF_CXX=no AC_SUBST(HDF5_HL) HDF5_HL=yes AC_SUBST(GPFS) GPFS=no AC_SUBST(LINUX_LFS) LINUX_LFS=no AC_SUBST(INSTRUMENT) INSTRUMENT=no AC_SUBST(CODESTACK) CODESTACK=no AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no AC_SUBST(DIRECT_VFD) DIRECT_VFD=no AC_SUBST(THREADSAFE) THREADSAFE=no AC_SUBST(STATIC_SHARED) AC_SUBST(enable_shared) AC_SUBST(enable_static) AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a` The src/libhdf5.settings.in has CONDITIONAL's added to it too. The untrue conditions turned into a "#" and these lines are cleaned by the post processing script. Platform tested: h5committest on kagiso, smirom and linew.
* [svn-r14977] update comments, formattingPedro Vicente Nunes2008-05-121-5/+9
| | | | tested: windows, linux
* [svn-r14976] Support for external links follow up. The format is to print ↵Pedro Vicente Nunes2008-05-125-35/+184
| | | | | | | | | | | | | | | | | | | | | | | | | | | | the target object as part of TARGETPATH, noted with some extra indentation The previous printing of LINKCLASS 64 was removed HDF5 "textlinksrc.h5" { GROUP "/" { EXTERNAL_LINK "ext_link1" { TARGETFILE "textlinktar.h5" TARGETPATH "dset" DATASET "dset" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 6 ) / ( 6 ) } DATA { (0): 1, 2, 3, 4, 5, 6 } } } } } There is no script test for this behavior so far, because test script uses complete paths that vary from test to test, making not possible to define a valid TARGETFILE in the file tested: windows, linux, solaris
* [svn-r14937] fix typo in commentPedro Vicente Nunes2008-05-061-2/+2
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* [svn-r14935] correct an error in the usage textPedro Vicente Nunes2008-05-052-2/+2
| | | | tested: windows, linux, solaris
* [svn-r14934] Add a test for the floating point user defined printf formatPedro Vicente Nunes2008-05-056-3/+93
| | | | | | | | | | | | | | | | Usage is -m T, --format=T Where T - is a string containing the floating point format, e.g '%.3f' The test consists of writing a number with 7 fractional digits (default precision display of %f is 6 digits) and have the 7 digits displayed with -m %.7f fpformat.h5 Tested: windows, linux, solaris Note: the output file was generated in linux, it may be possible that platforms other than the ones tested have a different representation of the number
* [svn-r14933] Purpose: Updating HDF5 to use automake 1.10.1 and libtool 2.2.2Mike McGreevy2008-05-0511-171/+215
| | | | | | | | | | | | | | | | | | Description: Applying update to autotools that was applied to 1.8 a couple of weeks ago to the trunk. Updated bin/reconfigure script to reflect the new versions of libtool and automake in the /home1/packages/ directory. Rearranged configure.in script. When using libtool 2.2.2, the libtool script doesn't generate until later in the configuration process, so I had to move a test that parsed through the libtool script to a point after where it was actually being generated. Ran libtoolize on the project, and ran bin/reconfigure to regenerate configure and Makefile.in's throughout. Tested: kagiso, smirom, linew (h5committest)
* [svn-r14913] Introduced a compression ratio = uncompressed size / ↵Pedro Vicente Nunes2008-05-011-13/+15
| | | | | | | | compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux
* [svn-r14905] Introduced a ratio formula compression ratio = uncompressed ↵Pedro Vicente Nunes2008-05-016-12/+12
| | | | | | | | size / compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux, solaris
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-3069-1424/+2094
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-3069-2094/+1424
| | | | New fortran wrappers added.
* [svn-r14893] fix typo in commentPedro Vicente Nunes2008-04-291-1/+1
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* [svn-r14892] RFC display compression ratio in h5dumpPedro Vicente Nunes2008-04-296-11/+82
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Here's the current behavior of h5dump regarding the printing of the dataset creation property list For example ./h5dump -H -p -d filters HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } The proposed behavior is to add this information after SIZE SIZE 385 (51.9%COMPRESSION) That percentage is obtained trough Per = (b-a) / a Where a = theoretical size obtained by multiplying datum size times number of elements b = size obtained with H5Dget_storage_size The final print would look like HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 (51.9%COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } tested: windows, linux, solaris
* [svn-r14792] bug fix: #1106 h5dump -b will dump ASCII values for datasets ↵Pedro Vicente Nunes2008-04-034-32/+9
| | | | | | after the first one. One variable that controls the binary output was incorrectly reset to zero after a binary output was done a first time. The effect was that on cases of several datasets, the ones after the first were not binary written. Eliminated the resetting of that variable and tested a file with several datasets. Modified the test file so that it is easier to test with the tool binread, that reads the binary output of h5dump. tested: windows, linux
* [svn-r14735] make 1.8 and 1.6 code equal or similarPedro Vicente Nunes2008-03-131-19/+22
| | | | | formatted code tested: windows, linux
* [svn-r14733] make 1.8 and 1.6 code equal or similarPedro Vicente Nunes2008-03-131-134/+134
| | | | | | formatted code bug fix: the 1.6 branch did not have a test for the existence of long double type on print_type (print name of datatype) tested: windows, linux
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