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* [svn-r19286] Corrected name of file appearing in expected output.Allen Byrne2010-08-241-1/+1
| | | | (Missed edit from local test)
* [svn-r19282] Fix test scripts (Cmake needs to capture output yet)Allen Byrne2010-08-234-22/+43
| | | | | | linux script needed -R and double compare: Tested: local linux
* [svn-r19265] Correct naming of SKIP testAllen Byrne2010-08-201-1/+4
| | | | Tested: local linux
* [svn-r19262] Undo r19261.Allen Byrne2010-08-201-0/+7
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* [svn-r19261] Remove unused variables and allocationAllen Byrne2010-08-201-7/+0
| | | | Tested: local linux
* [svn-r19255] Description:Quincey Koziol2010-08-201-0/+1
| | | | | | | | | | | | | | | | | | | | | | Add missing include file from r19252. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19252] Description:Quincey Koziol2010-08-1915-223/+267
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes from branch to trunk: r19161: Fixed the part for matching the subset info with dataset r19189: BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump. Changed all references to use new data structure. Added tests for each subset parameter. r19190: Added new h5dump ddl files Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (h5committested on branch)
* [svn-r19237] Description:Quincey Koziol2010-08-125-75/+59
| | | | | | | | | | Clean up misc. compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19228] File read/write happens at configure time, so moved windows ↵Allen Byrne2010-08-111-10/+11
| | | | | | specific copy from test macro to where the expected file is copied. Tested: windows
* [svn-r19214] Test for compare of output text to expected needed to account ↵Allen Byrne2010-08-101-9/+17
| | | | | | | | for windows line endings. Moved ADD_TEST commands to macro. Tested: local linux, windows
* [svn-r19202] [BZ1953]implementation for the proposed changes suggested by ↵Allen Byrne2010-08-094-19/+404
| | | | | | | the "h5dump_output_option" RFC. This required that the region reference code be duplicated and reduced to allow the do_bin_output() function to understand region references. The container type-id also needed to be propagated into the do_bin_output() function and functions referenced (render_bin_output*). Existing tests tested the binary function, so only one test was added to test the region reference generated file. Tested: local linux
* [svn-r19183] Corrected h5repack verbose test for windowsAllen Byrne2010-08-062-21/+21
| | | | | | Updated tools/lib source dir variable for source list Tested: local linux
* [svn-r19181] Added new h5repack test for bug1797 to CMakeLists.txt. Added ↵Allen Byrne2010-08-062-8/+26
| | | | | | corrected changes to test script for verbose filters Tested: local linux
* [svn-r19179] Description:Quincey Koziol2010-08-057-12/+161
| | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r19079 & 19080: [BZ1942] h5dump -u to generate XML, it does not respect the -m option xml version of dump_data function didn't check for use of fp_format variable. Added new test expected file for committed bug 1942 r19103, 19104 & 19105: [BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option. Added new test file for solution to BZ1821 BZ1821 - Bring test changes from the shell script actually used. Tested on: Mac OS X/32 10.6.4 (amazon) debug & production (h5committested on branch)
* [svn-r19173] Took out several redundant lines when object IDs are closed.Raymond Lu2010-08-051-9/+0
| | | | Tested on jam.
* [svn-r19156] Description:Quincey Koziol2010-07-301-142/+168
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring revisions from Coverity branch back to trunk: r19044: Coverity #449 - Line 1560 called function H5O_chunk_protect for 2 pointers to allocate. But when there's failure on the second one, the first wasn't freed (H5O_chunk_unprotect). We fixed it by freeing the pointers when an error happens. r19045: Fixed coverity issue # 319. Free sec_node in done if it is not NULL. r19046: Add intended but missing assignments to initialize pointers to NULL (coverity issue fixes). r19049: Hdf5_1_8_coverity branch was recreated from hdf5_1_8 branch in revision 18839 without fix for Coverity issue #84 having been propagated to the hdf5_1_8 branch. This revision adds the fix again. r19060: added parentheses to see if they will keep subversion from getting confused r19061: Fix coverity item 139. Fixed incorrect condition for freeing buffer on error. Fix coverity items 20 and 21. Removed unused NTESTS facility from dtypes.c. Cleanup in H5Shyper.c. r19062: Fix coverity item 450. Check to see if chk_proxy has been allocated before attempting to free it. Fix coverity item 454. Check to see if allocation of buf failed in H5D_fill_refill_vl. Fix coverity items 455-457. Initilize hid_t's to -1, check their value before attempting to close them, and check if the close failed. r19063: New fix to address coverity issue #84. Check that pointers in H5Z_xform_find_type are not NULL before passing them to H5T_cmp. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (Too minor to require h5committest)
* [svn-r19153] Description:Quincey Koziol2010-07-291-43/+34
| | | | | | | | | | | | | | | | | | | | | | | | Bring changes on Coverity branch back to trunk: r19040: Fixed coverity #440 - NULL check after dereference. We moved the NULL check up into the IF block and changed it to assertion. r19041: Maintenance: Addressed Coverity issues 441 and 449 by initializing proper variables r19042: In function H5O_chunk_protect (H5Ochunk.c): - Initialize H5O_chunk_proxy_t pointers chk_proxy and ret_value. - Free chk_proxy on error. r19043: Addressed coverity issues 442 - 448 by initializing pointers to NULL. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (Too minor to require h5committest)
* [svn-r19074] Added check for no encoding to determine result for testAllen Byrne2010-07-151-2/+7
| | | | Tested: Windows
* [svn-r19059] Brought changes from hdf5_1_8 to add version information for ↵Larry Knox2010-07-0911-0/+22
| | | | | | fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817). Tested with new/h5committest on amani, heiwa, and jam.
* [svn-r19057] Purpose: Jonathan Kim2010-07-081-0/+4
| | | | | | | | | | add reference file entries for the new test expected output files Description: This is dependent to r19051. Tested: Windows (cmake)
* [svn-r19051] Purpose:Jonathan Kim2010-07-0714-169/+355
| | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Tested: jam, amani and heiwa
* [svn-r19037] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-299-0/+228
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r19034] Purpose:Jonathan Kim2010-06-281-0/+34
| | | | | | | | | | Change h5ls not to manipulate special characters in object name or attribute name for smart display. Description: Related to "But1784 h5ls has input and output issues with links that have '\' characters in them." Tested: jam, amani and linew
* [svn-r18985] Test feature: (bugs 1919)Albert Cheng2010-06-083-4/+28
| | | | | | | | | | | | | | | | Problem: some launching command like yod (and sometimes mpirun), do not pass back the exit code of the executables back to the shell. It always returns 0 if it can launch the executable. This cause tests that expect non-zero exit code to fail incorrectly. Short term Solution: Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not test conditions that rely on non-zero exit code. Tests: dove-linux using RUNSERIAL=thgyod to see the failures and using $RUNSERIAL_NOEXITCODE=yes to bypass the errors. Also h5committested.
* [svn-r18984] Description:Albert Cheng2010-06-071-3/+9
| | | | | | | Fixed exit code (sometimes return code in Main) to follow the HDF5 standards. Tested: Tested in Dove-linux only since change is trivial and has passed in v1.8.
* [svn-r18958] Purpose:Jonathan Kim2010-06-031-12/+12
| | | | | | Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'. Description: There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
* [svn-r18943] Purpose:Jonathan Kim2010-06-0224-218/+829
| | | | | | | | | | | | Support follow symbolic links. Description: Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam, amani and linew
* [svn-r18873] Purpose:Jonathan Kim2010-05-2115-142/+142
| | | | | | | | | | | Rename '--follow-links' to '--follow-symlinks' Description: The '--follow-links' option is to follow symbolic links (soft and external). Make the name more intuitive and specific to the feature. Tested: jam, amani and linew
* [svn-r18856] Added CPack commands for installtion programAllen Byrne2010-05-1910-3/+23
| | | | Tested: local linux and Windows
* [svn-r18831] Purpose:Jonathan Kim2010-05-171-5/+4
| | | | | | | Resolve build issue on Windows due to the location of variable definition. Tested: jam
* [svn-r18816] Move progname and d_status functions from h5tools to h5tools_utilAllen Byrne2010-05-144-34/+34
| | | | | Tested: linux and windows
* [svn-r18811] Removed references to packedbits filesAllen Byrne2010-05-141-3/+0
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* [svn-r18808] Purpose:Mike McGreevy2010-05-143-3/+3
| | | | | | | | | | | | | | | | | | | Fixed file cleanup during make distclean / make check. Description: The h5jam Makefile and the h5importtestutil.sh script both included cleanup steps that removed "*.txt" from the directory. This resulted in the new CMake specific configuration file, CMakeLists.txt, getting blown away by make distclean (for h5jam) and make check (for h5import). I've removed the *.txt from the h5jam Makefile as the directory looks to be getting cleaned appropriately without it, and I've modified the h5import script h5importtestutil.sh to point to the specific .txt files to clean. Tested: jam
* [svn-r18793] Add files to support building library with CMakeAllen Byrne2010-05-1313-0/+2642
| | | | Tested: Local linux
* [svn-r18788] Added h5tools.h include to h5diff_common.h to fix warnings ↵Allen Byrne2010-05-131-2/+16
| | | | | | about the new progname and status functions Tested: local linux
* [svn-r18785] Description:Quincey Koziol2010-05-131-1/+1
| | | | | | | Fix unterminated comment. Tested on: None - just eyeballed.
* [svn-r18759] pull r18757 from 1.8 branchAllen Byrne2010-05-1134-481/+571
| | | | | | | | | Enable tools lib to be built as a dll on windows. Added two get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated error_mesg() and warn_mesg() to remove progname argument and use get functions Tested: Windows, linux
* [svn-r18709] Purpose:Mike McGreevy2010-05-0511-11/+11
| | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag has been removed in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18650] Description:Quincey Koziol2010-04-278-12/+14
| | | | | | | | | | | | | | | | | | | Bring back various minor tweaks & cleanups from the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18648] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-271-0/+1
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on jam. I tested the same change for 1.8 on amani, linew, and jam.
* [svn-r18642] Purpose:Jonathan Kim2010-04-272-2/+7
| | | | | | | | | | Fix for Bug 1793 - h5ls on a non-existent file gives 0 return code Description: After the fix, h5ls returns 1 (EXIT_FAILURE) if non-existent file is given. Tested: jam, amani, linew
* [svn-r18614] Purpose:Jonathan Kim2010-04-226-160/+205
| | | | | | | | Fix for bug 1817 : h5copy fail to copy dangling link by specifying link path directly Tested: jam, amani, linew
* [svn-r18579] Purpose:Mike McGreevy2010-04-1511-13/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18548] Description:Quincey Koziol2010-04-131-1/+1
| | | | | | | Minor cleanups to compile with PGI C compiler 10.x. Tested on: Linux 2.4/32 (jam) w/PGI 10.x C and F90 compilers
* [svn-r18457] Purpose:Jonathan Kim2010-03-253-1/+455
| | | | | | | | | | | | | | | | | | | | Add test cases for bug1797 - h5repack doesn't handle references in compound and vlen datatypes for attributes Description: Add test cases ahead as waiting for H5Acopy to complete the fix. 1. obj references in attr of compound type 2. region references in attr of compound type 3. obj references in attr of vlen type 4. region references in attr of vlen type NOTE: This test is skipped now and will be included when code part is completed. ( H5Acopy() replaces copy_attr() ) The file&code can be used for lib portion test. Tested: jam, amani, linew
* [svn-r18454] Purpose:Jonathan Kim2010-03-257-403/+701
| | | | | | | | | | | | Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE. Description: include test cases. also test cases for attribute with object and region reference. Tested: jam, amani, linew
* [svn-r18449] Purpose:Jonathan Kim2010-03-251-3/+3
| | | | | | | | Resolve build issue on Sloaris due to white space from the previous checkin r18447 Tested: jam, amani , linew
* [svn-r18447] Purpose:Jonathan Kim2010-03-241-5/+15
| | | | | | | | | | | | Bug1727 - NPOESS: h5copy should copy region references Description: Tested and added test cases from previous checkin r18319 Reference Manual and tool's usage section for '-f ref' option is updated for more comprehensibility. Tested: jam
* [svn-r18442] Purpose:Jonathan Kim2010-03-231-1/+2
| | | | | | | | | | | Resolve windows build issue from previous checkin r18425 Description: The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Tested: jam
* [svn-r18425] Purpose:Jonathan Kim2010-03-185-5/+341
| | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: handles object reference to named-datatype as well. Add test cases. Tested: jam, amani, linew
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