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* [svn-r16182] Description:Quincey Koziol2008-12-111-2/+2
| | | | | | | | | | | | | | | | | | | | | | Rename internal routines, variables, macros, typedefs, etc. for chunked dataset storage from "istore" to some variant of "chunk" or "btree". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r16114] remove commented codePedro Vicente Nunes2008-11-211-13/+0
| | | | tested: windows, linux
* [svn-r16112] #1375. Define a default chunk whose size is manageable. Defined ↵Pedro Vicente Nunes2008-11-213-13/+55
| | | | | | currently as the same size of hyperslab (that compares the dimension sizes against a predefined constant size and chooses the minimum between the two) Tested : linux, windows
* [svn-r16030] updated some comments regarding a function change regarding ↵Pedro Vicente Nunes2008-11-041-9/+6
| | | | | | | | | | h5diff return value (not done for 1.8) * Pedro Vicente, pvn@hdfgroup.org, Nov 4, 2008 * Compare the graph and make h5diff return 1 for difference if * 1) the number of objects in file1 is not the same as in file2 * 2) the graph does not match, i.e same names (absolute path) * 3) objects with the same name are not of the same type
* [svn-r16024] For scalar string datasets print the character position when a ↵Pedro Vicente Nunes2008-11-044-602/+745
| | | | | | difference is found instead of a non-existing array position Tested: windows
* [svn-r16012] Bug fixPedro Vicente Nunes2008-10-311-5/+9
| | | | | | | When -b was requested and no -o (file name) binary output was made to stdout Had a check after command line parsing to verify if -o is present, otherwise exit Tested: windows, linux
* [svn-r15993] Pedro Vicente Nunes2008-10-291-186/+45
| | | | | | Merge with 1.8 rev 15985 reorganized the code to deal with deprecated -i -o for in/out files to avoid duplicated code Tested: linux
* [svn-r15992] Merge with 1.8 rev 15973Pedro Vicente Nunes2008-10-291-1/+4
| | | | | make -b accept both MEMORY and NATIVE Tested: linux
* [svn-r15991] Merge with 1.8 rev 15969Pedro Vicente Nunes2008-10-294-53/+92
| | | | | | | | | | | | | | | Introduced a new feature in the tools library regarding command line parsing In the definition of arguments, an "*" means that the switch can or can not have an optional argument. This "*" is put in the code regarding the letter definition, and it is transparent to the user (e.g b* instead of the previous b: ), where ":" notes a required argument after the letter (and no ":" or "*" notes no argument, mandatory) Used for the h5dump binary option -b It can be now 1) -b (defaults to NATIVE) 2) - b NATIVE 3) - b FILE 4) -b LE 5) -b BE Note: the keyword NATIVE replaces MEMORY This feature (-b with no argument) was tested with the sequence of h5dump to binary (NATIVE) then h5import to generate an HDF5 file from the binary file and h5diff to compare the 2 HDF5 files Tested: linux
* [svn-r15990] Merge with 1.8 rev 15967Pedro Vicente Nunes2008-10-291-4/+18
| | | | | | regarding the return value of h5diff (0, no difference in files, 1 difference ) objects with the same name must be of the same type tested: linux
* [svn-r15989] Merge with 1.8 up to rev 15945Pedro Vicente Nunes2008-10-293-74/+11
| | | | | | Regarding use of unsigned long long print format Tested: linux
* [svn-r15988] Merge with 1.8 up to rev 15871Pedro Vicente Nunes2008-10-294-22/+94
| | | | | | Regarding h5diff, h5copy Tested: linux
* [svn-r15987] Merge with 1.8 rev 15871Pedro Vicente Nunes2008-10-2921-125/+53
| | | | | | Eliminate -c option and make that behavior the default and return 2 instead of -1 on error status tested: linux
* [svn-r15979] some test files from rev 15866 from 1.8 branch Pedro Vicente Nunes2008-10-283-0/+2
| | | | tested: linux
* [svn-r15977] merge rev 15866 from 1.8 branch into trunk (diffs for unsigned ↵Pedro Vicente Nunes2008-10-285-456/+889
| | | | | | long long) tested: windows, linux
* [svn-r15942] Purpose: Bug Fixes and Libtool UpgradeMike McGreevy2008-10-2412-68/+71
| | | | | | | | | | | | | | | | | | Description: - Remove need to set LD_LIBRARY_PATH when using shared szip library. - Libtool 2.2.6a is now used to generate libraries. - 'make check install' dependency bug is fixed, and should no longer break the build. - removed hard coding of shell in config/commence.am, as this causes problems on Solaris with the new version of libtool. - RELEASE.txt with appropriate changes. Tested: - kagiso, smirom, linew (merged from 1.8, pretty quick tests)
* [svn-r15886] Purpose: Close bug 1332Neil Fortner2008-10-1621-107/+530
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15822] Bug fix: #1090Albert Cheng2008-10-082-4/+4
| | | | | | | | | | | The custom rules for installing h5cc, h5fc, and the fortran modules in fortran and in hl/fortran don't use $(DESTDIR). Added it to all those rules. Tested: kagiso both serial and parallel with fortran and cxx enabled. Tested by: make install make DESTDIR=/tmp/acheng install diff -r /tmp/acheng/.../hdf5 hdf5
* [svn-r15819] Modifications for bug #1253:Vailin Choi2008-10-081-7/+22
| | | | | | | | | 1. Fixed segmentation fault in print_group_info() 2. Call print_statistics() in main() when objects/links are successfully traversed; otherwise, return warning message. line, and those below, will be ignored-- M h5stat/h5stat.c
* [svn-r15804] Purpose: Add option to h5ls to enable external link traversal.Neil Fortner2008-10-0715-11/+64
| | | | | | | | Description: Added -E option to h5ls. When set, this alows h5ls to enter external files (currently only through an external link). The -r option by itself will no longer allow h5ls to traverse external links. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15792] Bug fix. When detecting the user requested filters, the "all" ↵Pedro Vicente Nunes2008-10-062-39/+67
| | | | | | option was not taken in consideration when printing the compression ratio Tested: windows, linux
* [svn-r15746] Description:Quincey Koziol2008-10-011-0/+17
| | | | | | | | | | | | | | | | | | | | | Add support for extensible array "super block". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15721] Added a file with user block data to be used by the h5repack ↵Pedro Vicente Nunes2008-09-291-0/+1
| | | | windows shell script only Note: for the unix shell script this file is not used
* [svn-r15705] bug fixPedro Vicente Nunes2008-09-262-0/+1
| | | | | | make a test generate a LE output for test portability tested: linux, solaris
* [svn-r15699] Bug fix #1281Pedro Vicente Nunes2008-09-255-6/+44
| | | | | | | | | | The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted. Solution: remove TEXTFPE from the help system and have the TEXTFPE input type do the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f) added a test tested: windows, linux
* [svn-r15678] formatted codePedro Vicente Nunes2008-09-221-4/+8
| | | | tested: windows, linux
* [svn-r15676] Description:Quincey Koziol2008-09-221-26/+22
| | | | | | | | | | | | | | | | | | | | | | | Centralize all macros for declaring "magic numbers"/signatures for objects in the file into src/H5Fprivate.h, so it's easier to know what values have already been defined, etc. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15674] Description:Quincey Koziol2008-09-221-3/+20
| | | | | | | | | | | | | | | | | | | | | | Add base support for extensible array "data blocks" to code, tests and h5debug. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15668] Purpose: Add feature requested in bug #1282Neil Fortner2008-09-2113-60/+321
| | | | | | | | | | Description: Adds capability to h5ls to traverse external links when the -r (recursive) option is given. Changes to the way absolute path names are patched in h5trav.c. Changes to the way recursive traversal starting from a non-root group is handled (which also fixes some preexisting issues). Tests added for these cases. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15664] fix comments Pedro Vicente Nunes2008-09-191-8/+15
| | | | tested: linux
* [svn-r15653] cleaned warningsPedro Vicente Nunes2008-09-183-74/+22
| | | | tested: windows, linux
* [svn-r15652] Cleaned compiler warnings Pedro Vicente Nunes2008-09-183-26/+64
| | | | | | Bug fix: do not print print compression ratio when the requested filter is NONE Tested: windows, linux
* [svn-r15650] Cleaned compiler warnings Pedro Vicente Nunes2008-09-181-4/+4
| | | | | | Bug fix: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call Tested: windows, linux
* [svn-r15643] add a failure condition of writing user blockPedro Vicente Nunes2008-09-171-161/+178
| | | | Tested: windows, linux
* [svn-r15636] formatted codePedro Vicente Nunes2008-09-161-3790/+3850
| | | | tested: windows, linux
* [svn-r15635] add info regarding user block to usagePedro Vicente Nunes2008-09-161-1/+2
| | | | tested: windows, linux
* [svn-r15634] Add a default user block size of 1024 when none is givenPedro Vicente Nunes2008-09-162-5/+11
| | | | Tested: windows, linux
* [svn-r15628] Description:Quincey Koziol2008-09-1632-2040/+2040
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15617] Description:Quincey Koziol2008-09-111-154/+151
| | | | | | | | | | | | | | | | | | | | | | | | Clean up how v2 B-tree (and extensible array) classes are determined in h5debug. Add support for extensible array headers and index blocks to h5debug Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15557] bug fix: the -m flag add a long description of "--threshold" ↵Pedro Vicente Nunes2008-08-291-1/+1
| | | | | | that was changed to "--minimum" because "--threshold" now refers to the threshold parameter for H5Pset_alignment tested: linux
* [svn-r15556] Check options for H5Pset_alignment.Pedro Vicente Nunes2008-08-291-9/+2
| | | | | | threshold is zero default (a valid value) but zero is not a valid alignment tested: windows, linux
* [svn-r15551] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-287-23/+192
| | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15547] fix typosPedro Vicente Nunes2008-08-272-2/+2
| | | | tested: linux
* [svn-r15527] turn off a debug print flagPedro Vicente Nunes2008-08-251-1/+1
| | | | tested: windows, linux
* [svn-r15526] userblock optionsPedro Vicente Nunes2008-08-253-8/+9
| | | | | | only write the user block of a pre-existing file with user block in case there is no input user block file tested: windows, linux
* [svn-r15521] #1184Pedro Vicente Nunes2008-08-226-16/+310
| | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15509] bug fixPedro Vicente Nunes2008-08-211-270/+282
| | | | | | when comparing attributes, a type ID was not properly closed solution: close the Id on the iteration and continue instead of goto out of the cycle
* [svn-r15462] Description:Quincey Koziol2008-08-122-1/+2
| | | | | | | | Correct compiler warnings from Visual Studio. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require full h5committest)
* [svn-r15458] Purpose: Modify the library to take the proper action when ↵inactive/jpeg_converterNeil Fortner2008-08-1158-3/+14
| | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15446] bug fixPedro Vicente Nunes2008-08-072-4/+16
| | | | | | | http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
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