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* [svn-r14155] Copy user block when repack a file by defualt.Peter Cao2007-09-251-3/+86
| | | | (need to add more options as stated in bug 173)
* [svn-r14154] Description:Quincey Koziol2007-09-2511-233/+223
| | | | | | | | | | | | | | | | | | | | Finish deprecating last H5G symbol (H5G_obj_t) - yay! Lots of misc. library fixes to remove confusion between links and objects. The tools could still use another pass, to remove h5trav_type_t type and make the correct distinction between links & objects. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14148] Description:Quincey Koziol2007-09-141-62/+32
| | | | | | | | | | | | | | | | Add H5Rget_obj_type() to the API versioning and switch internal routines to use H5Rget_obj_type2() Misc. other code cleanups, etc. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14147] Description:Quincey Koziol2007-09-131-4/+0
| | | | | | | | Clean up some "WANT_H5_V1_4_COMPAT" #ifdefs that somehow survived this far... Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14144] Description:Quincey Koziol2007-09-1333-4606/+4193
| | | | | | | | | | | | | | | | Move H5Gget_objinfo() to deprecated symbols section and retarget internal usage to H5Lget_info()/H5Oget_info(). Misc. other code cleanups... Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 2.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14137] Description:Quincey Koziol2007-09-071-1/+1
| | | | | | | | Correct name used for checking objects to operate on for h5repack, exposed by recent traversal routine changes. Tested on: Solaris/32 5.10 (linew) w/szip
* [svn-r14136] Description:Quincey Koziol2007-09-0614-1083/+1055
| | | | | | | | | | | | | | Move H5Gget_num_objs() and several minor macros, etc. to deprecated symbols section, replacing it with H5Gget_info(). Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14132] Description:Quincey Koziol2007-08-303-256/+219
| | | | | | | | | | Regenerate the h5diff_types.h5 file, which had somehow gotten mangled in some earlier checkin (prior to ~2-3 days ago, at least). Clean up formatting a bit also.. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14131] Description:Quincey Koziol2007-08-3010-134/+128
| | | | | | | | | | | | | | Move H5Giterate() and H5G_iterate_t to deprecated symbols section, replacing them with H5Literate and H5L_iterate_t respectively. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) AIX/32 5.3 (copper) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14129] Description:Quincey Koziol2007-08-303-72/+74
| | | | | | | | | | | | | | | | Add H5O{set|get}_comment routines, which were overlooked before. Move H5G{set|get}_comment routines to deprecated code section, replacing internal calls with H5O{set|get}_comment. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) AIX/32 5.3 (copper) Mac OS X/32 10.4.10 (amazon)
* [svn-r14127] Description:Quincey Koziol2007-08-292-91/+86
| | | | | | | | | | | | | Move H5Gget_linkval to deprecated symbol section and replace with H5Lget_val for internal calls. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14126] Description:Quincey Koziol2007-08-293-293/+290
| | | | | | | | | | | | | Move H5Gunlink to deprecated symbol section, replacing internal calls with H5Ldelete. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14120] Description:Quincey Koziol2007-08-281-2/+2
| | | | | | | | | | | | Move H5Glink2 to deprecated routines section. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14117] Description:Quincey Koziol2007-08-285-150/+148
| | | | | | | | | | Move H5Glink() into "deprecated routines" section, replacing internal usage with H5Lcreate_hard/H5Lcreate_soft. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Solaris/32 5.10 (linew)
* [svn-r14116] Description:Quincey Koziol2007-08-281-7/+9
| | | | | | | | Fix error in end_obj() macro to make it safer in situations without enclosing braces. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14115] Description:Quincey Koziol2007-08-2817-1298/+1205
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14114] Purpose: Fix a subtle Windows bug in h5unjamScott Wegner2007-08-271-1/+1
| | | | | | | | | Description: In h5unjam.c, there was a call to "open", rather than "HDopen". This isn't a problem on most platforms, as the are equivalent. However, on Windows, we use the HDopen macro to unconditionally set the O_BINARY flag. This is needed to safely seek within a file. Tested: VS2005 on WinXP h5committest (kagiso linew smirom)
* [svn-r14104] Description:Quincey Koziol2007-08-238-669/+643
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14097] Description:Quincey Koziol2007-08-211-1/+1
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14071] Pedro Vicente Nunes2007-08-101-1/+1
| | | | | | typo fix in usage message tested: linux
* [svn-r14069] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14068] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14051] Pedro Vicente Nunes2007-08-072-6/+2
| | | | | | Make the compare to itself file test be another due to the recently introduced file with Nans Tested: linux, solaris
* [svn-r14048] Pedro Vicente Nunes2007-08-074-160/+221
| | | | | | Added a dataset with NaN values to the h5diff file generator program and new binary file Tested: linux
* [svn-r14044] Pedro Vicente Nunes2007-08-071-1/+1
| | | | | | updated the usage message to say the STR option is implemented tested: windows, linux
* [svn-r14039] Pedro Vicente Nunes2007-08-076-3/+209
| | | | | | | | | | | | | New feature: implementation of h5import conversion of an ASCII plain-text file containing text data The string type H5T_C_S1 is used to define the data (the datum is defined here as one line of text in the text file). The size is set to variable length (H5T_VARIABLE) The space used is a 1D array with as many elements as there are lines in the ASCII file (a line is defined by the inclusion of an end of line character, ASCII number 10). A first traversal of the input text file must be made to determine the number of lines in the file and thus the dimensionality of the dataset. New test to the test script added text input files and teststr.h5 for h5dump to compare added Tested: windows, linux, solaris
* [svn-r14023] Purpose:Vailin Choi2007-07-2722-37/+961
| | | | | | | | | | reorganization. Description: move the h5stat tool into its own directory. Platform tested: kagiso.
* [svn-r14001] Pedro Vicente Nunes2007-07-231-1/+1
| | | | | | fixed comments tested: linux
* [svn-r14000] Pedro Vicente Nunes2007-07-231-2/+2
| | | | | | | bug fixes: help message had incorrections, typos tested: linux
* [svn-r13999] Pedro Vicente Nunes2007-07-231-279/+279
| | | | | | | purpose: bug 791 redirect help output to stdout rather to stderr tested: windows, linux
* [svn-r13998] Pedro Vicente Nunes2007-07-231-3/+3
| | | | | | typo fixes in error messages tested: linux
* [svn-r13984] Description:Quincey Koziol2007-07-176-527/+423
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13980] Cast num_objs, num_attrs and dims to "size_t" due to the ↵Vailin Choi2007-07-141-4/+11
| | | | | | -Mbounds problem of the pgi-32 bit on indexing.
* [svn-r13979] purpose:Vailin Choi2007-07-135-0/+230
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13978] purpose:Vailin Choi2007-07-138-74/+346
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13975] Add --latest, -compact=<size>, ... options to use the lastest ↵Peter Cao2007-07-135-6/+210
| | | | | | file format. Add test for the options to the daily test.
* [svn-r13972] Description:Quincey Koziol2007-07-1310-0/+10
| | | | | | | | | Add --with-default-api-version configure flag. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13971] Description:Quincey Koziol2007-07-1210-0/+10
| | | | | | | | | | | | | | Add --enable-deprecated-symbols configure option, to allow users to remove deprecated public API symbols at configure time. Add bin/make_vers script to bin/reconfigure actions. Run bin/reconfigure to regenerate autotool components. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13948] Description:Quincey Koziol2007-07-052-2/+2
| | | | | | | | | Make h5dump more gracious and informative about objects it doesn't understand. Tested on: Mac OS X/32 10.4.10 (amazon) No need for h5committest - very minor
* [svn-r13928] Purpose: 1) Moving H5_CXX_HAVE_OFFSETOF macro to ↵Mike McGreevy2007-06-2910-29/+19
| | | | | | | | | | src/H5pubconf.h file. 2) Removing configuration of c++/src/H5cxx_pubconf.h file. Reasoning: the additional pubconf file caused compilation complications, this is cleaner. Tested: kagiso, smirom
* [svn-r13926] Description:Quincey Koziol2007-06-291-2/+2
| | | | | | | | | | | | Add small interface to "wrap" a static buffer (usually on the stack), but still allow for buffers larger than the static buffer to be allocated. This can eliminate _many_ short-lived buffer allocations in situations where the buffer is a predictable size (or at least a "very likely" size). Also, some minor code cleanups, particularly in the SOHM caching code. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13925] Purpose: intermediate checkin for offsetof fix for PGI compiler.Mike McGreevy2007-06-2810-19/+32
| | | | | | | | | | Description: added new configuration to generate a pubconf file in the c++/src directory, H5cxx_pubconf.h. When C++ compiler recognizes 'offsetof', the macro H5_CXX_HAVE_OFFSETOF is defined in the new pubconf file. tested: kagiso, smirom
* [svn-r13914] Description:Quincey Koziol2007-06-264-1/+26
| | | | | | | Clean up files generated during testing. Tested on: Linux/32 2.6 (chicago)
* [svn-r13905] Purpose:Albert Cheng2007-06-251-43/+45
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The "h5dump -o ..." test generates temporay files in the testfiles of the source code and later on remove them. This could cuase a racing condition if more than one --srcdir build is using the same copy of the source code. Since they use the same file name in the testfiles, they may conflict with each other. Solution: Changed to generate the temporary files in the build-dir's own testfiles directory. Since the build-dir can have different names, the CMP of expected output now skip the first three lines which are label lines that contains the location of the temporary. Also removed the CREATE code since actual files created now cannot be blindly copied to the expect files. Also, expected files should be create by explicit action and careful inspection of files generated. Tested platform: Done in kagiso, both by --src-dir and in-place build.
* [svn-r13894] Description:Scott Wegner2007-06-203-4/+4
| | | | | | | | | | | On Windows, Mingw interprets all parameters starting with '/' as paths, and replaces the '/' with its home directory, "C:\Windows\msys\". This was a problem in h5diff tests such as: h5diff h5diff_101.txt $FILE1 $FILE1 /g1/d1 g1/d2 -v I've removed the leading '/', as h5diff will interpret it the same either way. Tested: kagiso, linew, and smirom, via h5committest mingw on Windows XP
* [svn-r13874] Pedro Vicente Nunes2007-06-184-10/+9
| | | | | | | | | | | | | | | | | Changed macro names, conflict with new compiler -- changed DATASET to H5_TOOLS_DATASET -- changed DATATYPE to H5_TOOLS _DATATYPE -- changed GROUP to H5_TOOLS_GROUP In mingw's version of winsock2.h they define: typedef unsigned int GROUP; remove STORAGELAYOUT macro, it was not used tested: linux
* [svn-r13850] Description:Quincey Koziol2007-06-111-0/+4
| | | | | | | | | | | Hook "default VFD" configure macros into library. Also, make "default VFD" default to sec2 instead of nothing. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13846] Purpose: To remove changes from version #13839 (regarding ↵Mike McGreevy2007-06-0810-10/+0
| | | | | | | | DEFAULT_VFD). Description: Changes made during this checkin need to be greatly modified, so I'm removing them now rather than leaving them in and fixing them later.
* [svn-r13845] Description:Quincey Koziol2007-06-081-31/+32
| | | | | | | Formatting cleanups Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13839] Purpose: creation of a DEFAULT_VFD macro in the ↵Mike McGreevy2007-06-0710-0/+10
| | | | | | | | | | | test/Makefile. Description: a new configure flag has been created that will now set a macro in the test/Makefile. The flag is with-default-vfd=. When set to a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro DEFAULT_VFD will hold this value. Tested: kagiso, smirom, linew
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