| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
| |
begin_obj and end_obj
macros in the dumper. this was basically adding a space after most of the '}'.
there are some places that don't have the space because those '}' were not printed
by the end_obj macro
|
|
|
|
|
|
|
|
|
|
|
|
| |
output for
the header information in the dumper. the header is the part before the data
block.
in h5dump.c there is support for the new -xml option. prints the output in xml
using the structure we just defined in h5tools.h.
h5dump.h- changed the begin_obj and end_obj macros. take an extra parameter now
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
Failed on T3E in which int32 is typedef to a short (4 bytes)
but the converter just used H5T_NATIVE_INT for conversion of
a STD_INT32. Int in a T3E is actually 64bit big.
Solution:
Recoded the h5type to h4type matching algorithm by making sure
the size of the H4 type used is equal to the size of the
H5 native type.
Remark: current implementation is not efficient--it does all
the sizes checking repeatedly. Should have done the type mapping
once at the beginning as initialization.
Old code are still retain via the macro NEWWAY. Need to verify
the correctness of the converter in more platforms before
finalized on the code.
Platforms tested:
Baldric (Solaris 2.6), arabica (Solaris 2.7)
T3E
|
|
|
|
| |
fixed the bug that was crashing for the development version of the dumper
|
| |
|
|
|
|
|
|
| |
a line thet closed the
attribute that wasn't ever opened. deleted the line and it was all ok.
|
|
|
|
|
|
| |
the other definitions out of the
conditionals. fixed the bug for the SDScompound.h5
|
| |
|
|
|
|
| |
complain and it is more correct this way too.
|
|
|
|
|
|
| |
now the dump structure contains 2 extra members that tell how to format the
data for the dataset regions(blocks and pts).
had to give h5ls values for these
|
| |
|
| |
|
|
|
|
| |
removed a bug that was there before
|
|
|
|
|
|
| |
struct to
display the format for the obj refs.
|
| |
|
|
|
|
|
|
| |
that tells
what command we used to generate the ddl file
|
|
|
|
| |
removed some commented code.
|
| |
|
| |
|
| |
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
| |
formatting.
in h5dump.c just initialized the values for the formatting struct.
in h5tools.c made some changes in the printing area to get the dump output to
look closer to what we wanted. the strings are currently not printing correctly.
also removed the program type variable from here.
|
| |
|
|
|
|
| |
libh5tools.c.
|
|
|
|
| |
file
|
| |
|
|
|
|
|
| |
figure a way to fix the problem. decided to back it out since i will
be leaving for christmas in a few days and won't be back until jan.
|
|
|
|
|
|
|
|
| |
Added -V option for displaying version information.
h5tools.c:
Added print_version routine to display version information.
h5tools.h:
Added print_version prototype.
|
| |
|
|
|
|
|
| |
some machines. Changed it to use argc to control the looping.
Still need to clean some more.
|
| |
|
|
|
|
| |
dump output
|
| |
|
|
|
|
|
|
|
|
|
|
| |
types
with out the square braces. also the formatting for the compound types
in the dataset part section has been corrected.
still need to update the expected outputs so there will be some errors until
I get that all checked in...
|
| |
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
** configure.in
** configure [REGENERATED]
** src/H5private.h
** src/H5public.h
** src/Makefile.in
Generates an H5pubconf.h file which is just like H5config.h except all
the preprocessor symbols have `H5_' prepended. This was done so that
the configuration results can be used in public header files without
polluting the namespace.
** src/H5.c
Added H5I_REFERENCE and H5I_VFL to the API tracing code so their names
are printed instead of just numbers.
** src/H5FDstdio.c
** tools/h5import.c
** tools/h5repart.c
** tools/pdb2hdf.c
Changed to use the `H5_' versions of configure results since these
files include only the public API.
** test/big.c
Removed a compiler warning.
** test/h5test.c
Removed unused code.
|
| |
|
|
|
|
|
|
|
|
|
| |
h5toh4 tool.
had to change some of the functions in the h5findshd.c file since we didn't
have the globals anymore. these changes also affected the h5toh5.c file.
passes all tests on unix
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
** bin/rpmsync
** config/depend1.in
Tweaks for versions of `make' that can't search directories.
** examples/Dependencies
** src/Dependencies
** test/Dependencies
** testpar/Dependencies
** tools/Dependencies
Regenerated all these with more complete path names.
|
|
|
|
|
|
|
|
|
|
|
| |
and the dumper.
so i moved the dumper stuff out to the libary. Had to change some functions
in h5findshd so they would stop using globals that shouldn't be defined in the
lib. I will remove the globals next. also the h5findshd.c has an extra member
to the struct for that objects in the table so i added that into the appropriate place.
the dumper is working ok now but the h5toh4 is still broken.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./MANIFEST
./configure.in
./configure [REGENERATED]
Added more checking for `make' features.
./Makefile.in
./doc/Makefile.in
./doc/html/Makefile.in
./doc/html/Tutor/Makefile.in
./examples/Makefile.in
./pablo/Makefile.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
./config/commence.in
./config/conclude.in
./config/depend.in [REMOVED]
./config/depend1.in [NEW]
./config/depend2.in [NEW]
./config/depend3.in [NEW]
./config/depend4.in [NEW]
./config/dependN.in [NEW]
The directory search stuff was moved into commence.in, thereby
shortening the Makefile.in prologues.
./doc/html/Dependencies [NEW]
./doc/html/Tutor/Dependencies [NEW]
./examples/Dependencies [NEW]
./src/Dependencies [NEW]
./test/Dependencies [NEW]
./testpar/Dependencies [NEW]
./tools/Dependencies [NEW]
The `.distdep' files were all renamed to `Dependencies' to make them
more obvious. They are required (but may be empty) in every directory
that has a Makefile.in that ends with @CONCLUDE@ (you'll get an
obvious error from make if you forgot to create one).
./bin/trace
./src/H5.c
Added H5E_major_t and H5E_minor_t although tracing only prints the
integer value.
./src/H5E.c
./src/H5Epublic.h
Added tracing information.
./src/H5FDcore.c
./src/H5FDfamily.c
./src/H5FDgass.c
./src/H5FDmpio.c
./src/H5FDsec2.c
./src/H5FDstdio.c
Fixed places where FUNC_LEAVE() evaluated it's argument more than
once.
Added tracing information.
Wrapped long lines.
./config/gnu-flags
Fixed a syntax error when we don't have a gnu compiler.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug fix.
Description:
If the H4DUMP (hdp) is not executable for some reasons (e.g., not
in $PATH), it produced zero sized files. The test script did not
detect the abnormality but compared the zero sized files the same
and concluded the test passed.
Solution:
Test if H4DUMP can produce valid output. If not, print warning
messages. Also check the size of output files to make sure they
are reasonably valid.
Platform tested:
Linux.
|
|
|
|
|
|
|
|
| |
stores the info
into the tables into the tools lib.
h5findshd-had some of the same functions so i removed them for now
|
| |
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./configure.in
./src/H5config.h.in [REGENERATED]
The /usr/ncsa/{include,lib} directories are only added if they
actually exist. This fixes a warning on some systems.
Checks for the <pdb.h> header file and also for either the PDB or Silo
library, and if found prepares to compile the pdb2hdf program.
./config/distdep
Relative path names for include files are changed to base names since
the makefile contains the logic for searching and since it's likely
that building the .distdep files happed from a location other than
where they would be used in the file system.
./config/conclude.in
Fixed shell errors when `for' loops iterate over nothing for the
`uninstall' target.
./src/H5D.c
./src/H5Oefl.c
File names for the external files are added to the heap when the
dataset is created instead of when the object header is written. This
fixes a rare infinite recursion bug.
./src/H5FD.c
./src/H5FDpublic.h
Optimization to the free list causes H5FD_alloc() usage to go from >10
seconds to <0.4 second for one example (converting a 30MB equation of
state file from PDB to HDF5 format). The optimization is to simply
keep track of the largest item in the free list and not search the
free list when the largest item is not big enough to satisfy the
request.
./src/H5FDcore.c
./src/H5FDcore.h
./test/h5test.c
If the `backing_store' property is true then a flush causes the entire
contents of memory to be written to the specified file. This is in
preparation for the ASCI/red optimizations and is currently tested by
the pdb2hdf `--cached' switch.
./src/H5Odtypes.c
Wrapped three long lines.
./tools/Makefile.in
./tools/pdb2hdf.c [NEW]
A PDB-to-HDF5 translator. It only translates meta data -- the
resulting HDF5 points into the PDB file for the raw data.
|