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* Merge remote-tracking branch 'origin/develop' into env_vol_loadQuincey Koziol2019-04-0311-147/+247
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-04-031-7/+7
| |\ | | | | | | | | | | | | | | | | | | | | | * commit '844f38c6462f42a9a3a6002de6a4acb0520b8fb7': Correct entry Snapshot version 1.11 release 4. Update version to 1.11.5. Allow option to select NAMESPACE Correct examples for packaging
| | * Snapshot version 1.11 release 4.hdftest2019-04-011-7/+7
| | | | | | | | | | | | Update version to 1.11.5.
| * | HDFFV-10741 - add option to skip tool error stack testsAllen Byrne2019-03-268-140/+228
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| * Added the HDopen work-around on windows to pio_engine.cDana Robinson2019-03-151-0/+6
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| * Adds _wopen support on Windows so that files with UTF-8 namesDana Robinson2019-03-151-0/+6
| | | | | | | | | | | | can be opened. Fixes: HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691
* | Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-103-4/+15
|/ | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-1516-152/+134
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* Refactor mpi test namesAllen Byrne2019-02-112-10/+10
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* Rename parallel tests to start with PAR_Allen Byrne2019-02-111-1/+1
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* Distinguish parallel performance testsAllen Byrne2019-02-111-2/+2
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* Refactor out timeout valuesAllen Byrne2019-02-061-1/+1
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* Fail configure if SZIP/ZLIB is requested but not foundAllen Byrne2019-02-051-4/+2
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* Invalid position of declaration fixed.Allen Byrne2019-01-251-1/+2
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* Merge pull request #1479 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-241-1/+2
|\ | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop HDFFV-10586 and HDFFV-10588 * commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a': Added test for HDFFV-10588 Fixed HDFFV-10684 Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-157-24/+0
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | Fixed HDFFV-10586 and HDFFV-10588Binh-Minh Ribler2019-01-151-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* | | Fix typoAllen Byrne2019-01-181-1/+1
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* | | Fix missing depends for last repart testAllen Byrne2019-01-181-9/+16
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* | Merge pull request #1441 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-091-1/+16
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8': Fixed typo Platforms tested: Darwin (osx1010test) Refixed HDFFV-10578 Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test) Removed previous change in H5O__chunk_deserialize(). Removed the previous change in H5O__chunk_deserialize() Removed previous change in table_list_add(). Removed the previous change in table_list_add() Updated per review Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly) HDFFV-10578 and HDFFV-10676 Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error.
| * Fixed typoBinh-Minh Ribler2019-01-081-1/+1
| | | | | | | | | | Platforms tested: Darwin (osx1010test)
| * Refixed HDFFV-10578Binh-Minh Ribler2019-01-081-1/+16
| | | | | | | | | | | | | | | | | | | | | | | | Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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| * Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-061-2/+2
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | HDFFV-10578 and HDFFV-10676Binh-Minh Ribler2019-01-061-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error. In H5O__chunk_deserialize, replaced an assert with an if statement and reporting error, per Neil's recommendation HDFFV-10676 - CVE-2018-13873 Also in H5O__chunk_deserialize, added an assertion to detect out of bound ids
* | | Updated error stacks for h5dump testing.Quincey Koziol2019-01-067-24/+0
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* | Fix runtest case for data to stdout in toolAllen Byrne2018-12-311-2/+2
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* Remove unused CMake filesAllen Byrne2018-12-212-65/+0
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* HDFFV-10656 Add CHECK_VOL support to CMakeAllen Byrne2018-12-203-39/+139
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* Use H5I_INVALID_HIDAllen Byrne2018-12-151-1/+1
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* HDFFV-10632 update autotools test scripts to match cmakeAllen Byrne2018-12-069-61/+230
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* HDFFV=10632 test cleanupAllen Byrne2018-12-0615-168/+2
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-12-0520-205/+286
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '55e87e5b86aacbb37c57614cd2e869541291caad': (51 commits) Correct Windows build. Refactor allocating & releasing pass through wrapper objects. Fix typo Remove duplicated comment. Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector. Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value. Correct "make check-vol" regression test target. Switch H5VL_class_value_t from enum to unsigned integer Add support for "make check-vol", along with a few minor cleanups, etc. Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header. Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory. Add pass-through VOL connector Update API tracing info for VOL functions and regenerate trace macros for VOL API calls. Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks. Add using FAPL from h5_fileaccess() to more tests. Remove unused test for unimplemented routine. Switch loc_params to VOL callbacks to pass struct by pointer instead of by value. Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object. Revert some of the changes to support the original property list value of metadata read attempts. Add VOL connector info to the flie access property list returned from H5Fget_access_plist(). Also, other misc. cleanups, etc. ...
| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-187-30/+466
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| * \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-121-2/+2
| |\ \ | | | | | | | | | | | | stackable_vol
| * | | Switch tool error output to match VOL changes within libraryQuincey Koziol2018-11-1220-205/+286
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| * | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-0722-634/+630
| |\ \ \ | | | | | | | | | | | | | | | stackable_vol
| * \ \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-041-12/+0
| |\ \ \ \ | | | | | | | | | | | | | | | | | | stackable_vol
| * | | | | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-2520-27/+27
| | | | | | | | | | | | | | | | | | | | | | | | modified: test/dsets.c
* | | | | | Fix special macro stdout as emptyAllen Byrne2018-12-051-0/+1
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* | | | | | Need nonexistent file to skip stdout compareAllen Byrne2018-12-053-0/+3
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* | | | | | HDFFV-10632 - split stderr and stdout in cmakeAllen Byrne2018-12-0371-89/+314
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* | | | | HDFFV-10601: Some compiler doesn't support clock_gettime(). So I changed to ↵Songyu Lu2018-11-161-77/+25
| | | | | | | | | | | | | | | | | | | | use gettimeofday (HDgettimeofday in the HDF5 library).
* | | | | Merge pull request #1316 in HDFFV/hdf5 from ↵Ray Lu2018-11-153-2/+469
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash to develop * commit 'cd13d24e5140578a880aebe4e2d8b899179d0870': HDFFV-10601: I added error checking to the HDF5 functions. HDFFV10601: Adding performance test to verify the improvement. HDFFV-10601: I changed to a better way to calculate the number of chunks in a dataset. HDFFV-10601 Issues with chunk cache hash value calcuation:
| * | | | | HDFFV-10601: I added error checking to the HDF5 functions.Songyu Lu2018-11-141-65/+161
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| * | | | | HDFFV10601: Adding performance test to verify the improvement.Songyu Lu2018-11-133-2/+373
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* | | | | Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-144-28/+49
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* | | | Fix target files for commandsAllen Byrne2018-11-091-2/+2
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* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-11-067-90/+102
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '1652a60fcbe9894d7c34a778fb24dce1979fb9a9': HDFFV-10605 Only test plugins if SHARED enabled Correct platforms Correct extlib depends Commit version changes for additional files for 1.11.3 snapshot release.
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