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* [svn-r1151] Changes since 19990318Robb Matzke1999-03-194-7/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./config/commence.in ./config/conclude.in ./config/dec-osf4.x ./config/depend.in ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/solaris2.x ./examples/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./tools/testh5dump.sh Changes that allow hdf5 to be configured and compiled in a directory other than the source directory. This is especially useful if you want to concurrently compile with different compilers and/or compile flags, or if the hdf5 source is on read-only media like a CDROM. The changes were surprisingly easy ;-) Here's what you can do now... $ mkdir /tmp/build1 # or something $ cd /tmp/build1 $ /cdrom/hdf5/configure # where ever the source is $ make Paul, you'll have to change the testh5toh4 script similar to the way I changed testh5dump.sh. I started working on it but then gave up because of a number of problems: (1) I had to comment out all the tests that let h5toh4 choose the output file name because it always tried to put the output file in the same directory as the input file, (2) if path names are used during the h4 dump then they interfere with the diff. The test works fine when run in the source directory, but try this instead: $ gunzip <hdf5-1.1.67.tar.gz |tar xf - $ chmod -R ugo-w hdf5-1.1.67 $ mkdir build $ cd build $ ../hdf5-1.1.67/configure $ make check Dan, I didn't modify the pablo/Makefile.in because I have no way to test it. I think all you need to do is add a couple lines before the @COMMENCE@ line and add a couple search directories for header files. Anyway, it seems like almost an exact duplicate of the src/Makefile.in, so it shouldn't be a problem... ./Makefile.in Removes a few more temporary files during make clean and distclean. ./configure.in I fixed the creation of the time-stamp files so that the initial make doesn't have to regenerated all the makefiles (only GNU make users will see any change). ./src/H5R.c Changed a return type from `intn' to `int' for an API function. ./src/H5detect.c Added the volatile qualifier to a couple more variables. ./tools/h5tools.c Fixed a compiler warning about an unused local. ./tools/h5toh4.c Initialized `optind' to 1 because it's zero on my system. It should always be one on a unix system. ./tools/testh5toh4 Redirected "broken pipe" messages to /dev/null so outut is formatted correctly.
* [svn-r1149] ./configure.inRobb Matzke1999-03-181-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h Temporarily commented out the code that tries to link a simple MPI-IO application because I'm not sure how to pass $LDFLAGS and $LIBS to the compiler. Removed the `--enable-parallel=ibm' switch because the library we link with is either -lmpcc or -lmpcc_r but not both. The only way to tell is to see what compiler was specified (mpcc or mpcc_r) but if that compiler is specified then we don't need any libraries (the compiler script supplies them). That leaves just two choices: the user must use a compiler script: CC=mpcc ./configure or the user must state which library is desired: LDFLAGS='-lmpcc' ./configure --enable-parallel Checks for <setjmp.h>, longjmp(), and signal(). We don't check for setjmp() because it could be a macro (in fact, Posix requires it to be a macro) and if longjmp() is present then setjmp() is probably present too ;-) ./src/H5detect.c The alignment detection loop uses SIGBUS and setjmp/longjmp instead of fork/wait in order to get around bugs with forking in conjunction with mpich. This hasn't been tested on the SP-2 yet but it does work on the DEC Alpha. ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Changed the order that libraries are linked so -lhdf5 is always before $LDFLAGS.
* [svn-r1117] Changes since 19990303Robb Matzke1999-03-041-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] The path for a command is calculated explicitly the hard way because `type -path' isn't portable. ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc2 Changed the way files reference each other. ./config/gnu-flags [NEW] ./config/dec-flags [NEW] These files figure out what flags to pass to certain compilers so we can reuse code in more than one config/* file. They also have better warning messages when old compilers are used. ./config/linux-gnulibc1 ./config/dec-osf4.x These files use the new *-flags files. ./src/H5D.c ./src/H5Onull.c ./src/H5Tconv.c ./tools/h5ls.c Fixed a compiler warning. ./src/H5detect.c Added a better comment to the top of the generated file.
* [svn-r1115] Changes since 19990302Robb Matzke1999-03-031-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Improvements for parallel library. If you have a properly working mpicc you should be able to just say: $ CC=mpicc ./configure and you will see checking for mpirun... /usr/local/mpi/bin/mpirun checking for parallel support files... skipped checking how to run on one processor... /usr/local/mpi/bin/mpirun -np 1 checking how to run in parallel... /usr/local/mpi/bin/mpirun -np $$NPROCS To quote from the INSTALL file.... *** Parallel vs. serial library The HDF5 library can be configured to use MPI and MPI-IO for parallelizm on a distributed multi-processor system. The easy way to do this is to have a properly installed parallel compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that executable as the value of the CC environment variable: [NOTE: mpcc is not tested yet] $ CC=mpcc ./configure $ CC=/usr/local/mpi/bin/mpicc ./configure If no such wrapper script is available then you must specify your normal C compiler along with the distribution of MPI/MPI-IO which is to be used (values other than `mpich' will be added at a later date): $ ./configure --enable-parallel=mpich If the MPI/MPI-IO include files and/or libraries cannot be found by the compiler then their directories must be given as arguments to CPPFLAGS and/or LDFLAGS: $ CPPFLAGS=-I/usr/local/mpi/include \ LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \ ./configure --enable-parallel=mpich If a parallel library is being built then configure attempts to determine how to run a parallel application on one processor and on many processors. If the compiler is mpicc and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpirun' from the same directory as `mpicc': RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1 RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2} The `$${NPROCS:=2}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 2). ./testpar/Makefile.in Saying `make check' (or `make test') will run the tests on two processors by default. If you define NPROCS then that many processors are used instead: $ NPROCS=4 make check ./configure.in Fixed (hopefully) bugs with detecting whether __attribute__ and __FUNCTION__ are special keywords for the compiler. ./Makefile.in Saying `make install' from the top level directory shows instructions for using shared libraries. ./config/commence.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Moved the @top_srcdir@ into the makefiles because it was expanded too early and had the wrong value. ./INSTALL Added a warning that if the wrong version of hdf4 tools are installed then `make check' will fail in the tools directory.
* [svn-r1112] Changes since 19990301Robb Matzke1999-03-021-12/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Reorganized and added some additional examples. ./MANIFEST ./aclocal.m4 [NEW] ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./bin/ltconfig [NEW] ./bin/ltmain.sh [NEW] Added tests to determine how to compile shared libraries and how to link programs with them before the libraries are installed. Also how to install and uninstall shared libraries. The configure step also prints the names of the config files it's trying to load for easier debugging. ./bin/config.guess ./bin/config.sub Replaced with a newer version from GNU. The changes we made to that file to report `irix6.x' and `FreeBSD' without version numbers have been incorporated into configure.in instead. In the future, do not change these two files (see the top of configure.in instead). By the way, this update was required to get shared libraries working. ./config/linux [REMOVED] ./config/linux-gnulibc1 [NEW] ./config/linux-gnu [NEW] ./config/alpha-dec [REMOVED] ./config/alpha-dec-osf4.0 [REMOVED] ./config/dec-osf4.x [NEW] ./config/irix5.3 [REMOVED] ./config/irix5.x [NEW] ./config/irix64 [REMOVED] ./config/freebsd Moved config files around to agree with output from the new config.guess. The linux file was split into gnu (RedHat), gnulibc1, and gnulibc2 versions. The alpha-dec file was removed (I think it was unused) and the alpha-dec-osf4.0 was changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and the irix64 file was renamed to irix6.x. The freebsd file was changed to point to linux-gnulibc1. These changes were tested on: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 OSF1 4.0 ./config/alphaev56-dec-osf4.x ./config/irix64 Added warnings similar to linux/freebsd about using compilers with known bugs. ./config/commence.in ./config/conclude.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Added definitions for shared libraries. This has been tested on the following systems: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 static only OSF1 4.0 If you want to disable use of shared libraries (you probably do for development purposes since it takes a lot longer to compile and because you have to run dynamically linked programs in a special way if the library hasn't been installed) then add `--disable-shared' to the configure command line. This is all documented in the INSTALL file. ./bin/release Temprarily commented out the MANIFEST checking when running under svf since svf is about to be replaced by a newer version. This change only affects error checking during the release process. ./Makefile.dist ./Makefile.in Added `make check' which does the same thing as `make _test' since the former is endorsed by the GNU coding style and people are used to it. The old `make _test' still works too (and so does `make test' if you use GNU make).
* [svn-r1101] Changes since 19990219Robb Matzke1999-02-251-4/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/irix64 The old (-32) compiler is now supported by setting envrionment CC='cc -32'. The -64 compiler is the default or you can set CC='cc -64'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5G.c ./src/H5I.c ./src/H5Ocomp.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Z.c ./src/H5detect.c ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/enum.c ./test/mtime.c ./test/ohdr.c ./tools/h5ls.c Fixed lots of warnings on Irix64. Mailed a few remaining warnings in H5S to Quincey and a few in the dumper to Ruey-Hsia.
* [svn-r1074] Purpose:Paul Harten1999-02-171-9/+9
| | | | | | | | | | | | | | | Bug Fixes Problem: Warnings given during compilation on some machines. Solution: Take care of various Compiler Warnings such as: 1) uninitialized variables; 2) unreachable statements. Platforms tested: Solaris2.5, Linux, Irix6.5
* [svn-r1065] Changes since 19990121Robb Matzke1999-02-151-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5public.h ./src/H5Omtime.c Check for <stddef.h> Checks for `__tm_gmtoff' in `struct tm' because old versions of GNU libc are different than recent versions. This fixes the failing mtime test. ./bin/config.guess ./config/freebsd2.2.7 [REMOVED] ./config/freebsd [ADDED] Changed the name so it works with all versions of FreeBSD. ./src/H5.c Moved H5F after H5T and H5G in H5_term_library() to satisfy dependencies. ./src/H5G.c Fixed a bug that caused H5Gcreate() to fail if the group name had trailing slashes. ./src/H5Gpublic.h Changed `group_name' to `name' in a prototype. ./src/Makefile.in Dynamic library on Linux, but needs for work to be generally useful. ./src/H5HG.c ./src/H5HGprivate.h Fixed alignment problems when using old GCC compilers (like the one shipped with RedHad Linux). ./tools/h5ls.c Fixed a bug where the contents of the root group could be listed twice if there was a link back to the root group. Similarly for groups that are mentioned on the command line. Fixed a bug where unknown types were printed with a random type class number. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tprivate.h Fixed O(log N) conversion bugs.
* [svn-r1059] Purpose:Paul Harten1999-02-051-7/+30
| | | | | | | | | | | | | | | Bug fix Problem: Did a H5get_type() on a dataset of committed type without doing the associated H5Tclose(). This caused an abort to occur during the atexit() phase of the h5toh4 converter. Solution: Execute the associated H5Tclose(). Platform tested: Solaris2.5
* [svn-r1055] Purpose:Paul Harten1999-02-028-40/+55
| | | | | | | | | | | | | | | | Bug fix Problem: The hdp dumper output files used in the h5toh4 converter test program have the result of the latest changes to the HDF4 library, but the converter was to maintain compatability with HDF4.1r2. Solution: Regenerate the HDF4.1r2 version of the hdp dumper ouput files to be used for the h5toh4 converter test program. Platform tested: Solaris2.5
* [svn-r1046] Purpose:Paul Harten1999-02-014-5/+580
| | | | | | | | | | | New feature Solution: Modified h5dumptst.c to generate more single dimension datasets of H5T_STRING type held in file tstr2.h5. Platform tested: Solaris2.5
* [svn-r1045] Purpose:Paul Harten1999-02-011-0/+11
| | | | | | | | | | New feature Solution: Add string conversion testers Platform tested: Solaris2.5
* [svn-r1044] Purpose:Paul Harten1999-02-011-9/+341
| | | | | | | | | | | | | New feature Solution: Changes to support conversion of 1-dimensional HDF5 datasets of H5T_STRING type into HDF4 Vdatas. Also, support conversion of HDF5 attribute of string type into HDF4 attribute of INT8 type. Dimensional information is lost. Platform tested: Solaris2.5
* [svn-r1041] Added the string test file.Ruey-Hsia Li1999-02-011-0/+0
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* [svn-r1040] Added the expected output for string test.Ruey-Hsia Li1999-02-011-0/+435
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* [svn-r1039] Added string tests and temporarily disabled test_compound_dt2() ↵Ruey-Hsia Li1999-02-017-90/+397
| | | | | | test. Reflected the format changes to the expected output.
* [svn-r1038] Did some work on the output format for compound data and string.Ruey-Hsia Li1999-02-014-478/+524
| | | | Also added test script for string.
* [svn-r1032] Changes since 19990118Robb Matzke1999-01-213-70/+510
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5tools.c Strings are not converted to null-padding before being printed; they are printed with whatever byte values appear in the file. ./tools/h5ls.c Now able to display attribute data type and data. Added a `-f' or `--full' switch which causes the full name of each object to be displayed instead of just the base name. Added a `-r' or `--recursive' switch that recursively prints the contents of groups, avoiding cycles. More bulletproofing for non-printable characters in things like object names, attribute names, and comment strings. We don't want listing a file to send termal escape sequences because it's sometimes possible to execute commands that way. Since h5ls doesn't usually use quotes around object names we must sometimes escape space characters. External files are listed in a table to make the output less confusing. ./tools/h5tools.c ./tools/h5tools.h Changed h5dump() to h5dump_dset() and added h5dump_mem(). Also make h5dump_fixtype() public. ./test/dtypes.c Wrote some data to an attribute to test h5ls attribute printing. ./src/H5ACprivate.h ./src/H5Apublic.h ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5Epublic.h ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gprivate.h ./src/H5HLprivate.h ./src/H5Oprivate.h ./src/H5Ppublic.h ./src/H5RApublic.h ./src/H5Rpublic.h ./src/H5Spublic.h ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5Vprivate.h ./src/H5Zpublic.h ./src/H5private.h ./src/H5public.h Reindented function prototypes after `HDF5API' was added. Also rewrapped long lines. ./src/H5Flow.c Added an `#ifdef WIN32' around an unused variable. ./src/H5api_adpt.h Removed extra carriage returns inserted by "broken" operating system. ./src/H5Dprivate.h ./src/H5Oprivate.h ./src/H5Vprivate.h ./src/H5private.h Removed extraneous inclusion of H5api_adpt.h since it's included in H5public.h which is included by everything. ./src/Makefile.in Added H5api_adpt.h to the list of public header files to fix broken `make install'.
* [svn-r1026] Changes since 19990118Robb Matzke1999-01-201-1/+0
| | | | | | | | | ---------------------- ./tools/h5tools.c Strings are not converted to null-padding before being printed; they are printed with whatever byte values appear in the file.
* [svn-r1021] Purpose:Paul Harten1999-01-122-18/+40
| | | | | | | | | | | | | | | | Bug fix Problem: Segmentation fault when attempting to free NULL or uninitialized pointers. Problem noticed on Linux and HPUX10.20 platforms. Solution: Initialialize the pointer to NULL. Execute the "free" statement upon the condition that the pointer is not equal to NULL (i.e. after the allocation has taken place.) Platform tested: Linux, HPUX10.20, Solaris2.5
* [svn-r1012] Changes since 19981217Robb Matzke1999-01-072-5/+124
| | | | | | | | | | ---------------------- ./tools/h5ls.c Displays enumeration type information. ./tools/h5tools.c Displays enumerated data using symbol names.
* [svn-r1006] Updated output against the current version of the HDF4 dumper in ↵Quincey Koziol1999-01-068-39/+39
| | | | CVS.
* [svn-r1004] Purpose:Paul Harten1999-01-053-11/+84
| | | | | | | | | | | | | | | | Conform closer to other test print-out. Solution: Added "All h5dump tests passed." statement to output of testh5dump.sh when appropriate. Similarly, added "All h5toh4 tests passed." statement to output of testh5toh4 when appropriate. Also, added the testing of converting H5 files with loop pathways into H4 files with recursive references. Platforms tested: Solaris2.5, Digital Unix 4.0
* [svn-r1003] Fixed a couple of typosQuincey Koziol1999-01-052-3/+2
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* [svn-r1000] Purpose:Paul Harten1998-12-301-4/+11
| | | | | | | | | | | | | | | | | Conform closer to other test print-out. Problem: Multiple "PASSED" statements for single test results when test involves conversion of multiple files. Should be single "PASSED" statement for test results. Solution: "*FAILED*" statement given if conversion fails for any file. Differences given between expected results and actual results for each file that fails. "PASSED" statement given when conversion is successful for all files. Platform tested: Solaris2.5
* [svn-r989] Purpose:Paul Harten1998-12-221-2/+22
| | | | | | | | | | Bug fix Solution: Have warning messages go to stderr instead of stdout. Platform tested: Solaris2.5
* [svn-r988] Purpose:Paul Harten1998-12-221-215/+151
| | | | | | | | | | | | | New feature, Documentation Solution: Changed h5toh4 testing output to more closely resemble other HDF5 testing output. Also added documentation to describe the puposes of the conversion test files. Platform tested: Solaris2.5
* [svn-r983] Added tests in testh5dump.sh.Ruey-Hsia Li1998-12-214-215/+349
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Features of this version of dumper * loop detection * data type ** atomic type -> H5T_INTEGER (H5T_STD_XXXXX) -> H5T_FLOAT (H5T_IEEE_XXXXX) -> H5T_STRING (H5T_C_S1, H5T_FORTRAN_S1) ** committed/transient/unamed compound type * data space ** scalar space ** simple space * dataset dumper can display dataset's ** attribute ** type ** space ** data * group dumper can display group attributes and group members which include ** named/unamed data type ** group ** dataset ** softlink * attribute dumper can display attribute's ** type ** space ** data * hard link * soft link * format of data ** fit on 80 columns ** end of line after each row (more work will be done on data.)
* [svn-r982] Added test for loop detection.Ruey-Hsia Li1998-12-2124-443/+349
| | | | | Updated expected output for dumper automatic tests. Removed redundant tests.
* [svn-r978] Purpose: Bug fixesPaul Harten1998-12-213-260/+1051
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Problems: There were three separate bugs in the h5toh4 converter worked on. They were: 1) When a loop was detected, the H4 file was missing references to paths which were available in the H5 file. 2) When an H4 SDS or Vdata was created from a H5 dataset, the H4 object was referenced in the root group, instead of the correct Vgroup. 3) The FIRST path taken to an object for the h5toh4 conversion could not involve a SOFTLINK. Solutions: The bug fixes were: 1) All of the associated references to available paths which occur in the H5 file, now appear in the H4 file. 2) After an H4 SDS or Vdata is created from a H5 dataset, the H4 object is tag/ref'ed in the appropriate Vgroup. 3) The FIRST path taken to an H5 object for the H5toh4 conversion may involve a HARDLINK, a SOFTLINK, or neither. The same is true of any additional paths to the same object. Platform tested: Solaris2.5
* [svn-r977] Purpose:Paul Harten1998-12-2132-500/+1317
| | | | | | | | | | | | New feature Solution: Added some new new tests to show that paths involving HARDLINKS and paths involving SOFTLINKS convert existing objects from H5 to H4 the same way that paths involving no links does. Platform tested: Solaris2.5
* [svn-r975] Put back Paul's updates.Ruey-Hsia Li1998-12-181-0/+200
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* [svn-r973] Added tests for scalar data space, string data type, loop ↵Ruey-Hsia Li1998-12-171-227/+117
| | | | | | detection and compound data type.
* [svn-r971] Changes since 19981214Robb Matzke1998-12-1726-220/+110
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warning that enabling debugging code can adversely affect performance even when the debugging isn't turned on at run-time. Performance testing shows that under certain circumstances (like data type conversions of compound types) the H5_timer functions, although only a few lines each, contribute a fairly large percent to the execution time. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tpublic.h Improved the H5Tunregister() function to make unregistering more flexible. It takes the same arguments as H5Tregister() but also accepts wild cards. All conversion functions that match the H5Tunregister() search criteria are removed from the global type conversion table. The H5Tregister_hard() and H5Tregister_soft() were combined into a single function called H5Tregister() which is the counterpart to H5Tunregister(). A new `persistence' argument was added to differentiate between the two types of conversion functions. The application is allowed to register a hard conversion function for the no-op conversion path although the library isn't obligated to call it (it usually does). This is mostly for completeness, but the application might use it to help determine if the raw data pipeline was able to use the optimized path for the case when no type conversion is necessary. The library doesn't allow this path to be unregistered although the application can redefine it as often as it likes. Fixed the type conversion tables in preparation for MT-safety and to fix previosly-known design bugs wrt. unregistering conversion functions or changing the C function associated with a conversion path. The MT-safety stuff is documented in a separate white paper. Increased the conversion function debugging name from 9 characters to 31 characters so the output can be more descriptive. Moved conversion path statistics from the H5T_cdata_t member into the conversion path itself. This makes H5T_cdata_t contain only application-visible data structures. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c Improved the way type conversion functions are called so the caller doesn't have to check for data type debugging and increment type conversion timers and statistics. Changed check for no-op conversion since it is now application-definable and there may even be more than one definition at a time in a multi-threaded application (one thread might be using the no-op conversion path when some other thread changes its definition -- the first thread still sees the original defintion until it's done with the operation). ./doc/html/Datatypes.html Updated the user guide to reflect the changes to data type conversion registration functions. ./bin/trace ./src/H5.c Added tracing support for the new H5T_pers_t data type. ./test/dtypes.c Added printf to display alignment value if non-aligned data types are being tested. ./test/h5test.c Modified the H5Tunregister() calls to use the new arguments. All 94 of those calls can be replaced by a single call to the new H5Tunregister() function. ./src/H5.c Added HAVE_GETTIMEOFDAY around an auto variable and initialized the elapsed time to zero when gettimeofday() is not available. ./src/H5F.c ./src/H5Fprivate.h ./src/H5P.c Added an H5*_init() functions which do the same thing as H5*_init_interface() but can be called from other packages and don't do anything if the interface is already initialized. This fixes a couple memory leaks in applications that repeatedly close and open the library with H5close(). ./src/H5Tconv.c Optimized some data alignment code in the hardware conversion functions. Hardware conversions accumulate statistics about source and destination data alignment and print that information when the conversion function is unregistered (usually when the application exits) if data type debugging is compiled into the library and enabled at run-time. The conversion caching was cleaned up for the compound data type conversion function. It now caches conversion paths in a manner that will be MT-safe and is much simpler than the old method. Also cleaned up some array index maps. ./src/H5detect.c Fixd mispelling of alingemnt. ./src/H5private.h Changed `TRUE' to `1' in assignment to interface_initialize_g in FUNC_ENTER macro definition. ./tools/testh5dump.sh Completely rewritten to make it shorter, better documented, and conforming to most of the other test outputs. The comparison of the actual output with the expected output is insensitive to differences in white space. The test now passes for the first time on Linux where the output width wasn't as expected but the output was otherwise correct. ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl ./tools/testfiles/tall-3.ddl ./tools/testfiles/tattr-1.ddl ./tools/testfiles/tattr-2.ddl ./tools/testfiles/tattr-3.ddl ./tools/testfiles/tattr-4.ddl ./tools/testfiles/tcomp-1.ddl ./tools/testfiles/tcomp-2.ddl ./tools/testfiles/tcomp-3.ddl ./tools/testfiles/tcomp-4.ddl ./tools/testfiles/tdset-1.ddl ./tools/testfiles/tdset-2.ddl ./tools/testfiles/tdset-3.ddl ./tools/testfiles/tdset-4.ddl ./tools/testfiles/tgroup-1.ddl ./tools/testfiles/tgroup-2.ddl ./tools/testfiles/tgroup-3.ddl ./tools/testfiles/tlink-1.ddl ./tools/testfiles/tlink-2.ddl ./tools/testfiles/tlink-3.ddl ./tools/testfiles/tlink-4.ddl ./tools/testfiles/tlink-5.ddl ./tools/testfiles/tslink-1.ddl ./tools/testfiles/tslink-2.ddl Changed `../h5dump' to just `h5dump'. ./config/alpha-dec-osf4.0 Added more warning and optimization switches to the native compiler.
* [svn-r958] Purpose:Paul Harten1998-12-0111-203/+901
| | | | | | | | | | | New feature Solution: Testing of Extendable Dataset support in h5toh4 converter when extendable dimension is first dimension. Platform tested: Solaris2.5
* [svn-r953] Purpose:Paul Harten1998-11-251-1/+1
| | | | | | | | | | | | | | | | | | | | | Getting rid of Warning messages. Problem: When compiling with DEBUG_H5TOH4 turned off, macro expansion of DEBUG_PRINT gives many warning messages. Solution: Set macro expansion of DEBUG_PRINT to: #ifdef DEBUG_H5TOH4 #define DEBUG_PRINT(s1,s2,s3,n1) ( fprintf(stderr,s1,s2,s3,n1) ) #else #define DEBUG_PRINT(s1,s2,s3,n1) ( fprintf(stderr," ") ) #endif Platform tested: Solaris2.5
* [svn-r952] Changes since 19981125Robb Matzke1998-11-256-12/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/Datatypes.html ./src/H5.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5detect.c ./test/chunk.c ./test/dtypes.c ./test/h5test.c ./test/mtime.c ./test/tattr.c ./test/th5s.c ./tools/h5dump.c ./tools/h5dumputil.c ./tools/h5import.c ./tools/h5ls.c ./tools/h5toh4.c ./tools/h5tools.c Renamed the old H5T_NATIVE_CHAR type to H5T_NATIVE_SCHAR to denote that it is always signed. Added a new H5T_NATIVE_CHAR type which has the same range, representation, and behavior as either H5T_NATIVE_SCHAR or H5T_NATIVE_UCHAR depending on the compiler and its command-line switches for the application source file which references H5T_NATIVE_CHAR. If source files are compiled with different switches then each source file will resolve H5T_NATIVE_CHAR appropriately so it matches the C type `char' in that source file. NOTE: THERE ARE OTHER DOCUMENTATION FILES THAT I DIDN'T CHANGE BECAUSE I CAN'T MODIFY THE SOURCE. ./test/extend.c Swapped two lines to prevent diagnostic messages from messing up the formatted output.
* [svn-r942] PURPOSE:Paul Harten1998-11-213-2/+1451
| | | | | | | | | | | | | | | | | | | | | | | | | New Feature SOLUTION: h5toh4 is an H5 utility which converts HDF5 files into HDF4 files. It converts only those H5 objects which have have mappings into H4 objects. Some H5 objects that may be converted into H4 objects are: 1) H5 group objects may be converted into H4 Vgroup objects. 2) H5 dataset objects of integer or floating point datatype may be converted into H4 SDS objects. 3) H5 dataset objects of compound datatype and rank 1 may be converted into H4 Vdata objects. Field members of the compound datatype are constrained to be single dimensional. Platforms tested: Solaris2.5, HP10.20
* [svn-r941] Purpose:Paul Harten1998-11-211-0/+302
| | | | | | | | | | | | | New feature Solution: This file contains routines to find all shared objects and committed types and store them in tables. These routines are made available in the library hdf5/tools/libh5tools.a Platform tested: Solaris2.5, HP10.20
* [svn-r940] Purpose:Paul Harten1998-11-217-0/+1884
| | | | | | | | | | | | | | | New Feature Solution: These files are the expected results of the HDF4 hdp dumper, which has been executed in the following order: hdp dumpvg file.hdf > file.dmp hdp dumpvd file.hdf >> file.dmp hdp dumpsds file.hdf >> file.dmp Platform tested: Solaris2.5, HP10.20
* [svn-r939] Purpose:Paul Harten1998-11-211-0/+260
| | | | | | | | | | | | | | | | | New Feature Solution: This is a tester for the h5toh4 converter. It is implemented on different HDF5 files to produce HDF4 files. After each HDF4 file is produced, the file is run through the HDF4 dumper hdp. The dumper results are compared with expected results and any differences are noted. Note: The "/hdf4/bin" directory needs to be part of the tester's $PATH. Platform tested: Solaris2.5, HP10.20
* [svn-r929] Changes since 19981119Robb Matzke1998-11-193-13/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./test/flush2.c ./test/overhead.c Removed carriage-returns inserted by a broken operating system. ./test/big.c ./test/mtime.c ./test/ragged.c ./tools/h5ls.c Removed inclusion of <H5config.h>, system header files, and definition of __unused__ since this all happens in <H5private.h>. ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c ./test/fillval.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/overhead.c ./test/shtype.c ./test/unlink.c ./tools/h5import.c ./tools/h5repart.c Removed inclusion of <H5config.h> since <hdf5.h> includes it. ./test/flush1.c Includes <stdlib.h>, protects inclusion of <unistd.h> by using HAVE_UNISTD_H instead of STDC_HEADERS.
* [svn-r928] Changes since 19981118Robb Matzke1998-11-191-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5Smpio.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpublic.h ./src/H5detect.c ./src/H5private.h ./src/H5public.h ./test/big.c The `long long' type isn't quite as prevalent as we had hoped; there is at least one system that defines `__int64' but not `long long'. Therefore, I've temporarily changed all occurrences of `long long' to `long_long' and then #define that in H5private.h based on the existence of `long long' or `__int64'. This gets rid of some #ifdef's in other parts of the code. The semantics of the hdf5 types are: *int8_t Exactly one byte *int16_t At least two bytes. We favor 32-bit integers over 16-bit integers if the 16-bit integer is 4-bytes wide (Cray) *int32_t At least four bytes. *int64_t At least eight bytes long_long The widest integral integer type The H5Smpio.c contains debugging code which is non-portable. ./tools/h5ls.c Changed the order native types are detected so we favor the name `int' over `short' or `long' if two of them are the same. ./config/conclude.in Added a rule to make test programs depend on the hdf5 library. This fixes a minor bug where changing H5detect.c and then running `make test' caused H5Tinit.c to not be recompiled and therefore the test files are not relinked.
* [svn-r925] Changes since 19981116Robb Matzke1998-11-182-11/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL.parallel [NEW] We're beginning to unify some of the parallel installation steps. This file will contain general information for installing the parallel library. It's not complete yet. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Check for xdr_int() in libnsl required on Solaris when linking with hdf4. It's found on the Irix system I tested which complains that `-lnsl' didn't resolve any symbols. Oh well. Fixed the order of searching for libdf and libmfhdf for hdf4 linking. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5Z.c Check for compress() in libz in order to find older versions of the library that will still work for hdf4. Added a separate check for compress2() that hdf5 will use. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Sselect.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./test/bittests.c ./test/gheap.c ./test/hyperslab.c ./test/istore.c ./test/tmeta.c ./test/trefer.c ./test/tselect.c ./tools/h5debug.c ./tools/h5tols.c Added checks for Posix.1g types like `int8_t'. If not defined then H5private.h defines them. Changed all `int8' etc. to `int8_t'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Calling H5*_term_interface() resets interface_initialize_g to FALSE so a subsequent call to H5open() (implied or explicit) reinitializes global variables properly. ./src/H5private.h ./src/H5Oefl.c ./src/H5S.c Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they match the Posix.1 constants in <limits.h>. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5detect.c Added 36 more integer hardware conversion functions to the type conversion table for conversions to/from `long long' and `unsigned long long'. The `long long' names will be changed shortly to make them portable to Win32. Changed H5T_init() to H5T_native_open() and added an H5T_native_close() to open and close the predefined native data types. Increased the initial size of the type conversion table from 64 to 128 entries. Reordered the 90 new integer conversion functions so the names that are printed favor `int' over `short' or `long' when two of them are the same. ./test/dtypes.c Added hardware and software integer conversion tests for the 56 functions I added recently but not the additional 36 checked in this time. That will come next. Call H5close() after each test so type conversion statistics are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes Added more debugging output for when things go wrong. ./src/H5private.h Removed trailing carriage-returns inserted by broken operating system ;-)
* [svn-r920] changed the GROUP macro to be GROUPNAME since GROUP was used by ↵Patrick Lu1998-11-172-3/+3
| | | | | | the winsock2.h file
* [svn-r914] Changes since 19981113Robb Matzke1998-11-161-16/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in The Makefile $TESTS variable has finally been split into $TEST_PROGS and $TEST_SCRIPTS with the latter being the names of shell scripts that need to be run with `/bin/sh'. Now we don't have to copy each shell script before we run it. NOTE: THIS CHANGE DOES NOT AFFECT THE PABLO MAKEFILE SINCE THAT FILE IS A COPY OF A PREVIOUSLY GENERATED MAKEFILE. ./src/Makefile.in Added H5Snone.c to the source list. ./src/H5G.c Plugged a memory leak by emptying the object type "isa" table when the library is closed. ./src/H5Tconv.c ./src/H5Tpkg.h Added 48 new type functions to take advantage of hardware for integer type conversions. These functions are not registered in the conversion table yet because I haven't fully tested them. ./src/H5Tpkg.h Removed __unused__ qualifiers from prototypes.
* [svn-r907] Changes since 19981111Robb Matzke1998-11-131-15/+30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions about specifying a path for GNU zlib and HDF4 headers and library. Added comments for each of the tool names. Added h5toh4 as a tool name. ./configure.in ./conigure [REGENERATED] ./src/H5config.h.in [REGENERATED] The config/* scripts get invoked with $CC_BASENAME set the base name of the compiler in order to make it easier to handle setting compiler flags for different compilers in a big case statement. For instance, if $CC has the value /usr/local/mpi/bin/mpicc -ansi -64 then $CC_BASENAME will be `mpicc'. The $CC_BASENAME is not set if $CC is not set. Fixed alignment in `configure --help'. An include and/or library path can be specified for GNU zlib if configure can't find it in normal places. The "normal" means wherever your compiler normally searches, including search paths you've added through environment variables like CPPFLAGS and LDFLAGS. The INSTALL file has instructions. The `-ljpeg' library is detected. If `ssize_t' is not found then a #define is added to H5config.h similar to what we already do for `size_t'. We detect the hdf5 header file `mfhdf.h' and libraries `-lmfhdf' and `-ldf' and if found define the H5TOH4 and TESTH5TOH4 Makefile variables. The user can specify an include and/or library path. The INSTALL file has instructions. The `RUNTEST' variable has been split into `RUNSERIAL' and `RUNPARALLEL' because these are different commands. The makefile still uses `RUNTEST', which defaults to the RUNSERIAL value. The new testpar/Makefile.in sets RUNTEST to the RUNPARALLEL value. The default RUNSERIAL value is empty and the default RUNPARALLEL value is `mpirun -np 2'. These can both be overridden in the config/* files. To make the value the empty string set it like `RUNPARALLEL=none' in the config/* file. The new testpar/Makefile is generated from testpar/Makefile.in ./config/commence.in Added the RUNSERIAL and RUNPARALLEL makefile definitions. ./src/Makefile.in The `H5detect' program is run with RUNSERIAL, which is empty on all platforms except intel-osf1 (ASCI/Red) ./config/conclude.in Removed the `.c.a:' implicit rule -- we don't use it any more. ./config/BlankForm ./config/alpha-dec ./config/alpha-dec-osf4.0 ./config/freebsd2.2.7 ./config/hpux10.20 ./config/hpux9.03 ./config/intel-osf1 ./config/irix5.3 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 All of these files have been updated to hande multiple compilers. Most of them assume `cc' if CC is not set. The documentation in `BlankForm' has been updated and documentation in the other files refer to `BlankForm'. The intel-osf1 uses LDFLAGS instead of LIBS to specify the extra library search paths. ./examples/Makefile.in ./test/Makefile.in ./tools/Makefile.in Simplified by grouping some dependency information together more succinctly. The tools Makefile.in has been modified to work with the `h5toh4' and `testh5toh4' programs. Until Paul checks these in you may have problems compiling. If so, just create files h5toh4.c and testh5toh4.c that contain: #include <stdio.h> int main(int argc, char *argv[]) { fprintf(stderr, "%s: not implemented\n", argv[0]); return 1; } ./src/H5public.h Removed definition for `ssize_t' since this is now handled by configure in H5config.h with a #define. ./MANIFEST ./testpar/Makefile.in [NEW] Added a makefile for parallel tests. As soon as we get this working properly we can remove the other four makefiles in that directory and maintain just one.
* [svn-r900] Changes since 19981106Robb Matzke1998-11-114-33/+76
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5ls.c The chunk dimensions and total size is printed for chunked datasets. ./examples/h5_attribute.c ./examples/h5_select.c ./test/chunk.c ./test/iopipe.c ./test/ragged.c ./src/H5.c ./src/H5private.h ./src/H5public.h Removed extra carriage-return characters inserted by a broken OS :-) Reformatted strange-looking comments. Removed C++ comments. Wrapped long lines. ./examples/h5_attribute.c ./examples/h5_select.c Removed inclusion of private headers. Changed `uint32' (originally `uint') to `unsigned' because `int32' is not exported as part of the API. ./src/H5Fmpio.h Removed includes for <sys/types.h> and <sys/stat.h> since they're already included by H5private.h. All system include files should be included in H5private.h so we can wrap them with appropriate feature macros. ./tools/h5import.c ./tools/h5repart.c Included header files like all other programs in that directory. ./tools/h5tools.c Better type checking for `hsize_t' and `hssize_t'.
* [svn-r898] added an include for H5private.h and changed a uint to an uint32Patrick Lu1998-11-101-3/+3
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* [svn-r897] added a #ifdef HAVE_UNISTD_H around the unistd.h includePatrick Lu1998-11-102-2/+4
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