| Commit message (Collapse) | Author | Age | Files | Lines |
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Improvement
Description:
The stdout and stderr were both redirected to an output file. This
works fine in tradition sequential Unix machines. But in some
parallel systems (like mpi-jobs in IBM SP), the stderr is merged
with stdout alright but not in the exact order as expected. This
is not deterministic in parallel jobs. So, the test output are
all there but the ordering maynot be as expected.
Solution:
Redirect stderr to separated file and append it to the stdout
file after test-command is executed. Then compare it with
the expected output. This eliminate the assumption that
stdout and stderr must merged in "chronical orders".
The .ddl file are updated by moving all stderr text to the end of the
file.
Platforms tested:
eirene.
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Improvement
Description:
The stdout and stderr were both redirected to an output file. This
works fine in tradition sequential Unix machines. But in some
parallel systems (like mpi-jobs in IBM SP), the stderr is merged
with stdout alright but not in the exact order as expected. This
is not deterministic in parallel jobs. So, the test output are
all there but the ordering maynot be as expected.
Solution:
Redirect stderr to separated file and append it to the stdout
file after test-command is executed. Then compare it with
the expected output. This eliminate the assumption that
stdout and stderr must merged in "chronical orders".
Platforms tested:
tested in v1.4. Folded it into v1.5.
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Purpose:
check-in the second time to update the handling of data transfer in h4toh5.
This will make up for the cvs conflict checking a couple hours ago.
Description:
Solution:
Platforms tested:
eirene
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Purpose:
1) fix the implementation of image according to image specfication
2) fix two bugs of SDS implemention. the first one is
to handle the unlimited SDS with the first dimensional size set to 0.
the second one is to change the way how HDF5 dataset is written.
Description:
1) mapping 24-bit image to 3D arrays instead of 2D compound datatype.
2) previously forgot considering unlimited SDS with the size set to 0.
3) H5P_set_buffer seems not working well for a extremely small size.
Solution:
1) see above.
2) add a special case to deal with this.
3) don't use H5Pset_buffer.
Platforms tested:
RedHat Zoot 6.2
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Purpose:
change image test files to fulfill HDF5 image specification.
Description:
Solution:
Platforms tested:
eirene
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More code cleanups
Description:
Wrap up the code cleanups for changing the dataset transfer property lists
over to using the generic property list code.
Platforms tested:
IRIX64 6.5 (modi4)
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Code cleanups, mostly..
Description:
Work on pacifying the SGI compiler to get the generic properties working
correctly with --enable-parallel and --enable-fortran. It's not quite
fixed yet, but I need to head home and these patches help... :-/
Platforms tested:
IRIX64 6.5 (modi4)
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Purpose:
New Feature
Description:
Adding the h5cc script thingy.
Platforms tested:
Linux
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New Features!
Description:
Start migrating the internal use of property lists in the library from the
older implementation to the new generic property lists.
Currently, only the dataset transfer property lists are migrated to the
new architecture, all the rest of the property list types are still using
the older architecture.
Also, the backward compatibility features are not implemented yet, so
applications which use dataset transfer properties may need to make the
following changes:
H5Pcreate(H5P_DATASET_XFER) -> H5Pcreate_list(H5P_DATASET_XFER_NEW)
and
H5Pclose(<a dataset transfer property list>) -> H5Pclose_list(id)
This still may have some bugs in it, especially with Fortran, but I should
be wrapping up those later today.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Purpose:
Feature FIx
Description:
Fixed description of the --filedriver flag.
Platforms tested:
Linux
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Feature shift
Description:
Take out the v1.2.x compatibility stubs and put in the hooks for v1.4.x
compatibility when needed.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Bug Fix
Description:
The way we were generating Dependencies and .depend files was broken.
If the $srcdir or other macros began with a ".", then it would match
anything and cause problems since it would then overwrite the
beginning of the header file's path.
Solution:
Wrote a Perl script which can handle this type of weirdness better.
It's only used when the environment is a GNU one with a GCC
compiler...
Platforms tested:
Linux
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Purpose:
Feature Change
Description:
Changed the --family flag to --filedriver to make it clearer what's
going on.
Platforms tested:
Linux
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Purpose:
Bug Fix/Feature Add
Description:
Added new flag ("-f" and "--family") to allow user to specify which
file driver to use to open the file. If they don't specify anything,
then it defaults to the old behaviour of trying each driver in turn
until one actually opens the file.
If the driver the user specified doesn't succeed in opening the
file, then we do NOT try other file drivers.
Platforms tested:
Linux
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Purpose:
Reformatting
Description:
Reformatted the code so that it's much clearer and conforms to the
HDF5 coding standards. Changed the function headers to use the ANSI
style instead of the KnR style. Kept the use of typedef's such as
"unsigned char" being "BYTE" and so on since of of this code is
copied from some other place and that's the style they use...I didn't
want to break things.
Platforms tested:
It compiles fine on Linux, but there aren't any tests for this
package, so...
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Purpose:
Fixing a boo-boo
Description:
There was a problem with the generated Dependencies file. It listed
the H5pubconf.h header file as being in the $(top_srcdir) directory
when it's in the $(top_builddir) directory.
Solution:
Regenerated it.
Platforms tested:
Linux
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Purpose:
Updated
Description:
Regerated the Dependencies file.
Solution:
Ran "make Dependencies" on a GNU machine.
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Purpose:
Update
Description:
Updated the Dependencies file.
Solution:
Reran "make Dependencies" in the tools/h4toh5 directory.
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Purpose:
a bug in the comment
Description:
The structure of HDF4 file is not correct in the orginal comment
Solution:
Correct the wrong comment and add more explanation
Platforms tested:
eirene
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Bug Fix, Code Cleanup, Code Optimization, etc.
Description:
Fold in the hyperslab speedups, clean up compile warnings and change a
few things from using 'unsigned' or 'hsize_t' to use 'size_t' instead.
Platforms tested:
FreeBSD 4.3 (hawkwind), Solaris 2.7 (arabica), Irix64 6.5 (modi4)
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Documentation
Description:
Accommodate v1.2.x behavior when --enable-hdf5v1_2 is enabled.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Bug fix (by Bob McGrath)
Description:
On Solaris platforms palette was not written to the HDF5 file
Solution:
'\0' character was written outside the GroupName array. Apparently on Solaris it destroyed the condition value that determined if the palette should be written to the file.
Platforms tested:
Not tested yet.
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Purpose:
Checking in BOb's Changes
Description:
Just checking in Bob McGrath's changes to the h5dumper's XML code.
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Purpose:
Bug fix
Description:
One of the function calls (H5Sget_simple_extent_dims) used parameter with
the wrong type. That caused compilation errors on T3E.
Solution:
Used NULL since that argument is optional and was never used.
Platforms tested:
T3E(mcurie) and IRIX64 (modi4)
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code warrior support
and some clean up
the macros file_seek and file_offset_t that were repeated over sevral files were put only in
H5private.h
H5private .h was updated for win32
vthe
Description:
Solution:
Platforms tested:
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Clean up compiler warnings.
Description:
Just code neatening mostly, some casts, etc.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
New features for adding attribute options and modifying testing files
Description:
Solution:
Platforms tested:
eirene,arabica
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Purpose:
new features
Description:
1. add an option to convert HDF4 file without HDF4 specified attributes such as
HDF4_OBJECT_TYPE, HDF4_REF_NUM etc.
it can be done by inputting "h4toh5 -na input.hdf"
The default converter will still keep HDF4 specfied attributes.
2. Add compression features (gzip) for image too. Now the compressed HDF4 image
can be supported by using HDF5 gzip. Not sure whether tools can read it. Need to be tested.
3. Change SPACEPAD to NULLTERM for HDF4 dimensional name list. We can use variable length HDF5 string to represent these names, however currently H5dump and H5view cannot support variable length HDF5 string. converter will wait for other tools' update.
Solution:
Platforms tested:
eirene(Red Hat 6.2) and arabica(solaris 2.7)
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Purpose:
update h4toh5 converter utility test files
Description:
better output of HDF4 dimensional name list
Solution:
Platforms tested:
eirene,arabica
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Purpose:
update h4toh5 testing files
Description:
Now we are using fixed size for HDF5 dimensional name list and h5dump
output is appended with 000/000/.......................
It looks ugly and annoying.
Solution:
Use NULLTERM for SDS dimensional list names
Platforms tested:
RedHat 6.2(eirene) and solaris 2.7(arabica)
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Code cleanups
Description:
Fixed a small number of compiler warnings.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Code cleanups
Description:
Fixed a small number of warnings.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Fooling around
Description:
Added deleted gif.h file
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Purpose:
Bug fix
Description:
Rushabh added new directory tools/gifconv to CVS. He also modified
MANIFEST, but bin/chkmanifest complains this file.
Solution:
I will try to delete gif.h and then to add it once more.
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Purpose:
Adding new feature
Description:
Added gif2h5 and h52gif conversion utilities
Solution:
The utilites follow the framework built for the gif2hdf and hdf2gif
utilities for hdf4. The main files modified were those that read the
H5 file and those that write H5 file. In the future, if you wish to
continue with the framework and extend it to .png or some other fileformat
the main files to edit will be the gif reader and writer.
One point to note with h52gif. You have to specify the exact location of
the image and the palette that it links to. You can choose not to specify
a palette (uniform grayscale chosen in this case) but you must specify
image location. In the future, someone could edit the readhdf.c source
to enable the reader to parse the hdf file and select all images with
corresponding palettes.
Platforms tested:
modi4 , eirene , hawkwind , arabica , Ren (NT 4.0) , Personal box (win2k)
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Purpose:
Add definations of two new functions
Description:
Solution:
Platforms tested:
eirene
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Purpose:
Add a constant(compression level for gzip)
Description:
For compression issue
Solution:
Platforms tested:
eirene
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Purpose:
a bug fix
Description:
User can define "Real Vdata" as user-defined attribute. By using VSisattr, we can check this out. In order to keep this piece of information, We use "Vdata attribute" in the converted HDF5 file to distingush this kind of Vdata from independent Vdata.
Solution:
see above
Platforms tested:
eirene(Linux)
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Purpose:
a bug fix
Description:
When Vsisattr is true, this Vdata still needs to be converted as an independent
real "Vdata", We will add object type of this vdata as "Vdata attribute".
Solution:
erease the evaluation of Vsisattr call.
Platforms tested:
Linux(eirene)
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Purpose:
bug fix Adding more features
Description:
Bugs: 1) hdf4 dimensional scale data can be none, but the dim name can still defined by users, so number of hdf4 dimensional names and number of object reference may be different
Previously, this problem is not considered.
2) SDcheckempty will return true when fill value is set to HDF4 SDS, and then fill value information is lost
3) check whether SDS have fill value set although SDcheckempty return true.
Use H5Psetfillvalue and H5Dcreate in HDF5 part, still needs to wait for the new development of HDF5 and also need to investigate whether this part of code has bugs.
New features: compressed SDS will get compressed with gzip when it is converted. That will save some space.
[describe the bug, or describe the new feature, etc]
Solution:
See above and design document
Platforms tested:
eirene(linux)
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
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Adding Tests
Description:
Added tests for the h5dump subsetting feature.
Platforms tested:
Linux
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Oops
Description:
An "if" was capilalized for some reason.
Solution:
Changed it from If to if.
Platforms tested:
Linux
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small bug fix
Description:
If specifying --stride, it was checking for the wrong short-form of
the command-line parameters.
Solution:
Changed the 'T' to 'S' which is the new short form for the stride
option.
Platforms tested:
Linux
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Update
Description:
If the count for a subset isn't specified, then we default to the
remainder of the dataset.
Solution:
Check for the count to be specified. If not, then find the dimensions
of the dataset and subtract from the the "start" parameter.
Platforms tested:
Linux
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Update
Description:
Updated the way the subsetting data is retrieved. It now does it one
row of blocks at a time. It may still run out of memory, but this is
at least a good first step.
Also, the start parameter defaults to (0, 0, ...) if it isn't
specified.
Platforms tested:
Linux
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Update
Description:
Changed old style includes "with <>" to new style 'with ""' for
dependencies gathering.
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Update
Description:
Replaced
#include <hdf5_file.h>
with
#include "hdf5_file.h"
so that gcc can pick up our files more easily without picking up
system header files (which we don't care about being in the
dependencies list).
Platforms tested:
Linux
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Update
Description:
Replaced "#include <hdf5_file.h>" with the equivalent, but better
#include "hdf5_file.h" so that gcc can pick up our header files more
easily.
Platforms tested:
Linux
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Purpose:
a bug fix
Description:
when creating sds dimensional scale dataset, I accidently created two sds dimensional scale dataset with the same name, (say using name "dim1" for both rank 2 and rank 3).
hdf4 library doesn't give me complaints, hdp dumpsds doesn't generate complaints. h4toh5 converter since assumed that dimensional scale name has to be unique, simply skip if finding the same dimensional name, so accidently the result from hdp dumpsds are the same as the result from h5dump until I implement library API and find this bug.
Solution:
make unique sds dimensional scale name for this test file. Will also need to modify testfiles later.
suggestions: somebody check hdf4 library to disallow the same dimensional scale nameOused for the same sds object.
Platforms tested:
eirene, and this check in will not affect daily test.
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Update
Description:
Applied fix to h5dumper which was applied to the 1.4 branch. Done
just before creating subdirectories in the 1.4 branch.
Platforms tested:
Linux
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