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* [svn-r19073] Added check for no encoding to determine result for testAllen Byrne2010-07-151-2/+7
| | | | Tested: Windows
* [svn-r19058] Purpose: Jonathan Kim2010-07-081-0/+4
| | | | | | | | | | add reference file entries for the new test expected output files Description: This is related to r19053. Tested: Windows (cmake)
* [svn-r19053] Purpose:Jonathan Kim2010-07-0714-169/+355
| | | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Merged from hdf5 trunk r19051 Tested: jam, amani, heiwa
* [svn-r19036] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-299-0/+228
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r19035] Purpose:Jonathan Kim2010-06-281-0/+34
| | | | | | | | | | | Change h5ls not to manipulate special characters in object name or attribute name for smart display. Description: Merged from hdf5 trunk r19034. Related to "But1784 h5ls has input and output issues with links that have '\' characters in them." Tested: jam, amani
* [svn-r18986] Test feature: (bugs 1919)Albert Cheng2010-06-083-4/+28
| | | | | | | | | | | | | | | | | Problem: some launching command like yod (and sometimes mpirun), do not pass back the exit code of the executables back to the shell. It always returns 0 if it can launch the executable. This cause tests that expect non-zero exit code to fail incorrectly. Short term Solution: Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not test conditions that rely on non-zero exit code. Tests: dove-linux using RUNSERIAL=thgyod to see the failures and using $RUNSERIAL_NOEXITCODE=yes to bypass the errors. Also h5committested.
* [svn-r18961] Purpose:Jonathan Kim2010-06-031-12/+12
| | | | | | | | | | Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'. Description: This is related SVN r18946. There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
* [svn-r18946] Purpose:Jonathan Kim2010-06-0224-215/+825
| | | | | | | | | | | | | Support follow symbolic links. Description: Merged from hdf5 trunk r18943. Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam
* [svn-r18892] Improvment:Albert Cheng2010-05-258-34/+84
| | | | | | | Revised the online help page of h5dump to explain the packed bits feature and added an example too. Tested: h5committest plus jam tested with --disable-h5dump-packedbits.
* [svn-r18874] Purpose:Jonathan Kim2010-05-2115-142/+142
| | | | | | | | | | | | Rename '--follow-links' to '--follow-symlinks' Description: The '--follow-links' option is to follow symbolic links (soft and external). Make the name more intuitive and specific to the feature. Merged from hdf5 trunk r18873. Tested: jam
* [svn-r18855] Added CPack commands for installtion programAllen Byrne2010-05-1910-3/+23
| | | | Tested: local linux and Windows
* [svn-r18847] Removed obsolete packed bits testsAllen Byrne2010-05-181-2/+0
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* [svn-r18836] Added code to config files, libhdf5.settings.in and ↵Larry Knox2010-05-1711-0/+22
| | | | | | configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only). Tested: amani, jam, linew (h5committest) and with configure on these machines and tejeda.
* [svn-r18830] Updated CMake file with r18826Allen Byrne2010-05-171-0/+6
| | | | Tested: local linux
* [svn-r18826] Added packed bits tests on Compound and Array data types.Albert Cheng2010-05-173-0/+90
| | | | Tested: AlbertPax. Will do h5committest after check in.
* [svn-r18821] Packed bits codes tidy up. Removed codes that are not neededAlbert Cheng2010-05-155-30/+19
| | | | | | | | | any more. Changed algorithm of creating mask which now sits at the least significant bits. Display data by down shift first and then mask it for display. Changed the variable names to reflect the new purpose better. Tested: AlbertPax (linux)
* [svn-r18815] Move progname and d_status functions from h5tools to h5tools_utilAllen Byrne2010-05-144-34/+34
| | | | | Tested: linux and windows
* [svn-r18812] moved reference to noname-packedbits file to packed bits section Allen Byrne2010-05-141-1/+1
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* [svn-r18810] Bug fix:Albert Cheng2010-05-141-5/+5
| | | | | | | | Program failued in FreeBSD and Windows machines because uint is a local backward compatibility extension of Linux. Changed them to the proper "unsigned int". Tested: FreeBSD (liberty,duty), h5committested.
* [svn-r18809] Purpose:Mike McGreevy2010-05-143-3/+3
| | | | | | | | | | | | | | | | | | | Fixed file cleanup during make distclean / make check. Description: The h5jam Makefile and the h5importtestutil.sh script both included cleanup steps that removed "*.txt" from the directory. This resulted in the new CMake specific configuration file, CMakeLists.txt, getting blown away by make distclean (for h5jam) and make check (for h5import). I've removed the *.txt from the h5jam Makefile as the directory looks to be getting cleaned appropriately without it, and I've modified the h5import script h5importtestutil.sh to point to the specific .txt files to clean. Tested: jam
* [svn-r18798] Updated CMakeLists to match changes r18794-18796Allen Byrne2010-05-131-2/+69
| | | | | | Even figured out which are expected to fail! Tested: Local linux
* [svn-r18796] Enhancement 1853:Albert Cheng2010-05-135-92/+155
| | | | | | | | | | | | | | | | | | | | | | Install packed-bits feature for h5dump. tools/h5dump/h5dump.c: Added lots of error checking into parse_mask_list() to catch and flagged packed-bits argument errors. For now, the packed bits are limited to 1 byte (8 bits) range. tools/h5dump/testh5dump.sh.in Added 10 new packed-bits test to verify normal operation and argument error detection. tools/lib/h5tools.h: tools/lib/h5tools_str.c: tools/lib/h5tools.c: Only name changes of the packed-bit global variables to reflect the nature of the variable better, IMO. Tested: albertPax (linux) ------------------------------------------------------------------------
* [svn-r18795] Enhancement 1853:Albert Cheng2010-05-131-6/+169
| | | | | | | | | | Install packed-bits feature for h5dump. Added gent_packedbits() to generate the HDF5 test data file, packedbits.h5, for packed-bit feature test. Tested: albertPax (linux) ------------------------------------------------------------------------
* [svn-r18794] Enhancement 1853:Albert Cheng2010-05-1313-57/+752
| | | | | | | | | | | | | | | | | | | | | | | | | | Install packed-bits feature for h5dump. testfiles/packedbits.h5: New HDF5 test data file. Generated by h5dump/h5dumpgentest. testfiles/tpbitsLengthPositive.ddl: testfiles/tpbitsMaxExceeded.ddl: testfiles/tpbitsSigned.ddl: testfiles/tpbitsOffsetNegative.ddl: testfiles/tpbitsUnsigned.ddl: testfiles/tpbitsMax.ddl: testfiles/tpbitsIncomplete.ddl: testfiles/tpbitsOverlapped.ddl: testfiles/tpbitsLengthExceeded.ddl: testfiles/tpbitsOffsetExceeded.ddl: Expected output files created to test various components of the packed-bits feature. testfiles/tpackedbits2.ddl: testfiles/tpackedbits.ddl: Previous output files no longer used. Tested: albertPax (linux)
* [svn-r18787] Added h5tools.h include to h5diff_common.h to fix warnings ↵Allen Byrne2010-05-132-5/+20
| | | | | | about the new progname and status functions Tested: local linux
* [svn-r18786] Corrected typo which prevented non-windows diff tests to work ↵Allen Byrne2010-05-131-1/+1
| | | | | | correctly Tested: local linux
* [svn-r18784] Description:Quincey Koziol2010-05-131-1/+1
| | | | | | | Fix unterminated comment. Tested on: None - just eyeballed.
* [svn-r18779] Add ${DESTDIR} to scripts and Makefiles so that make ↵Larry Knox2010-05-1211-55/+55
| | | | | | DESTDIR=<install directory> install, installcheck and uninstall is supported for installing examples, since they are now installed as part of make install. This was necessary for rpmbuilds, but should also be supported otherwise. Tested: amani, jam, linew with committest, rpmbuild on jam and amani.
* [svn-r18777] Moved declaration to top of function, windows compiler issue.Allen Byrne2010-05-121-5/+5
| | | | Tested: Windows
* [svn-r18773] Add files to support building library with CMakeAllen Byrne2010-05-1213-0/+2642
| | | | Tested: Local linux
* [svn-r18758] Corrected missed progname to function instanceAllen Byrne2010-05-111-1/+1
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* [svn-r18757] Enable tools lib to be built as a dll on windows. Added two ↵Allen Byrne2010-05-1133-489/+577
| | | | | | | | | | get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated windows - H5pubconf.h for packed bits function Tested: Windows, linux
* [svn-r18743] enhancement 1853:Albert Cheng2010-05-079-4/+381
| | | | | | | | | | | | | | | | | | | | | | | | | Install packed-bits feature for h5dump. Allen has installed the feature in the NPOESS feature branch. I ported it back to the v1.8 branch for v1.8.5 release. tools/h5dump/testh5dump.sh.in: Added tests for the packed-bits feature. tools/h5dump/h5dump.c tools/h5dump/h5dump.h Added code to parse and handled the packed-bits request. tools/lib/h5tools.h tools/lib/h5tools_str.c tools/lib/h5tools.c Added code to print packed-bits. tools/testfiles/tpackedbits2.ddl tools/testfiles/tnofilename-with-packed-bits.ddl tools/testfiles/tpackedbits.ddl Expected output files for packed-bits feature. Tested: h5committested the NPOESS branch. Tested in the linux VM machine in my Dove.
* [svn-r18710] Purpose:Mike McGreevy2010-05-0511-11/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag is being deprecated in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. --disable-linux-lfs can still be used to disable largefile support (on linux) when the --enable-largefile flag is not specified. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18701] ID 1853:Albert Cheng2010-05-0411-0/+11
| | | | | | | | Added the configure option --enable-h5dump-packed-bits for the h5dump optional feature. Tested: Jam (default and --disable-h5dump-packed-bits).
* [svn-r18652] Description:Quincey Koziol2010-04-278-13/+18
| | | | | | | | | | | | Bring r18650 from trunk to 1.8 branch: Bring back various minor tweaks & cleanups from the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committested on trunk)
* [svn-r18646] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-271-0/+1
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on amani, linew, and jam.
* [svn-r18643] Purpose:Jonathan Kim2010-04-272-2/+7
| | | | | | | | | | | Fix for Bug 1793 - h5ls on a non-existent file gives 0 return code Description: Merged from hdf5 trunk r18642. After the fix, h5ls returns 1 (EXIT_FAILURE) if non-existent file is given. Tested: jam
* [svn-r18615] Purpose:Jonathan Kim2010-04-226-160/+205
| | | | | | | | | | | Fix for bug 1817 : h5copy fail to copy dangling link by specifying link path directly Description: Merged from hdf5 trunk r18614. Tested: jam, amani
* [svn-r18580] Purpose:Mike McGreevy2010-04-1511-13/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Autotool Upgrade / Libtool Bug Fix Description: Updated autotools referenced in bin/reconfigure as follows: Autoconf 2.64 --> Autoconf 2.65 Automake 1.11 --> Automake 1.11.1 Libtool 2.2.6a --> Libtool 2.2.6b-mcg The referenced libtool version is a custom version of 2.2.6b. It has been tweaked to fix a bug in libtool that occurs when using PGI 10.0 compilers. A check incorrectly categorizes the C++ compiler as version 1.0 instead of 10.0, and the link line is subsequently set up incorrectly and fails to compile. A patch has been made available and will be included in the next release of libtool, but in the meantime I've applied the patch to a custom installation as indicated above. This bin/reconfigure now references the custom installation, and the resulting configure script will correctly categorize the PGI 10.0 C++ compiler. Ran bin/reconfigure to regenerate configure and makefiles. Tested: jam and amani with PGI 10.0 compilers. h5committest
* [svn-r18550] Description:Quincey Koziol2010-04-131-1/+1
| | | | | | | | | | Bring r18548 from trunk to 1.8 branch: Minor cleanups to compile with PGI C compiler 10.x. Tested on: Mac OS X/32 10.6.3 (amazon) (tested on trunk)
* [svn-r18455] Purpose:Jonathan Kim2010-03-257-403/+701
| | | | | | | | | | | Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE. Description: Merged from hdf5 trunk rXXX Tested: jam
* [svn-r18450] Purpose:Jonathan Kim2010-03-251-3/+3
| | | | | | | | Resolve build issue on Sloaris due to white space from the previous checkin r18448 Tested: jam
* [svn-r18448] Purpose:Jonathan Kim2010-03-241-5/+15
| | | | | | | | | | | | | Bug1727 - NPOESS: h5copy should copy region references Description: Merged from hdf5 trunk r18447. Tested and added test cases from previous checkin r18321 Reference Manual and tool's usage section for '-f ref' option is updated for more comprehensibility. Tested: jam
* [svn-r18443] Purpose:Jonathan Kim2010-03-231-1/+2
| | | | | | | | | | | Resolve windows build issue from previous checkin r18427 Description: The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Tested: jam
* [svn-r18427] Purpose:Jonathan Kim2010-03-185-5/+341
| | | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: Merged from hdf5 trunk r18425 handles object reference to named-datatype as well. Add test cases. Tested: jam
* [svn-r18400] Purpose:Jonathan Kim2010-03-095-1/+281
| | | | | | | | | | | add test cases for h5copy - copy external links with/without ‘–f ext’ option (relate to bug 1733) Description: merged from hdf5 trunk (r18398 and r18399) Tested: jam
* [svn-r18332] Description:Jonathan Kim2010-02-241-16/+5
| | | | | | | | Update to use H5Gcreate2 instead of H5Gcreate. Remove mis-used type related code. Tested: jam, amani and linew
* [svn-r18330] Description:Jonathan Kim2010-02-241-1/+1
| | | | | | | | Fix to handle $srcdir for nightly test as well as local testing Merged from hdf5 18329. Tested: jam, amani and linew
* [svn-r18321] Purpose:Jonathan Kim2010-02-235-21/+407
| | | | | | | | | | | | | | Bug1727 - h5copy: add test cases for object and region references Note: merged from hdf5 trunk 18319 and 18320 File added: tools/h5copy/testfiles/h5copy_ref.out.ls tools/h5copy/testfiles/h5copy_ref.h5 Tested: jam