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* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-1110-0/+35
| | | | Tested jam, local linux
* [svn-r22443] Add new test to CMake fileAllen Byrne2012-06-071-0/+6
| | | | Tested: local linux
* [svn-r22440] This is part of the previous checkin--#22438.Vailin Choi2012-06-061-0/+5
| | | | A new ddl to be added.
* [svn-r22438] (1) fix for making MEM_GHEAP as MEM_DRAWVailin Choi2012-06-064-120/+98
| | | | | | | | | | | | | | | | | | | | | (2) fix to extend into the aggregator based on threshold (3) fix for the "flavor" logging problem (4) fix for test failures due to the above fixes (5) bug fix for h5stat when h5stat against a non-existing file --Ths line, and th se below, will be ignored-- M test/mf.c M src/H5MFaggr.c M src/H5FDpublic.h M src/H5MF.c M src/H5FDmulti.c M src/H5FDlog.c M src/H5Faccum.c M tools/h5copy/testfiles/h5copytst.out.ls M tools/h5copy/testfiles/h5copy_ref.out.ls M tools/h5stat/testh5stat.sh.in M tools/h5stat/h5stat.c
* [svn-r22420] Purpose:Jonathan Kim2012-05-301-271/+248
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5diff tool. Description: Update cmake script to fetch test files from any tools to a test directory and run test in organized manner. Also keep the apperance similiar to shell script for better maintainance. Tested: CMake (Windows and jam)
* [svn-r22412] reduce compiler warnings by removing unreferenced variables and ↵Allen Byrne2012-05-256-30/+22
| | | | | | adding cast Tested: local linux
* [svn-r22397] Merge trunk changes for HDFFV-7999 and h5dump test script to branchAllen Byrne2012-05-2311-256/+828
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* [svn-r22374] Purpose: Jonathan Kim2012-05-161-5/+10
| | | | | | | | | | | | | Fix h5repacktst (test file generating binary) to address HDFFV-8016 h5repacktst failed in AIX 32bit mode Description: Segmentation fault occurred when h5repacktst try to generate a dataset when system memory is limited to 256MB. Add error handling to display apporiate message to exit and adjust the test dataset according to the original size which didn't causing out of memory. Tested: test was done by limit memory in csh. jam (linux32-LE), ostrich (linuxppc64-BE)
* [svn-r22322] Description:Jonathan Kim2012-04-271-2/+3
| | | | | | | | | | The ph5diff (parallel h5diff) can intermittently hang in parallel mode when comparing the two HDF5 files that contains common name objects with different object types. (HDFFV-8003) Skip only the specific test for parallel until the fix has made. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22320] Purpose:Jonathan Kim2012-04-2713-6/+120
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22301] Purpose:Jonathan Kim2012-04-191-0/+3
| | | | | | | | | | | | Fix for HDFFV-8001 - h5unjam: segfault when used -V (show version) option Description: h5unjam has an option '-V' to display version information. "h5unjam -V" caused segfulat for 1.8.9 pre-release. Merged from HDF5 trunk 22300 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22291] Description:Quincey Koziol2012-04-173-30/+29
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22281] Purpose:Jonathan Kim2012-04-119-23/+232
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-041-7/+63
| | | | Tested: local linux
* [svn-r22225] Description:Quincey Koziol2012-04-012-8/+33
| | | | | | | | | | | | Bring r22220, r22221 & r22224 from trunk to 1.8 branch: improved h5repack metadata block size testing, and some code cleanups. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22216] Description:Quincey Koziol2012-03-316-86/+124
| | | | | | | | | | | | | Bring r22180, r22181 and r22214 from trunk to 1.8 branch: Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. [With release managers blessing] Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22208] Purpose:Mike McGreevy2012-03-301-1/+1
| | | | | | Merge fix for HDFFV-398 (r22146 and r22147) from trunk to hdf5_1_8. Tested: h5committest
* [svn-r22188] Purpose:Jonathan Kim2012-03-2918-291/+307
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22177] Description:Quincey Koziol2012-03-288-109/+178
| | | | | | | | Merge "summary" option ('-S') from trunk to 1.8 branch. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest forthcoming)
* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-2633-0/+0
| | | | in, and HDF5 files.
* [svn-r22137] Purpose:Jonathan Kim2012-03-231-0/+3
| | | | | | | | | | | update for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: Add the new test output list to test shell script. This is based on the previous commit r22124. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22124] Purpose:Jonathan Kim2012-03-229-8/+174
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22121] Purpose:Jonathan Kim2012-03-2210-1/+64
| | | | | | | | | | | | | | update for HDFFV-7523 JPSS: h5dump fails to open an attribute when using the -a option to specify an attribute with a slash in the name Description: Added capability for "-a" option to show attributes containing "/" by using an escape character. For example, for a dataset "/dset" containing attribute "speed(m/h)", use "h5dump -a "/dset/speed(\/h)" to show the content of the attribute. Merged from HDF5 trunk r22052, r22063, r22108 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22113] Description:Quincey Koziol2012-03-211-16/+16
| | | | | | | | | | Bring r22112 from trunk to 1.8 branch: Minor code safety issue in test/fheap.c and whitespace in other files. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22099] Add reference file extensions in new tests.Allen Byrne2012-03-202-24/+21
| | | | | Remove "STAR" test as some platforms vary in interpretation. Add new tets to windows legacy test script
* [svn-r22095] Correct test script errorsAllen Byrne2012-03-191-4/+3
| | | | Add new tests to legacy dos script
* [svn-r22088] HDFFV-7957(7958): Correct use of ERROR_STACK for h5dump and tools.Allen Byrne2012-03-1920-155/+446
| | | | Tested: local linux after week in trunk
* [svn-r22060] Description:Quincey Koziol2012-03-131-1/+1
| | | | | | | | Change to use versioned API call, to avoid problems when defaulting to older AI versions. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22057] Purpose:Jonathan Kim2012-03-128-23/+83
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22038. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22050] Allen Byrne2012-03-121-0/+1
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* [svn-r22045] HDFFV-7957-7958:Allen Byrne2012-03-125-34/+84
| | | | | Add tools error stack and check return from H5Dreference call. Tested: trunk
* [svn-r22044] HDFFV-7957-7958:Allen Byrne2012-03-121-0/+4
| | | | | Add tools error stack and check return from H5Dreference call. Add missing file update
* [svn-r22043] HDFFV-7839: Dangling link should not display errorAllen Byrne2012-03-1218-71/+214
| | | | | | | If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command. Updated test file results with error stack when link not found. Tested: trunk
* [svn-r22037] Purpose:Jonathan Kim2012-03-091-98/+91
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5ls tool. Description: Update cmake script to fetch test files from any tools to a test directory and run test in organized manner. Also keep the apperance similiar to shell script for better maintainance. Tested: CMake (Windows and jam)
* [svn-r22031] Purpose:Jonathan Kim2012-03-063-265/+477
| | | | | | | | | | | | | | | | Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack Description: h5repack sometimes became very slow when handling big chunked datasets in certain cases. (when chunk boundary doesn't match with a hyperslab boundary.) The main issue was from figuring out a hypeslab without considering chunk boundary to read from and write to such datasets. The update was made to figure out a better hyperslab unit with considering chunk boundary to improve performance for such cases prior to the update. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
* [svn-r22025] Cleanup compiler warnings.Allen Byrne2012-03-056-1242/+282
| | | | | | Add HD prefix to tools library based tests. Cleaned allocation/free in tests. Tested: local linux/ h5committetest
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-02174-13698/+25618
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r21935] Description:Quincey Koziol2012-02-131-27/+27
| | | | | | | | | | | | | | Bring r21932 & r21934 from trunk to 1.8 branch: r21932: Correct misnamed FUNC_ENTER macro. r21934: Remove some leftover uses of the __FUNCTION__ macro, replacing them with FUNC macro, as used everywhere else. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & production
* [svn-r21901] Purpose:Jonathan Kim2012-01-301-63/+74
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5repack cmake test. Description: Update cmake script to clean up correctly. Revisit h5repack cmake test script updated from r21870. Also sync with HDF5 trunk. (Jira 2605) Tested: cmake test for Windows (32-LE) and jam (linux32-LE)
* [svn-r21892] Purpose:Jonathan Kim2012-01-254-11/+26
| | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21875] Purpose:Jonathan Kim2012-01-125-56/+44
| | | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5copy tool. Description: Update cmake script to fetch test files from anywhere. Also keep the apperance similiar to shell script for better maintainance. some updated shell script. Merged from HDF5 trunk r21874 Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21873] Update a comment to make clear from the previous commit ↵Jonathan Kim2012-01-111-2/+3
| | | | (r21870) for HDFFV-7840.
* [svn-r21870] Purpose:Jonathan Kim2012-01-104-57/+87
| | | | | | | | | | | | | | | Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Merged from HDF5 trunk r21869. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21866] Purpose:Jonathan Kim2012-01-065-4/+86
| | | | | | | | | | | | | | Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option Description: Segfault occurred when h5ls access region reference data in an attribute. This didn't occurred when -v option was used. The cause was "h5tool_format_t info;" struct variable members were accessed without proper values were assigned (was NULL), so printf failed later in the code. Merged from HDF5 trunk r21865. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), , cmake-Windows (32-LE)
* [svn-r21817] Description:Jonathan Kim2011-12-061-0/+4
| | | | | | | Add test case to unix test-script for "HDFFV-2567 - added test for be generated files with at least 9 attributes at root". It's committed previously as r21812 along with Cmake test. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r21812] HDFFV-2567 - added test for be generated files with at least 9 ↵Allen Byrne2011-12-053-0/+125
| | | | | | attributes at root Tested: local linux
* [svn-r21805] Update CMake Required version in all folders to match current ↵Allen Byrne2011-12-0511-11/+11
| | | | standard 2.8.6
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-0410-0/+28
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
* [svn-r21660] Purpose:Jonathan Kim2011-10-249-32/+78
| | | | | | | | | | | | HDFFV-7770 - h5diff segmentation fault on JPSS files Description: Fixed segfault over non-comparable attribute with different dimention or rank, along with '-c' option to display details. Merged from HDF5 trunk r21658. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows, Cmake
* [svn-r21646] Port r21603 to 1.8 branchNeil Fortner2011-10-211-1/+1
| | | | | | | | | | | | | | | Purpose: Add generic skip list implementation Description: Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a client-supplied callback for key comparison. This was added to support the upcoming "merge named datatype" feature for H5Ocopy, but may be used in other places as well. Also added testing. Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added testing for that. Tested: jam, koala, heiwa (h5committest), durandal
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