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* [svn-r4355] Purpose:Quincey Koziol2001-08-145-22/+22
| | | | | | | | | | | | | | | | | | | | | | Code cleanup (sorta) Description: When the first versions of the HDF5 library were designed, I remembered vividly the difficulties of porting code from a 32-bit platform to a 16-bit platform and asked that people use intn & uintn instead of int & unsigned int, respectively. However, in hindsight, this was overkill and unnecessary since we weren't going to be porting the HDF5 library to 16-bit architectures. Currently, the extra uintn & intn typedefs are causing problems for users who'd like to include both the HDF5 and HDF4 header files in one source module (like Kent's h4toh5 library). Solution: Changed the uintn & intn's to unsigned and int's respectively. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4345] Purpose:Albert Cheng2001-08-144-8/+8
| | | | | | | | | | | | | | | | | | | | | Improvement Description: The stdout and stderr were both redirected to an output file. This works fine in tradition sequential Unix machines. But in some parallel systems (like mpi-jobs in IBM SP), the stderr is merged with stdout alright but not in the exact order as expected. This is not deterministic in parallel jobs. So, the test output are all there but the ordering maynot be as expected. Solution: Redirect stderr to separated file and append it to the stdout file after test-command is executed. Then compare it with the expected output. This eliminate the assumption that stdout and stderr must merged in "chronical orders". The .ddl file are updated by moving all stderr text to the end of the file. Platforms tested: eirene.
* [svn-r4342] Purpose:Albert Cheng2001-08-141-3/+4
| | | | | | | | | | | | | | | | | | Improvement Description: The stdout and stderr were both redirected to an output file. This works fine in tradition sequential Unix machines. But in some parallel systems (like mpi-jobs in IBM SP), the stderr is merged with stdout alright but not in the exact order as expected. This is not deterministic in parallel jobs. So, the test output are all there but the ordering maynot be as expected. Solution: Redirect stderr to separated file and append it to the stdout file after test-command is executed. Then compare it with the expected output. This eliminate the assumption that stdout and stderr must merged in "chronical orders". Platforms tested: tested in v1.4. Folded it into v1.5.
* [svn-r4338] MuQun Yang2001-08-132-195/+11
| | | | | | | | | | Purpose: check-in the second time to update the handling of data transfer in h4toh5. This will make up for the cvs conflict checking a couple hours ago. Description: Solution: Platforms tested: eirene
* [svn-r4334] MuQun Yang2001-08-135-92/+693
| | | | | | | | | | | | | | | | | | Purpose: 1) fix the implementation of image according to image specfication 2) fix two bugs of SDS implemention. the first one is to handle the unlimited SDS with the first dimensional size set to 0. the second one is to change the way how HDF5 dataset is written. Description: 1) mapping 24-bit image to 3D arrays instead of 2D compound datatype. 2) previously forgot considering unlimited SDS with the size set to 0. 3) H5P_set_buffer seems not working well for a extremely small size. Solution: 1) see above. 2) add a special case to deal with this. 3) don't use H5Pset_buffer. Platforms tested: RedHat Zoot 6.2
* [svn-r4333] MuQun Yang2001-08-135-0/+0
| | | | | | | | | Purpose: change image test files to fulfill HDF5 image specification. Description: Solution: Platforms tested: eirene
* [svn-r4327] Purpose:Quincey Koziol2001-08-111-1/+1
| | | | | | | | | More code cleanups Description: Wrap up the code cleanups for changing the dataset transfer property lists over to using the generic property list code. Platforms tested: IRIX64 6.5 (modi4)
* [svn-r4326] Purpose:Quincey Koziol2001-08-107-66/+184
| | | | | | | | | | Code cleanups, mostly.. Description: Work on pacifying the SGI compiler to get the generic properties working correctly with --enable-parallel and --enable-fortran. It's not quite fixed yet, but I need to head home and these patches help... :-/ Platforms tested: IRIX64 6.5 (modi4)
* [svn-r4325] Bill Wendling2001-08-103-3/+253
| | | | | | | | | Purpose: New Feature Description: Adding the h5cc script thingy. Platforms tested: Linux
* [svn-r4324] Purpose:Quincey Koziol2001-08-103-32/+45
| | | | | | | | | | | | | | | | | | | | | | | | New Features! Description: Start migrating the internal use of property lists in the library from the older implementation to the new generic property lists. Currently, only the dataset transfer property lists are migrated to the new architecture, all the rest of the property list types are still using the older architecture. Also, the backward compatibility features are not implemented yet, so applications which use dataset transfer properties may need to make the following changes: H5Pcreate(H5P_DATASET_XFER) -> H5Pcreate_list(H5P_DATASET_XFER_NEW) and H5Pclose(<a dataset transfer property list>) -> H5Pclose_list(id) This still may have some bugs in it, especially with Fortran, but I should be wrapping up those later today. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4315] Bill Wendling2001-08-061-3/+5
| | | | | | | | | Purpose: Feature FIx Description: Fixed description of the --filedriver flag. Platforms tested: Linux
* [svn-r4312] Purpose:Quincey Koziol2001-08-064-155/+0
| | | | | | | | | Feature shift Description: Take out the v1.2.x compatibility stubs and put in the hooks for v1.4.x compatibility when needed. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r4292] Bill Wendling2001-08-015-0/+652
| | | | | | | | | | | | | | | | Purpose: Bug Fix Description: The way we were generating Dependencies and .depend files was broken. If the $srcdir or other macros began with a ".", then it would match anything and cause problems since it would then overwrite the beginning of the header file's path. Solution: Wrote a Perl script which can handle this type of weirdness better. It's only used when the environment is a GNU one with a GCC compiler... Platforms tested: Linux
* [svn-r4284] Bill Wendling2001-07-311-21/+25
| | | | | | | | | | Purpose: Feature Change Description: Changed the --family flag to --filedriver to make it clearer what's going on. Platforms tested: Linux
* [svn-r4282] Bill Wendling2001-07-304-46/+152
| | | | | | | | | | | | | | | Purpose: Bug Fix/Feature Add Description: Added new flag ("-f" and "--family") to allow user to specify which file driver to use to open the file. If they don't specify anything, then it defaults to the old behaviour of trying each driver in turn until one actually opens the file. If the driver the user specified doesn't succeed in opening the file, then we do NOT try other file drivers. Platforms tested: Linux
* [svn-r4254] Bill Wendling2001-07-249-1917/+1951
| | | | | | | | | | | | | | | Purpose: Reformatting Description: Reformatted the code so that it's much clearer and conforms to the HDF5 coding standards. Changed the function headers to use the ANSI style instead of the KnR style. Kept the use of typedef's such as "unsigned char" being "BYTE" and so on since of of this code is copied from some other place and that's the style they use...I didn't want to break things. Platforms tested: It compiles fine on Linux, but there aren't any tests for this package, so...
* [svn-r4245] Bill Wendling2001-07-201-8/+8
| | | | | | | | | | | | | Purpose: Fixing a boo-boo Description: There was a problem with the generated Dependencies file. It listed the H5pubconf.h header file as being in the $(top_srcdir) directory when it's in the $(top_builddir) directory. Solution: Regenerated it. Platforms tested: Linux
* [svn-r4239] Bill Wendling2001-07-191-0/+41
| | | | | | | | | Purpose: Updated Description: Regerated the Dependencies file. Solution: Ran "make Dependencies" on a GNU machine.
* [svn-r4238] Bill Wendling2001-07-191-0/+300
| | | | | | | | | Purpose: Update Description: Updated the Dependencies file. Solution: Reran "make Dependencies" in the tools/h4toh5 directory.
* [svn-r4185] MuQun Yang2001-07-111-5/+18
| | | | | | | | | | | Purpose: a bug in the comment Description: The structure of HDF4 file is not correct in the orginal comment Solution: Correct the wrong comment and add more explanation Platforms tested: eirene
* [svn-r4181] Purpose:Quincey Koziol2001-07-102-1/+2
| | | | | | | | | Bug Fix, Code Cleanup, Code Optimization, etc. Description: Fold in the hyperslab speedups, clean up compile warnings and change a few things from using 'unsigned' or 'hsize_t' to use 'size_t' instead. Platforms tested: FreeBSD 4.3 (hawkwind), Solaris 2.7 (arabica), Irix64 6.5 (modi4)
* [svn-r4180] Purpose:Quincey Koziol2001-07-104-126/+286
| | | | | | | | Documentation Description: Accommodate v1.2.x behavior when --enable-hdf5v1_2 is enabled. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r4171] Elena Pourmal2001-07-101-1/+1
| | | | | | | | | | | Purpose: Bug fix (by Bob McGrath) Description: On Solaris platforms palette was not written to the HDF5 file Solution: '\0' character was written outside the GroupName array. Apparently on Solaris it destroyed the condition value that determined if the palette should be written to the file. Platforms tested: Not tested yet.
* [svn-r4150] Bill Wendling2001-07-096-10/+50
| | | | | | | Purpose: Checking in BOb's Changes Description: Just checking in Bob McGrath's changes to the h5dumper's XML code.
* [svn-r4107] Elena Pourmal2001-07-041-2/+1
| | | | | | | | | | | | Purpose: Bug fix Description: One of the function calls (H5Sget_simple_extent_dims) used parameter with the wrong type. That caused compilation errors on T3E. Solution: Used NULL since that argument is optional and was never used. Platforms tested: T3E(mcurie) and IRIX64 (modi4)
* [svn-r4083] Pedro Vicente Nunes2001-06-291-8/+8
| | | | | | | | | | | | | | code warrior support and some clean up the macros file_seek and file_offset_t that were repeated over sevral files were put only in H5private.h H5private .h was updated for win32 vthe Description: Solution: Platforms tested:
* [svn-r4012] Purpose:Quincey Koziol2001-06-1817-359/+320
| | | | | | | | Clean up compiler warnings. Description: Just code neatening mostly, some casts, etc. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3989] MuQun Yang2001-06-112-6/+66
| | | | | | | | | Purpose: New features for adding attribute options and modifying testing files Description: Solution: Platforms tested: eirene,arabica
* [svn-r3988] MuQun Yang2001-06-119-175/+479
| | | | | | | | | | | | | | | | | Purpose: new features Description: 1. add an option to convert HDF4 file without HDF4 specified attributes such as HDF4_OBJECT_TYPE, HDF4_REF_NUM etc. it can be done by inputting "h4toh5 -na input.hdf" The default converter will still keep HDF4 specfied attributes. 2. Add compression features (gzip) for image too. Now the compressed HDF4 image can be supported by using HDF5 gzip. Not sure whether tools can read it. Need to be tested. 3. Change SPACEPAD to NULLTERM for HDF4 dimensional name list. We can use variable length HDF5 string to represent these names, however currently H5dump and H5view cannot support variable length HDF5 string. converter will wait for other tools' update. Solution: Platforms tested: eirene(Red Hat 6.2) and arabica(solaris 2.7)
* [svn-r3987] MuQun Yang2001-06-112-0/+0
| | | | | | | | | | Purpose: update h4toh5 converter utility test files Description: better output of HDF4 dimensional name list Solution: Platforms tested: eirene,arabica
* [svn-r3986] MuQun Yang2001-06-113-0/+0
| | | | | | | | | | | | | Purpose: update h4toh5 testing files Description: Now we are using fixed size for HDF5 dimensional name list and h5dump output is appended with 000/000/....................... It looks ugly and annoying. Solution: Use NULLTERM for SDS dimensional list names Platforms tested: RedHat 6.2(eirene) and solaris 2.7(arabica)
* [svn-r3985] Purpose:Quincey Koziol2001-06-111-1/+1
| | | | | | | | Code cleanups Description: Fixed a small number of compiler warnings. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3984] Purpose:Quincey Koziol2001-06-112-25/+25
| | | | | | | | Code cleanups Description: Fixed a small number of warnings. Platforms tested: FreeBSD 4.3 (hawkwind)
* [svn-r3921] Elena Pourmal2001-05-121-0/+179
| | | | | | | Purpose: Fooling around Description: Added deleted gif.h file
* [svn-r3920] Elena Pourmal2001-05-121-179/+0
| | | | | | | | | | Purpose: Bug fix Description: Rushabh added new directory tools/gifconv to CVS. He also modified MANIFEST, but bin/chkmanifest complains this file. Solution: I will try to delete gif.h and then to add it once more.
* [svn-r3919] Rushabh Doshi2001-05-1212-1/+2841
| | | | | | | | | | | | | | | | | | | | | Purpose: Adding new feature Description: Added gif2h5 and h52gif conversion utilities Solution: The utilites follow the framework built for the gif2hdf and hdf2gif utilities for hdf4. The main files modified were those that read the H5 file and those that write H5 file. In the future, if you wish to continue with the framework and extend it to .png or some other fileformat the main files to edit will be the gif reader and writer. One point to note with h52gif. You have to specify the exact location of the image and the palette that it links to. You can choose not to specify a palette (uniform grayscale chosen in this case) but you must specify image location. In the future, someone could edit the readhdf.c source to enable the reader to parse the hdf file and select all images with corresponding palettes. Platforms tested: modi4 , eirene , hawkwind , arabica , Ren (NT 4.0) , Personal box (win2k)
* [svn-r3871] MuQun Yang2001-04-281-2/+4
| | | | | | | | | | | | | Purpose: Add definations of two new functions Description: Solution: Platforms tested: eirene [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r3870] MuQun Yang2001-04-281-1/+8
| | | | | | | | | | | | | | Purpose: Add a constant(compression level for gzip) Description: For compression issue Solution: Platforms tested: eirene [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r3869] MuQun Yang2001-04-281-3/+12
| | | | | | | | | | | Purpose: a bug fix Description: User can define "Real Vdata" as user-defined attribute. By using VSisattr, we can check this out. In order to keep this piece of information, We use "Vdata attribute" in the converted HDF5 file to distingush this kind of Vdata from independent Vdata. Solution: see above Platforms tested: eirene(Linux)
* [svn-r3868] MuQun Yang2001-04-281-1/+1
| | | | | | | | | | | | Purpose: a bug fix Description: When Vsisattr is true, this Vdata still needs to be converted as an independent real "Vdata", We will add object type of this vdata as "Vdata attribute". Solution: erease the evaluation of Vsisattr call. Platforms tested: Linux(eirene)
* [svn-r3867] MuQun Yang2001-04-281-310/+830
| | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Adding more features Description: Bugs: 1) hdf4 dimensional scale data can be none, but the dim name can still defined by users, so number of hdf4 dimensional names and number of object reference may be different Previously, this problem is not considered. 2) SDcheckempty will return true when fill value is set to HDF4 SDS, and then fill value information is lost 3) check whether SDS have fill value set although SDcheckempty return true. Use H5Psetfillvalue and H5Dcreate in HDF5 part, still needs to wait for the new development of HDF5 and also need to investigate whether this part of code has bugs. New features: compressed SDS will get compressed with gzip when it is converted. That will save some space. [describe the bug, or describe the new feature, etc] Solution: See above and design document Platforms tested: eirene(linux) [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r3853] Purpose:Bill Wendling2001-04-245-0/+106
| | | | | | | | Adding Tests Description: Added tests for the h5dump subsetting feature. Platforms tested: Linux
* [svn-r3841] Purpose:Bill Wendling2001-04-241-1/+1
| | | | | | | | | | Oops Description: An "if" was capilalized for some reason. Solution: Changed it from If to if. Platforms tested: Linux
* [svn-r3840] Purpose:Bill Wendling2001-04-241-2/+2
| | | | | | | | | | | | small bug fix Description: If specifying --stride, it was checking for the wrong short-form of the command-line parameters. Solution: Changed the 'T' to 'S' which is the new short form for the stride option. Platforms tested: Linux
* [svn-r3811] Purpose:Bill Wendling2001-04-131-11/+23
| | | | | | | | | | | | Update Description: If the count for a subset isn't specified, then we default to the remainder of the dataset. Solution: Check for the count to be specified. If not, then find the dimensions of the dataset and subtract from the the "start" parameter. Platforms tested: Linux
* [svn-r3795] Purpose:Bill Wendling2001-04-102-186/+248
| | | | | | | | | | | | | Update Description: Updated the way the subsetting data is retrieved. It now does it one row of blocks at a time. It may still run out of memory, but this is at least a good first step. Also, the start parameter defaults to (0, 0, ...) if it isn't specified. Platforms tested: Linux
* [svn-r3782] Purpose:Bill Wendling2001-04-051-1/+2
| | | | | | | Update Description: Changed old style includes "with <>" to new style 'with ""' for dependencies gathering.
* [svn-r3769] Purpose:Bill Wendling2001-04-034-15/+16
| | | | | | | | | | | | | | | | | | Update Description: Replaced #include <hdf5_file.h> with #include "hdf5_file.h" so that gcc can pick up our files more easily without picking up system header files (which we don't care about being in the dependencies list). Platforms tested: Linux
* [svn-r3768] Purpose:Bill Wendling2001-04-031-2/+2
| | | | | | | | | | Update Description: Replaced "#include <hdf5_file.h>" with the equivalent, but better #include "hdf5_file.h" so that gcc can pick up our header files more easily. Platforms tested: Linux
* [svn-r3739] MuQun Yang2001-03-291-17/+38
| | | | | | | | | | | | | Purpose: a bug fix Description: when creating sds dimensional scale dataset, I accidently created two sds dimensional scale dataset with the same name, (say using name "dim1" for both rank 2 and rank 3). hdf4 library doesn't give me complaints, hdp dumpsds doesn't generate complaints. h4toh5 converter since assumed that dimensional scale name has to be unique, simply skip if finding the same dimensional name, so accidently the result from hdp dumpsds are the same as the result from h5dump until I implement library API and find this bug. Solution: make unique sds dimensional scale name for this test file. Will also need to modify testfiles later. suggestions: somebody check hdf4 library to disallow the same dimensional scale nameOused for the same sds object. Platforms tested: eirene, and this check in will not affect daily test.
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