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* [svn-r10680] Purpose:MuQun Yang2005-04-271-1/+1
| | | | | | | | | | | | | | H5Pset_scaleoffset API is changed due to addition of the floating-point filter Description: Only add a parameter, nothing should change for the tool. Solution: Platforms tested: Linux 2.4 Misc. update:
* [svn-r10679] Purpose:MuQun Yang2005-04-271-1/+1
| | | | | | | | | | | | | | H5Pset_scaleoffset API is changed due to addition of the floating-point filter. Description: Only add a parameter, nothing should change for the tool. Solution: Platforms tested: Linux 2.4 Misc. update:
* [svn-r10678] Purpose:MuQun Yang2005-04-271-1/+1
| | | | | | | | | | | | | | | Update usage of H5Pset_scaleoffset. Description: H5Pset_scaleoffset API is changed due to addition of the floating-point filter. Solution: Only add a parameter, nothing should change for the tool. Platforms tested: Linux 2.4 Misc. update:
* [svn-r10659] Purpose:Leon Arber2005-04-252-3/+2
| | | | | | | | | | | | | | Optimization Description: removed an unncessary memset call. Solution: Platforms tested: heping (pp), sol (pp) Misc. update:
* [svn-r10648] Purpose:Quincey Koziol2005-04-221-1/+0
| | | | | | | | | | | | Bug fix Description: Remove declaration of 'prefix' variable that was moved into the h5tools library. Platforms tested: FreeBSD 4.11 (sleipnir) w/CC=g++ Too minor to require h5committest
* [svn-r10637] Purpose:Quincey Koziol2005-04-217-15/+96
| | | | | | | | | | | | Bug fix/code cleanup Description: Add tests to determine that very long (64K+) object names are working. Fixed a couple of bugs in h5dump where they weren't... Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10630] Purpose:Quincey Koziol2005-04-192-2/+2
| | | | | | | | | | | Cleanup Description: Add some new test files to the 'distclean' target. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10628] Purpose:Quincey Koziol2005-04-181-1/+3
| | | | | | | | | | | Code cleanup Description: Clean up various warnings reported by the Windows team. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10570] Purpose: MaintenanceElena Pourmal2005-04-0710-40/+0
| | | | | | | | | | | Description: Removed support for SRB driver Solution: Removed or modified appropriate files; ran reconfigure to regenerate Makefile.in and configure files. Platforms tested: heping and shanti Misc. update: ran bin/chkmanifest on heping
* [svn-r10534] Purpose:James Laird2005-04-0410-0/+10
| | | | | | | | | | | | | | | | | | | | Configuration feature Description: Different Fortran compilers mangle function names in different ways (upper case, lower case, adding underscores). To link between Fortran and C functions, we need to know what a given function's name is under a given compiler. Solution: Use autoconf's FC_WRAPPERS check to determine the Fortran naming scheme and define the FC_FUNC_ macro to name our functions (in H5f90proto.h). Removed references to our old FNAME macro, as well as flags that indicated whether function names were upper or lower case. Platforms tested: mir, pommier, modi4, copper, more
* [svn-r10517] Purpose:James Laird2005-03-3110-60/+150
| | | | | | | | | | | | | | | | Bug fix Description: On some machines, $RUNSERIAL variable needs to be used to run tests. Set $RUNTESTS (which is used for non-parallel tests) to be $RUNSERIAL in configure.am. Also, since I was updating all Makefiles.in anyway, I updated commence.am to point to autotools installs in AFS instead of those on heping. Platforms tested: mir, sleipnir, modi4, copper
* [svn-r10511] James Laird2005-03-3010-10/+60
| | | | | | | | | | | | | Purpose: "Bug fix" Description: Hardcoded Makefiles to use /bin/sh instead of letting configure detect shell automatically. This is what v1.6 does, and avoids problems on janus. Platforms tested: sleipnir, copper, modi4, mir
* [svn-r10506] Purpose:Quincey Koziol2005-03-291-0/+8
| | | | | | | | | | | | New feature Description: Add first iteration of "segmented heap" code, which will be used to store links in groups in a more flexible way than the previous "local heap" mechanism. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r10475] Purpose:James Laird2005-03-2910-0/+20
| | | | | | | | | | | | | | | | | Feature - conditional compilation Description: SRB file driver and tests are now compiled only when SRB is enabled (using --with-srb during configure). Solution: Added an automake conditional in configure.in, altered Makefiles.am in src and test directories to depend on that conditional. This should make a nice example for posterity to add conditionally compiled sources. Platforms tested: heping (only configure change)
* [svn-r10459] James Laird2005-03-2810-0/+10
| | | | | | | | | | | | | | | | | Purpose: Added C++ wrapper for Packet Table API. Description: Added macro for high-level C++ library (LIBH5CPP_HL), which changes every Makefile.in. Added directories for high-level C++ library (though currently only Packet Table API is supported). Added both C++ source and tests. Platforms tested: sleipnir, mir, modi4 Misc. update:
* [svn-r10250] Purpose:Albert Cheng2005-03-211-1/+1
| | | | | | | | | | Replaced tmpfile() call with system macro HDtmpfile so that it is easier to customize for systems. Platforms tested: in heping. Misc. update:
* [svn-r10220] Purpose: Minor bug fixElena Pourmal2005-03-152-2/+2
| | | | | | | | | | | Description: h5jam and h5unjam used old names jam and unjam while printing help message Solution: fixed Platforms tested: heping Misc. update:
* [svn-r10207] Purpose:Leon Arber2005-03-141-1/+1
| | | | | | | | | | | | | | | Bug fix Description: Typo in #ifdef to check for snprintf functionality. Solution: That should have been H5_VSNPRINTF_WORKS. Platforms tested: heping, modi4 Misc. update:
* [svn-r10206] Leon Arber2005-03-133-11/+11
| | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix. Description: ph5diff fails on modi4 due to the way snprintf works on IRIX. Solution: The C99 standard says that, if there isn't enough room in the string, snprintf should return the number of characters that would have been written to the output string if there were enough room. The snprintf on modi4 would return the number of characters that is was able to write succesfully to the string if space ran out. The ph5diff logic that checks if the output buffer was full did not handle this sort of return value correctly. Used VSNPRINTF_WORKS from configure test to check how snprintf works and do the logic accordingly. Platforms tested: modi4 Misc. update:
* [svn-r10184] Purpose:Quincey Koziol2005-03-111-44/+24
| | | | | | | | | | | | | | | | | | | | New feature Description: Add new "block tracker" data structure to library, for tracking blocks of bytes in a file. Block trackers will be used to keep track of the blocks belonging to the soon-to-be-implemented "segmented heap" which is designed to replace the current local & global heaps (starting with the local heap). Block trackers will also keep track of the free space in the segmented heap and someday could be used to track the free space in the entire HDF5 file. They are implemented as a small header of information to cache the state of the blocks (max & min sizes of blocks tracked, etc.) and the records of the blocks themselves are stored in a v2 B-tree. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti) h5committest
* [svn-r10170] Purpose:Leon Arber2005-03-094-57/+161
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fixes Description: Fixes for several bugs, including dumping of excess output to a temporary file, fix for printing hsize_t datatype, and the long awaited fix for intermixed output. Solution: Fix 1: Overflow file Previously, any output that a worker task made was buffered locally in memory, up to a point. Any output beyond the size of the buffer (used to be 10k) was discarded. Now, the memory buffer size has been changed to 1k and any output beyond this amount is sent a temporary file. This way, no output is lost and memory usage is kept under control. The temporary file is deleted as soon as a worker task finishes sending its contents to the manager. Fix 2: hsize_t printing Printing of the hsize_t datatype used to be handled by %Hu passed to HDfprintf. However, there is no corresponding HDvsnprintf that is able to print hsize_t types. These are now printed with the aid of H5_PRINTF_LL_WIDTH. Fix 3: Intermixed output fix Intermixed output would occur on some machines (although I haven't seen it happen for a while) due to the unpredictability of the underlying network and the speed at which various message would travel. This has been fixed by having all output send to the manager for printing. The worker tasks no longer print the output themselves upon receipt of a token, but instead send that data to the manager. Platforms tested: heping, eirene, tg-login (the only place that seems to still experience intermixed output every now and then) Misc. update:
* [svn-r10158] Purpose:James Laird2005-03-0710-1537/+2568
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10144] Purpose:Quincey Koziol2005-03-042-0/+2
| | | | | | | | | | | | | | | | Bug fix Description: The GASS VFL driver header file was bringing in the <string.h> header file, which several other source code modules needed also, but weren't including explicitly themselves. Solution: Add includes for <string.h> to files which actually need them. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ as CC Configuration not tested by h5committest...
* [svn-r10136] Purpose:Albert Cheng2005-03-032-11/+23
| | | | | | | | | | | | | | | | Bug fix. Description: MPI_LONG_LONG, which is not standard yet, was used to pass the nubmer of differences found. This was needed because number of differences is defined as type hsize_t which can be arbitary large such that there is no MPI type that matches it. The value is passed between processes as an array of bytes in order to be portable. But this may not work in non-homogeneous MPI environments. This fix was actually Leon's idea. Platforms tested: Tested in QSC in which this failed.
* [svn-r10130] Purpose:Albert Cheng2005-03-031-4/+0
| | | | | | | Retired GASS driver. Platforms tested: H5committested.
* [svn-r10123] Purpose:Albert Cheng2005-03-0210-30/+0
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10067] Purpose:Robert E. McGrath2005-02-238-2/+233
| | | | | | | | | | | | | | | | | | | | | | | | | feature Description: h5repack support for scaleoffset compression Checking in early to help debug the filter. Solution: Added messages and command line to handle new scale offset filter. Note: TESTS ARE DISABLED FOR NOW. The filter is not complete, repack tests may fail due to know problems. PLEASE DO NOT MESS WITH THE SCALEOFFSET TESTS AT THIS TIME. They will be enabled when the filter is ready. Platforms tested: verbena,copper,shanti Misc. update: MANIFEST
* [svn-r10066] Purpose:James Laird2005-02-2310-0/+40
| | | | | | | | | | Libtool upgrade Description: HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14. Platforms tested: verbena, heping, pommier, copper, modi4, arabica
* [svn-r10060] Purpose:Robert E. McGrath2005-02-219-1/+89
| | | | | | | | | | | | | | feature Description: h5dump support for scaleoffset compression Solution: Platforms tested: verbena, shanti,copper64 Misc. update:
* [svn-r10035] Purpose: Bug fixRaymond Lu2005-02-172-4/+18
| | | | | | | | | | Description: On SGI Altix(cobalt) Linux, wrong values were printed out for enum data type members. No apparent reason was discovered. Solution: use another pointer to the buffer containing the member value. It seems fix the problem. Platforms tested: cobalt - simple change, where the bug was discovered.
* [svn-r10029] Purpose:Albert Cheng2005-02-171-3/+17
| | | | | | | | | | | | | | | | | | bug fix. Description: When MPE library is used, it prints two extra message lines that interfere with the expected output. Solution: Filter out those two lines of text from stderr. Also added a provision to print the whole generated output when failure is detected. Platforms tested: Tested in copper, serial, parallel and parallel with MPE. Misc. update:
* [svn-r10027] Purpose:Xiaowen Wu2005-02-1710-0/+10
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r10017] Purpose:Albert Cheng2005-02-167-571/+633
| | | | | | | | | | | | | | | | | bug fix/new feature. Description: (committing changes made by Leon.) ph5diff now is a real program by itself. It has its own main (ph5diff_main.c). Codes common to h5diff and ph5diff are in h5diff_common.c. Removed the hack that hide failures from testh5diff.sh. Platforms tested: heping(serial, pp), sol (pp), copper(pp). Misc. update:
* [svn-r10016] James Laird2005-02-1610-10/+0
| | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: modi4 dies during build with strange errors. The root cause of these is a two-year-old hack in HDF5's libtool script that only takes effect on IRIX. Solution: Edited the libtool hack (by editing ltmain.sh) to correct a bug in the hack. Also made sure that compiler-specific DEFAULT_LIBS are used when linking. Platforms tested: sleipnir, copper, modi4, sol
* [svn-r10015] Purpose:Robert E. McGrath2005-02-161-0/+27
| | | | | | | | | | | | | feature Description: file was omitted from checkin yesterday Solution: Platforms tested: Misc. update:
* [svn-r10010] Purpose:Robert E. McGrath2005-02-151-0/+0
| | | | | | | | | | | | | feature Description: nbit support in repack Solution: Platforms tested: Misc. update:
* [svn-r10009] Purpose:Robert E. McGrath2005-02-158-1/+257
| | | | | | | | | | | | | | | feature Description: support for nbit compression in h5repack Solution: Platforms tested: verbena,copper,shanti Misc. update: manifest
* [svn-r10007] Purpose:Albert Cheng2005-02-151-6/+7
| | | | | | | | | | | | | | Bug fix. Description: ph5diff is still being fixed. Changed this to report all failures but will not flag them as errors so that daily tests can continue. Will be fixed soon. Platforms tested: Tested in sol (pp) where it has most failures. Misc. update:
* [svn-r10000] Purpose:Pedro Vicente Nunes2005-02-141-0/+28
| | | | | | | | | | | | | | bug fix Description: in 1 case when there was not a requested layout, the original chunk was not preserved Solution: Platforms tested: linux (small change) Misc. update:
* [svn-r9998] Leon Arber2005-02-131-6/+15
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Fixed the error on copper where output would match, except the worker tasks are forcefuly terminated at the end. Solution: If an exit code other than 0 was returned, the parallel environment would assume that there was an error and would terminate all other tasks. Because h5repack relies on the return value of h5diff, it was necessary to return values other than 0. Fixed by having parallel runs of h5diff always return 0, whereas the return value of serial runs is unchanged. Platforms tested: copper Misc. update:
* [svn-r9994] Purpose:Quincey Koziol2005-02-111-0/+1
| | | | | | | | | | | Bug fix Description: Unbreak build by adding definition for NBIT macro. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r9993] Purpose:James Laird2005-02-1118-18/+18
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9991] Purpose:Robert E. McGrath2005-02-112-0/+23
| | | | | | | | | | | | | Feature Description: dumper support for nbit Solution: Platforms tested: Misc. update:
* [svn-r9989] Purpose:Robert E. McGrath2005-02-113-0/+30
| | | | | | | | | | | | | | | Feature Description: Adding support for NBIT compression to dumper Solution: Platforms tested: arabica, verbena, copper64 Misc. update:
* [svn-r9988] Purpose:James Laird2005-02-1111-176/+40
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9980] Purpose:Albert Cheng2005-02-101-6/+2
| | | | | | | | | | | | | | | | bug fix. Description: Need eval before the RUNCMD command because some machines like AIX, has RUNPARALLEL in the style as MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out that throws the shell script off. Platforms tested: Tested in copper (pp) where it failed before. Tested in heping pp too. Misc. update:
* [svn-r9979] Purpose:Albert Cheng2005-02-101-1/+0
| | | | | | | | | | | | | | | | Bug fixed. Description: Heping used to have a network limit that if too many rsh connections occurred in a second, it stopped accepting connections for 30 seconds. That caused testph5diff to fail when too many mpi jobs are executed repidly. A sleep 2 was in to go around this problem. Heping's limit has been raised, thus no more need for this hack. Sleep 2 is removed. Platforms tested: Tested in heping (pp). Misc. update:
* [svn-r9969] Purpose:Leon Arber2005-02-094-5/+12
| | | | | | | | | | | | | | | | | | | Correction to previous print_manager_output bugfix Description: Although the previous bugfix did fix all the errors, it was not the correct way to fix the problem. Since the manager will only buffer output when run in parallel mode, in serial mode this function should not even be called. Solution: Wrapped print_manager_output in #define's to prevent it from being included in serial builds. Platforms tested: heping (serial + parallel) Misc. update:
* [svn-r9968] Pedro Vicente Nunes2005-02-091-7/+7
| | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: a string with 2 characters was declared as having size 2. changed to size 3 (+ null character) this was causing compiler warnings with g++ Solution: Platforms tested: linux free bsd (g++) Misc. update:
* [svn-r9964] Purpose:Albert Cheng2005-02-091-0/+4
| | | | | | | | | | | | | | bug fix Description: g++ was not happy with missing protocols of external functions. Added print_manager_output(void) and phdiff_dismiss_workers(void) to the public declarations. Platforms tested: Tested in sleipnir (g++) and heping (serial, pp) Misc. update:
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