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* | Minor formatting adjustments.Jacob Smith2019-07-223-24/+10
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* | Undo some formatting modifications.Jacob Smith2019-06-213-44/+40
| | | | | | | | Update MANIFEST.
* | Merge branch 'develop' into bugfix/repack_external_storageJacob Smith2019-06-2044-1016/+692
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| * HDFFV-10805 Add option to only build shared targetsAllen Byrne2019-06-1839-375/+684
| | | | | | | | | | HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static HDFFV-10803 Update FindSZIP.cmake find module Remove unneeded modules and update java modules
| * Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. TheyLarry Knox2019-06-142-227/+0
| | | | | | | | | | | | | | should always be built and installed whether tools are enabled or disabled. Also added Makefile.am to bin to build h5redeploy and to install and uninstall them. h5cc is created from h5cc.in by configure.
| * Modified Makefile.ams for h5repack, h5watch and gif2h5 to allowLarry Knox2019-06-123-413/+1
| | | | | | | | | | | | | | disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
| * Add options to enable or disable building tools and tests. The defaultLarry Knox2019-06-061-1/+7
| | | | | | | | is enabled for each.
* | Add forgotten files to include from h5repack testfiles for tests.Jacob Smith2019-06-201-0/+10
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* | Fix failing automated reporting.Jacob Smith2019-06-1915-24/+164
| | | | | | | | Add 8-bit big-endian testfile.
* | First pass at repack consolidating external storage if layout given.Jacob Smith2019-05-314-9/+20
| | | | | | | | Checks out manually, tests still complain.
* | Formatting changes, mostly.Jacob Smith2019-05-301-58/+125
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* | Add initial failing test for h5repack copying external data into new file.Jacob Smith2019-05-306-1/+177
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* | Modify code comments for clarity.Jacob Smith2019-05-281-145/+218
| | | | | | | | Some minor reformatting.
* | refactor h5repack_main.c -- remove some redundancy, formattingJacob Smith2019-05-241-173/+134
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* | Fit help message to 80 character width and clarify some details.Jacob Smith2019-05-142-54/+88
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* Snapshot version 1.11 release 5.hdftest2019-05-021-7/+7
| | | | Update version to 1.11.6.
* HDFFV-10741 - remove SKIP_ERRSTK_TESTS optionAllen Byrne2019-04-158-254/+163
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* Merge remote-tracking branch 'origin/develop' into env_vol_loadQuincey Koziol2019-04-0311-147/+247
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-04-031-7/+7
| |\ | | | | | | | | | | | | | | | | | | | | | * commit '844f38c6462f42a9a3a6002de6a4acb0520b8fb7': Correct entry Snapshot version 1.11 release 4. Update version to 1.11.5. Allow option to select NAMESPACE Correct examples for packaging
| | * Snapshot version 1.11 release 4.hdftest2019-04-011-7/+7
| | | | | | | | | | | | Update version to 1.11.5.
| * | HDFFV-10741 - add option to skip tool error stack testsAllen Byrne2019-03-268-140/+228
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| * Added the HDopen work-around on windows to pio_engine.cDana Robinson2019-03-151-0/+6
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| * Adds _wopen support on Windows so that files with UTF-8 namesDana Robinson2019-03-151-0/+6
| | | | | | | | | | | | can be opened. Fixes: HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691
* | Specify the default VOL connector to use with an environment variable.Quincey Koziol2019-03-103-4/+15
|/ | | | | | | | This implicitly adds support for changing the VOL connector for command-line tools or any application linked with the library. Also, add 'make check-vol' support for all directories, clearing up necessary issues in testing scripts, etc.
* HDFFV-10703 Update CMake commands to latest standardAllen Byrne2019-02-1516-152/+134
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* Refactor mpi test namesAllen Byrne2019-02-112-10/+10
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* Rename parallel tests to start with PAR_Allen Byrne2019-02-111-1/+1
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* Distinguish parallel performance testsAllen Byrne2019-02-111-2/+2
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* Refactor out timeout valuesAllen Byrne2019-02-061-1/+1
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* Fail configure if SZIP/ZLIB is requested but not foundAllen Byrne2019-02-051-4/+2
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* Invalid position of declaration fixed.Allen Byrne2019-01-251-1/+2
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* Merge pull request #1479 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-241-1/+2
|\ | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop HDFFV-10586 and HDFFV-10588 * commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a': Added test for HDFFV-10588 Fixed HDFFV-10684 Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-157-24/+0
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | Fixed HDFFV-10586 and HDFFV-10588Binh-Minh Ribler2019-01-151-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* | | Fix typoAllen Byrne2019-01-181-1/+1
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* | | Fix missing depends for last repart testAllen Byrne2019-01-181-9/+16
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* | Merge pull request #1441 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-091-1/+16
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop * commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8': Fixed typo Platforms tested: Darwin (osx1010test) Refixed HDFFV-10578 Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test) Removed previous change in H5O__chunk_deserialize(). Removed the previous change in H5O__chunk_deserialize() Removed previous change in table_list_add(). Removed the previous change in table_list_add() Updated per review Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly) HDFFV-10578 and HDFFV-10676 Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error.
| * Fixed typoBinh-Minh Ribler2019-01-081-1/+1
| | | | | | | | | | Platforms tested: Darwin (osx1010test)
| * Refixed HDFFV-10578Binh-Minh Ribler2019-01-081-1/+16
| | | | | | | | | | | | | | | | | | | | | | | | Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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| * Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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| * Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-061-2/+2
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * | HDFFV-10578 and HDFFV-10676Binh-Minh Ribler2019-01-061-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10578 - CVE-2018-17234 The file has some issue, however, there was a bug in h5dump that caused memory leaks after the problem in the file was encountered. The bug was that an if statement was missing in the function table_list_add() resulting in the memory not being freed at a later time. After the fix had been applied, there were no more leaks after h5dump detected the issue in the file and reported the error. In H5O__chunk_deserialize, replaced an assert with an if statement and reporting error, per Neil's recommendation HDFFV-10676 - CVE-2018-13873 Also in H5O__chunk_deserialize, added an assertion to detect out of bound ids
* | | Updated error stacks for h5dump testing.Quincey Koziol2019-01-067-24/+0
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* | Fix runtest case for data to stdout in toolAllen Byrne2018-12-311-2/+2
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* Remove unused CMake filesAllen Byrne2018-12-212-65/+0
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* HDFFV-10656 Add CHECK_VOL support to CMakeAllen Byrne2018-12-203-39/+139
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* Use H5I_INVALID_HIDAllen Byrne2018-12-151-1/+1
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* HDFFV-10632 update autotools test scripts to match cmakeAllen Byrne2018-12-069-61/+230
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* HDFFV=10632 test cleanupAllen Byrne2018-12-0615-168/+2
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