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* [svn-r26329] Merge of r26069, r26070, and r26072 from the ↵Dana Robinson2015-02-2720-294/+33
| | | | | | | | | | | | | | | | | | features/autotools_rework branch. Removed the configure option that allows selective disabling of individual internal filters (fletcher32, shuffle, etc.). This feature mucked up the code with a lot of #ifdefs, saved very little space, and was not scalable to a general scheme for library size reduction. We've decided to remove the feature while we investigate a more general scheme for decreasing the library size. Part of: HDFFV-9086 Tested on: h5committest
* [svn-r26305] convert dump_dcpl to use switch statementAllen Byrne2015-02-251-241/+189
| | | | | | Add default case refactor out start ctx and end ctx Tested: local linux
* [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-2512-25/+25
| | | | make clean.
* [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-231-3/+0
| | | | functions to work with v16 default API.
* [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-231-1/+0
| | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
* [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-221-0/+3
| | | | Tested on: jam w/ parallel and fortran
* [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-201-3/+0
| | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
* [svn-r26223] add another H5close before finalize so with-mpe does not fail.Mohamad Chaarawi2015-02-181-1/+4
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* [svn-r26208] Update cmake minimumsAllen Byrne2015-02-1812-12/+12
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* [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-1612-12/+24
| | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
* [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-1612-12/+0
| | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls.Allen Byrne2015-01-261-1/+1
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* [svn-r25955] Added Perform and io_timer back into build.Allen Byrne2015-01-052-2/+2
| | | | Tested: local linux cmake
* [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-052-7/+13
| | | | | | | | | | | | | Last changes had caused problems with Windows platform: 1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools. Need to move it to io_timer.c. 2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler does not like it. Screened it out for now. 3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as "H5TOOLS_DLL". 4. STANDALONE mode is broken. Screened out the code for now. Tested; h5committest.
* [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform ↵Allen Byrne2015-01-052-2/+2
| | | | sub-folder due to SHARED compile issues and other issues.
* [svn-r25946] Removed debug statments that use //.Albert Cheng2015-01-043-12/+0
| | | | Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
* [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2Albert Cheng2015-01-018-16/+11
| | | | | | | | | | | | | | | | | | | | | | Move timing measurement routines used by h5perf and h5perf_serial to tools/lib so that they can be used by other tools too. tools/lib/io_timer.c tools/lib/io_timer.h tools/perform/io_timer.c tools/perform/io_timer.h renamed perform/io_timer.[ch] to lib/io_timer.[ch] tools/lib/Makefile.am tools/lib/Makefile.in tools/lib/CMakeLists.txt tools/perform/Makefile.in tools/perform/Makefile.am tools/perform/CMakeLists.txt MANIFEST updated due to the move. Tested; h5committest and jam (serial)
* [svn-r25938] Remove build and test commands for deleted benchpar.cAllen Byrne2014-12-312-16/+0
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* [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, ↵Albert Cheng2014-12-3014-573/+375
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | stage 1. tools/perform/sio_timer.h: tools/perform/pio_timer.c: tools/perform/io_timer.h: tools/perform/io_timer.c: Renamed pio_timer.[ch] as io_timer.[ch]; merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial call the combined io_timer.[ch]. Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. Screened out set_timer_type() and get_timer_type() which were not used by any code. tools/perform/Makefile.am: tools/perform/Makefile.in: tools/perform/CMakeLists.txt Adjusted to use io_timer.c for both h5perf and h5perf_serial. tools/perform/pio_perf.c: tools/perform/sio_perf.c: tools/perform/pio_perf.h: tools/perform/sio_perf.h: Renamed [sp]io_time_destory() to same io_time_destroy(); Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. tools/perform/pio_engine.c: tools/perform/sio_engine.c: Removed #include io_timer.h since it was already #include by [sp]io_perf.h. MANIFEST: Updated the merge of [sp]io_timer.[ch] into io_timer.[ch]. Tested: h5committest and jam in extra.
* [svn-r25918] If not testing skip building test only programs.Allen Byrne2014-12-221-10/+12
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* [svn-r25909] HDFFV-8156: perform/benchpar failed to runAlbert Cheng2014-12-191-488/+0
| | | | | | | Benchpar.c is retired/deleted. If it is ever needed, it can be retrieved from the SVN repository or even previous version of HDF5 source code. Tested: jam parallel make passed.
* [svn-r25904] Fix CMP0054 warningAllen Byrne2014-12-191-2/+2
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* [svn-r25900] HDFFV-9046: reorganize hdf5/perform/ directory Albert Cheng2014-12-1732-2/+15545
| | | | | | Moved perform/ to tools/perform. Updated all the configure related files for the new location. Tested: h5committested plus tested in jam and kite.
* [svn-r25771] Bug fix: HDFFV-8954Albert Cheng2014-11-041-6/+1
| | | | | | | | | | | | | | Previously, ph5diff may hang in a test in Linux 32 platform(HDFFV-587). No solution was available and a patch to bypass the test is implemented. Since the company is changing domain name soon, the patch would not be valid any more. Tests were done (repeat 100 mpiexec -np 6 ./ph5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5) and the previous hanging problem did not occur. It is likely the newer versions of mpich no longer have this problem. Therefore, it is decide to remove this patch to make the test script cleaner, if nothing else. Tested: ran build and test in Jam (linux 32) and the repeat 100 command mentioned above. All passed.
* [svn-r25755] Removed spurious casts in a few HDfree() statements.Dana Robinson2014-10-313-10/+10
| | | | | | | Discovered when I temporarily #defined HDfree() to a more complicated function while investigating something. Tested on a local linux VM. This is a very minor change.
* [svn-r25745] Testfiles for h5dump bitfields and opaquesAllen Byrne2014-10-272-0/+293
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* [svn-r25744] Add bitfield and opague datatype file for tests.Allen Byrne2014-10-272-0/+160
| | | | Tested: local linux
* [svn-r25741] Remove obsolete comment and add test to suite.Allen Byrne2014-10-271-6/+1
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* [svn-r25570] UNDO:Added option to build tools static when building shared ↵Allen Byrne2014-09-0310-118/+32
| | | | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Windows DLL linkage problem because of defines needed. Tested: local linux
* [svn-r25569] Added option to build tools static when building shared ↵Allen Byrne2014-09-0310-32/+118
| | | | | | libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292. Tested: local linux
* [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.cMohamad Chaarawi2014-08-113-6/+6
| | | | fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
* [svn-r25496] Description:Quincey Koziol2014-07-3012-84/+86
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25397] - remove configure checks for MPI_File_get_size and BigMohamad Chaarawi2014-07-0711-11/+0
| | | | | MPI_File_set_size as they are supported by most MPI implementations. - fix bug in t_mpi.c (HDFFV-8856)
* [svn-r25249] change test to ignore h5diff warnings (endianess issue)Allen Byrne2014-06-101-1/+1
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* [svn-r25215] Description:Quincey Koziol2014-05-251-130/+163
| | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r20914: Use HDstrncpy and HDstrncat! --gh 20915: Use HDstrncpy and HDstrncat! --gh Tested on: Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25197] Description:Quincey Koziol2014-05-173-16/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from hdf5_1_8_coverity branch back to trunk: r20878: Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check. r20880: Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom. r20882: Fixes for coverity: 1) bug #1679: remove dead code in test/mf.c 2) bug #1680: remove dead code in tools/lib/h5diff_dset.c r20883: Fix coverity issue 585 Description: Changed variable "c" in processStrData in h5import.c to an int, to match fgetc return value, and removed call to feof, instead checking if c == EOF. Tested on: MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel (too minor to require h5committest)
* [svn-r25188] Implement change to cmake_ext_mod config folderAllen Byrne2014-05-1414-44/+44
| | | | Tested: local linux
* [svn-r25185] update cmake command name caseAllen Byrne2014-05-122-18/+3
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* [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll ↵Larry Knox2014-04-2511-11/+0
| | | | | | | | | | | back fix for removing rpaths from l ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co nfigure option was invoked. Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux and solaris machines. Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
* [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes.Dana Robinson2014-04-2512-646/+646
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* [svn-r25112] Description:Quincey Koziol2014-04-251-1/+4
| | | | | | | | Revert r25081 Tested on: MacOSX/64 10.9.2 (amazon) w/FORTRAN & parallel (h5committest not necessary)
* [svn-r25081] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:Albert Cheng2014-04-2210-11/+60
| | | | | | | | | | | | h5diff issues "unable to read attribute" error message when comparing two files Description: h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure. Solution: We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error. We still need to figure out the proper way, if possible, to compare variable string with non-variable string types. Tested: h5committested plus tested in Swallow (OS X 10.8).
* [svn-r25043] Correct CPPFLAGS value.Allen Byrne2014-04-141-1/+1
| | | | Correct test DEPENDS format.
* [svn-r24999] Bugfix: HDFFV-8639 Albert Cheng2014-04-091-3/+7
| | | | | | | | | | | h5diff segfaults with user's files Solution: Added a variable to indicate if real data are in the buffer and will call H5Dvlen_reclaim() only when real data are in the buffer. Tested: with the user provided data files and no more segmentaion fault. Also h5committ tested.
* [svn-r24948] Group tests by Common nameAllen Byrne2014-04-022-8/+8
| | | | | | Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32 Tested: local linux CMake
* [svn-r24937] Adds an H5free_memory() function to the library for use withDana Robinson2014-03-315-14/+15
| | | | | | | | | | | | functions that return library-allocated memory. The test and tool code were modified to use this new function where it's appropriate. Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551 Tested on: 64-bit Windows 7 w/ VS2012 32-bit LE linux w/ parallel and fortran (jam) 32-bit LE linux w/ fortran and C++ (jam)
* [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS ↵Allen Byrne2014-03-3121-840/+5005
| | | | | | instead of INCLUDES. Update automake to 1.14.1 h5committest
* [svn-r24895] Add INTERFACE properties to libsAllen Byrne2014-03-251-1/+4
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* [svn-r24869] Description:Quincey Koziol2014-03-232-106/+96
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24864] Description:Quincey Koziol2014-03-2113-84/+24
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
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